Melissa Ly

Title(s)CLIN RSCH CRD, Pathology
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Common antibiotics, azithromycin and amoxicillin, affect gut metagenomics within a household. BMC Microbiol. 2023 08 02; 23(1):206. Chopyk J, Cobián Güemes AG, Ramirez-Sanchez C, Attai H, Ly M, Jones MB, Liu R, Liu C, Yang K, Tu XM, Abeles SR, Nelson K, Pride DT. PMID: 37528343; PMCID: PMC10394940.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    2. Temporal variations in bacterial community diversity and composition throughout intensive care unit renovations. Microbiome. 2020 06 08; 8(1):86. Chopyk J, Akrami K, Bavly T, Shin JH, Schwanemann LK, Ly M, Kalia R, Xu Y, Kelley ST, Malhotra A, Torriani FJ, Sweeney DA, Pride DT. PMID: 32513256; PMCID: PMC7278141.
      View in: PubMed   Mentions: 16     Fields:    Translation:CellsPHPublic Health
    3. Fecal Viral Community Responses to High-Fat Diet in Mice. mSphere. 2020 02 26; 5(1). Schulfer A, Santiago-Rodriguez TM, Ly M, Borin JM, Chopyk J, Blaser MJ, Pride DT. PMID: 32102942; PMCID: PMC7045389.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    4. Bacteriophage targeting of gut bacterium attenuates alcoholic liver disease. Nature. 2019 11; 575(7783):505-511. Duan Y, Llorente C, Lang S, Brandl K, Chu H, Jiang L, White RC, Clarke TH, Nguyen K, Torralba M, Shao Y, Liu J, Hernandez-Morales A, Lessor L, Rahman IR, Miyamoto Y, Ly M, Gao B, Sun W, Kiesel R, Hutmacher F, Lee S, Ventura-Cots M, Bosques-Padilla F, Verna EC, Abraldes JG, Brown RS, Vargas V, Altamirano J, Caballería J, Shawcross DL, Ho SB, Louvet A, Lucey MR, Mathurin P, Garcia-Tsao G, Bataller R, Tu XM, Eckmann L, van der Donk WA, Young R, Lawley TD, Stärkel P, Pride D, Fouts DE, Schnabl B. PMID: 31723265; PMCID: PMC6872939.
      View in: PubMed   Mentions: 440     Fields:    Translation:HumansAnimalsCells
    5. The Virome of Cerebrospinal Fluid: Viruses Where We Once Thought There Were None. Front Microbiol. 2019; 10:2061. Ghose C, Ly M, Schwanemann LK, Shin JH, Atab K, Barr JJ, Little M, Schooley RT, Chopyk J, Pride DT. PMID: 31555247; PMCID: PMC6742758.
      View in: PubMed   Mentions: 32  
    6. Shared and Distinct Features of Human Milk and Infant Stool Viromes. Front Microbiol. 2018; 9:1162. Pannaraj PS, Ly M, Cerini C, Saavedra M, Aldrovandi GM, Saboory AA, Johnson KM, Pride DT. PMID: 29910789; PMCID: PMC5992295.
      View in: PubMed   Mentions: 73  
    7. Draft Genome Sequence of an Enterococcus faecalis ATCC 19433 Siphovirus Isolated from Raw Domestic Sewage. Genome Announc. 2017 Jan 19; 5(3). Santiago-Rodriguez TM, Ly M, Pride DT, Toranzos GA. PMID: 28104647; PMCID: PMC5255928.
      View in: PubMed   Mentions: 1  
    8. Transmission of viruses via our microbiomes. Microbiome. 2016 Dec 02; 4(1):64. Ly M, Jones MB, Abeles SR, Santiago-Rodriguez TM, Gao J, Chan IC, Ghose C, Pride DT. PMID: 27912785; PMCID: PMC5134127.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansCells
    9. Microbial diversity in individuals and their household contacts following typical antibiotic courses. Microbiome. 2016 07 30; 4(1):39. Abeles SR, Jones MB, Santiago-Rodriguez TM, Ly M, Klitgord N, Yooseph S, Nelson KE, Pride DT. PMID: 27473422; PMCID: PMC4967329.
      View in: PubMed   Mentions: 95     Fields:    Translation:HumansCells
    10. Chemostat culture systems support diverse bacteriophage communities from human feces. Microbiome. 2015 Nov 09; 3:58. Santiago-Rodriguez TM, Ly M, Daigneault MC, Brown IH, McDonald JA, Bonilla N, Vercoe EA, Pride DT. PMID: 26549756; PMCID: PMC4638026.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansCells
    11. Effects of Long Term Antibiotic Therapy on Human Oral and Fecal Viromes. PLoS One. 2015; 10(8):e0134941. Abeles SR, Ly M, Santiago-Rodriguez TM, Pride DT. PMID: 26309137; PMCID: PMC4550281.
      View in: PubMed   Mentions: 66     Fields:    Translation:HumansCells
    12. Transcriptome analysis of bacteriophage communities in periodontal health and disease. BMC Genomics. 2015 Jul 28; 16:549. Santiago-Rodriguez TM, Naidu M, Abeles SR, Boehm TK, Ly M, Pride DT. PMID: 26215258; PMCID: PMC4515923.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansCells
    13. Global transcription of CRISPR loci in the human oral cavity. BMC Genomics. 2015 May 21; 16:401. Lum AG, Ly M, Santiago-Rodriguez TM, Naidu M, Boehm TK, Pride DT. PMID: 25994215; PMCID: PMC4438527.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    14. Identification of staphylococcal phage with reduced transcription in human blood through transcriptome sequencing. Front Microbiol. 2015; 6:216. Santiago-Rodriguez TM, Naidu M, Jones MB, Ly M, Pride DT. PMID: 26074882; PMCID: PMC4447126.
      View in: PubMed   Mentions: 5  
    15. The human urine virome in association with urinary tract infections. Front Microbiol. 2015; 6:14. Santiago-Rodriguez TM, Ly M, Bonilla N, Pride DT. PMID: 25667584; PMCID: PMC4304238.
      View in: PubMed   Mentions: 94  
    16. Conservation of streptococcal CRISPRs on human skin and saliva. BMC Microbiol. 2014 Jun 06; 14:146. Robles-Sikisaka R, Naidu M, Ly M, Salzman J, Abeles SR, Boehm TK, Pride DT. PMID: 24903519; PMCID: PMC4063239.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    17. Altered oral viral ecology in association with periodontal disease. mBio. 2014 May 20; 5(3):e01133-14. Ly M, Abeles SR, Boehm TK, Robles-Sikisaka R, Naidu M, Santiago-Rodriguez T, Pride DT. PMID: 24846382; PMCID: PMC4030452.
      View in: PubMed   Mentions: 99     Fields:    Translation:HumansCells
    18. Human oral viruses are personal, persistent and gender-consistent. ISME J. 2014 Sep; 8(9):1753-67. Abeles SR, Robles-Sikisaka R, Ly M, Lum AG, Salzman J, Boehm TK, Pride DT. PMID: 24646696; PMCID: PMC4139723.
      View in: PubMed   Mentions: 94     Fields:    Translation:HumansCells
    19. Association between living environment and human oral viral ecology. ISME J. 2013 Sep; 7(9):1710-24. Robles-Sikisaka R, Ly M, Boehm T, Naidu M, Salzman J, Pride DT. PMID: 23598790; PMCID: PMC3749502.
      View in: PubMed   Mentions: 59     Fields:    Translation:HumansCellsPHPublic Health
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