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Stuart Sandin

TitleAssociate Professor
InstitutionUniversity of California San Diego
DepartmentScripps Institution of Oceanography Department
Address9500 Gilman Drive #0202
La Jolla CA 92093
Phone858-534-4150
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Wood CL, Zgliczynski BJ, Haupt AJ, Guerra AS, Micheli F, Sandin S. Human impacts decouple a fundamental ecological relationship-The positive association between host diversity and parasite diversity. Glob Chang Biol. 2018 May 20. PMID: 29781155.
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    2. McCauley DJ, Gellner G, Martinez ND, Williams RJ, Sandin S, Micheli F, Mumby PJ, McCann KS. On the prevalence and dynamics of inverted trophic pyramids and otherwise top-heavy communities. Ecol Lett. 2018 Mar; 21(3):439-454. PMID: 29316114.
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    3. Ruttenberg B, Caselle JE, Estep AJ, Johnson AE, Marhaver KL, Richter LJ, Sandin S, Vermeij MJA, Smith JE, Grenda D, Cannon A. Ecological assessment of the marine ecosystems of Barbuda, West Indies: Using rapid scientific assessment to inform ocean zoning and fisheries management. PLoS One. 2018; 13(1):e0189355. PMID: 29309413.
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    4. Nicklisch SCT, Bonito LT, Sandin S, Hamdoun A. Geographic Differences in Persistent Organic Pollutant Levels of Yellowfin Tuna. Environ Health Perspect. 2017 06 26; 125(6):067014. PMID: 28686554.
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    5. Nicklisch SCT, Bonito LT, Sandin S, Hamdoun A. Mercury levels of yellowfin tuna (Thunnus albacares) are associated with capture location. Environ Pollut. 2017 Oct; 229:87-93. PMID: 28577385.
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    6. Furby KA, Smith JE, Sandin S. Porites superfusa mortality and recovery from a bleaching event at Palmyra Atoll, USA. PeerJ. 2017; 5:e3204. PMID: 28480135.
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    7. Knowles B, Bailey B, Boling L, Breitbart M, Cobián-Güemes A, Del Campo J, Edwards R, Felts B, Grasis J, Haas AF, Katira P, Kelly LW, Luque A, Nulton J, Paul L, Peters G, Robinett N, Sandin S, Segall A, Silveira C, Youle M, Rohwer F. Variability and host density independence in inductions-based estimates of environmental lysogeny. Nat Microbiol. 2017 Apr 28; 2:17064. PMID: 28452987.
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    8. Quinn RA, Vermeij MJ, Hartmann AC, d'Auriac IG, Benler S, Haas A, Quistad SD, Lim YW, Little M, Sandin S, Smith JE, Dorrestein PC, Rohwer F. Correction to 'Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence'. Proc Biol Sci. 2016 Aug 31; 283(1837). PMID: 27559065; PMCID: PMC5013801.
    9. Eynaud Y, McNamara DE, Sandin S. Herbivore space use influences coral reef recovery. R Soc Open Sci. 2016 Jun; 3(6):160262. PMID: 27429784; PMCID: PMC4929919.
    10. Cinner JE, Huchery C, MacNeil MA, Graham NA, McClanahan TR, Maina J, Maire E, Kittinger JN, Hicks CC, Mora C, Allison EH, D'Agata S, Hoey A, Feary DA, Crowder L, Williams ID, Kulbicki M, Vigliola L, Wantiez L, Edgar G, Stuart-Smith RD, Sandin S, Green AL, Hardt MJ, Beger M, Friedlander A, Campbell SJ, Holmes KE, Wilson SK, Brokovich E, Brooks AJ, Cruz-Motta JJ, Booth DJ, Chabanet P, Gough C, Tupper M, Ferse SC, Sumaila UR, Mouillot D. Bright spots among the world’s coral reefs. Nature. 2016 07 21; 535(7612):416-9. PMID: 27309809.
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    11. Quinn RA, Vermeij MJ, Hartmann AC, Galtier d'Auriac I, Benler S, Haas A, Quistad SD, Lim YW, Little M, Sandin S, Smith JE, Dorrestein PC, Rohwer F. Metabolomics of reef benthic interactions reveals a bioactive lipid involved in coral defence. Proc Biol Sci. 2016 Apr 27; 283(1829). PMID: 27122568; PMCID: PMC4855392.
    12. Caldwell ZR, Zgliczynski BJ, Williams GJ, Sandin S. Reef Fish Survey Techniques: Assessing the Potential for Standardizing Methodologies. PLoS One. 2016; 11(4):e0153066. PMID: 27111085; PMCID: PMC4844186.
    13. Haas AF, Fairoz MF, Kelly LW, Nelson CE, Dinsdale EA, Edwards RA, Giles S, Hatay M, Hisakawa N, Knowles B, Lim YW, Maughan H, Pantos O, Roach TN, Sanchez SE, Silveira CB, Sandin S, Smith JE, Rohwer F. Global microbialization of coral reefs. Nat Microbiol. 2016 04 25; 1(6):16042. PMID: 27572833.
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    14. Nicklisch SC, Rees SD, McGrath AP, Gökirmak T, Bonito LT, Vermeer LM, Cregger C, Loewen G, Sandin S, Chang G, Hamdoun A. Global marine pollutants inhibit P-glycoprotein: Environmental levels, inhibitory effects, and cocrystal structure. Sci Adv. 2016 Apr; 2(4):e1600001. PMID: 27152359; PMCID: PMC4846432.
    15. Bonito LT, Hamdoun A, Sandin S. Evaluation of the global impacts of mitigation on persistent, bioaccumulative and toxic pollutants in marine fish. PeerJ. 2016; 4:e1573. PMID: 26839747; PMCID: PMC4734435.
    16. Smith JE, Brainard R, Carter A, Grillo S, Edwards C, Harris J, Lewis L, Obura D, Rohwer F, Sala E, Vroom PS, Sandin S. Re-evaluating the health of coral reef communities: baselines and evidence for human impacts across the central Pacific. Proc Biol Sci. 2016 Jan 13; 283(1822). PMID: 26740615; PMCID: PMC4721084 [Available on 01/13/17].
    17. Haas AF, Guibert M, Foerschner A, Co T, Calhoun S, George E, Hatay M, Dinsdale E, Sandin S, Smith JE, Vermeij MJ, Felts B, Dustan P, Salamon P, Rohwer F. Can we measure beauty? Computational evaluation of coral reef aesthetics. PeerJ. 2015; 3:e1390. PMID: 26587350; PMCID: PMC4647610.
    18. Wood CL, Baum JK, Reddy SM, Trebilco R, Sandin S, Zgliczynski BJ, Briggs AA, Micheli F. Productivity and fishing pressure drive variability in fish parasite assemblages of the Line Islands, equatorial Pacific. Ecology. 2015 May; 96(5):1383-98. PMID: 26236851.
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    19. Lim YW, Cuevas DA, Silva GG, Aguinaldo K, Dinsdale EA, Haas AF, Hatay M, Sanchez SE, Wegley-Kelly L, Dutilh BE, Harkins TT, Lee CC, Tom W, Sandin S, Smith JE, Zgliczynski B, Vermeij MJ, Rohwer F, Edwards RA. Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition. PeerJ. 2014; 2:e520. PMID: 25177534; PMCID: PMC4145072.
    20. Wood CL, Sandin S, Zgliczynski B, Guerra AS, Micheli F. Fishing drives declines in fish parasite diversity and has variable effects on parasite abundance. Ecology. 2014 Jul; 95(7):1929-46. PMID: 25163125.
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    21. Kelly LW, Williams GJ, Barott KL, Carlson CA, Dinsdale EA, Edwards RA, Haas AF, Haynes M, Lim YW, McDole T, Nelson CE, Sala E, Sandin S, Smith JE, Vermeij MJ, Youle M, Rohwer F. Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors. Proc Natl Acad Sci U S A. 2014 Jul 15; 111(28):10227-32. PMID: 24982156; PMCID: PMC4104888.
    22. Freeman SE, Rohwer FL, D'Spain GL, Friedlander AM, Gregg AK, Sandin S, Buckingham MJ. The origins of ambient biological sound from coral reef ecosystems in the Line Islands archipelago. J Acoust Soc Am. 2014 Apr; 135(4):1775-88. PMID: 25234977.
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    23. Rotjan R, Jamieson R, Carr B, Kaufman L, Mangubhai S, Obura D, Pierce R, Rimon B, Ris B, Sandin S, Shelley P, Sumaila UR, Taei S, Tausig H, Teroroko T, Thorrold S, Wikgren B, Toatu T, Stone G. Establishment, management, and maintenance of the phoenix islands protected area. Adv Mar Biol. 2014; 69:289-324. PMID: 25358303.
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    24. Hartmann AC, Marhaver KL, Chamberland VF, Sandin S, Vermeij MJ. Large birth size does not reduce negative latent effects of harsh environments across life stages in two coral species. Ecology. 2013 Sep; 94(9):1966-76. PMID: 24279268.
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    25. Williams GJ, Smith JE, Conklin EJ, Gove JM, Sala E, Sandin S. Benthic communities at two remote Pacific coral reefs: effects of reef habitat, depth, and wave energy gradients on spatial patterns. PeerJ. 2013; 1:e81. PMID: 23734341; PMCID: PMC3669270.
    26. Gove JM, Williams GJ, McManus MA, Heron SF, Sandin S, Vetter OJ, Foley DG. Quantifying climatological ranges and anomalies for Pacific coral reef ecosystems. PLoS One. 2013; 8(4):e61974. PMID: 23637939; PMCID: PMC3630142.
    27. McDole T, Nulton J, Barott KL, Felts B, Hand C, Hatay M, Lee H, Nadon MO, Nosrat B, Salamon P, Bailey B, Sandin S, Vargas-Angel B, Youle M, Zgliczynski BJ, Brainard RE, Rohwer F. Assessing coral reefs on a Pacific-wide scale using the microbialization score. PLoS One. 2012; 7(9):e43233. PMID: 22970122; PMCID: PMC3436891.
    28. Sugihara G, Beddington J, Hsieh CH, Deyle E, Fogarty M, Glaser SM, Hewitt R, Hollowed A, May RM, Munch SB, Perretti C, Rosenberg AA, Sandin S, Ye H. Are exploited fish populations stable? Proc Natl Acad Sci U S A. 2011 Nov 29; 108(48):E1224-5; author reply E1226. PMID: 22089231; PMCID: PMC3228430.
    29. Sandin S, McNamara DE. Spatial dynamics of benthic competition on coral reefs. Oecologia. 2012 Apr; 168(4):1079-90. PMID: 22009340.
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    30. Kelly LW, Barott KL, Dinsdale E, Friedlander AM, Nosrat B, Obura D, Sala E, Sandin S, Smith JE, Vermeij MJ, Williams GJ, Willner D, Rohwer F. Black reefs: iron-induced phase shifts on coral reefs. ISME J. 2012 Mar; 6(3):638-49. PMID: 21881615; PMCID: PMC3280131.
    31. Estes JA, Terborgh J, Brashares JS, Power ME, Berger J, Bond WJ, Carpenter SR, Essington TE, Holt RD, Jackson JB, Marquis RJ, Oksanen L, Oksanen T, Paine RT, Pikitch EK, Ripple WJ, Sandin S, Scheffer M, Schoener TW, Shurin JB, Sinclair AR, Soulé ME, Virtanen R, Wardle DA. Trophic downgrading of planet Earth. Science. 2011 Jul 15; 333(6040):301-6. PMID: 21764740.
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    32. Ruttenberg BI, Hamilton SL, Walsh SM, Donovan MK, Friedlander A, DeMartini E, Sala E, Sandin S. Predator-induced demographic shifts in coral reef fish assemblages. PLoS One. 2011; 6(6):e21062. PMID: 21698165; PMCID: PMC3116880.
    33. Mora C, Aburto-Oropeza O, Ayala Bocos A, Ayotte PM, Banks S, Bauman AG, Beger M, Bessudo S, Booth DJ, Brokovich E, Brooks A, Chabanet P, Cinner JE, Cortés J, Cruz-Motta JJ, Cupul Magaña A, Demartini EE, Edgar GJ, Feary DA, Ferse SC, Friedlander AM, Gaston KJ, Gough C, Graham NA, Green A, Guzman H, Hardt M, Kulbicki M, Letourneur Y, López Pérez A, Loreau M, Loya Y, Martinez C, Mascareñas-Osorio I, Morove T, Nadon MO, Nakamura Y, Paredes G, Polunin NV, Pratchett MS, Reyes Bonilla H, Rivera F, Sala E, Sandin S, Soler G, Stuart-Smith R, Tessier E, Tittensor DP, Tupper M, Usseglio P, Vigliola L, Wantiez L, Williams I, Wilson SK, Zapata FA. Global human footprint on the linkage between biodiversity and ecosystem functioning in reef fishes. PLoS Biol. 2011 Apr; 9(4):e1000606. PMID: 21483714; PMCID: PMC3071368.
    34. White JW, Samhouri JF, Stier AC, Wormald CL, Hamilton SL, Sandin S. Synthesizing mechanisms of density dependence in reef fishes: behavior, habitat configuration, and observational scale. Ecology. 2010 Jul; 91(7):1949-61. PMID: 20715614.
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    35. Barott KL, Caselle JE, Dinsdale EA, Friedlander AM, Maragos JE, Obura D, Rohwer FL, Sandin S, Smith JE, Zgliczynski B. The lagoon at Caroline/Millennium atoll, Republic of Kiribati: natural history of a nearly pristine ecosystem. PLoS One. 2010 Jun 03; 5(6):e10950. PMID: 20539746; PMCID: PMC2880600.
    36. Smriga S, Sandin S, Azam F. Abundance, diversity, and activity of microbial assemblages associated with coral reef fish guts and feces. FEMS Microbiol Ecol. 2010 Jul 01; 73(1):31-42. PMID: 20455942.
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    37. Barott K, Smith J, Dinsdale E, Hatay M, Sandin S, Rohwer F. Hyperspectral and physiological analyses of coral-algal interactions. PLoS One. 2009 Nov 26; 4(11):e8043. PMID: 19956632.
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    38. Hillebrand H, Borer ET, Bracken ME, Cardinale BJ, Cebrian J, Cleland EE, Elser JJ, Gruner DS, Harpole WS, Ngai JT, Sandin S, Seabloom EW, Shurin JB, Smith JE, Smith MD. Herbivore metabolism and stoichiometry each constrain herbivory at different organizational scales across ecosystems. Ecol Lett. 2009 Jun; 12(6):516-27. PMID: 19392711.
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    39. Vermeij MJ, Sandin S. Density-dependent settlement and mortality structure the earliest life phases of a coral population. Ecology. 2008 Jul; 89(7):1994-2004. PMID: 18705385.
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    40. Gruner DS, Smith JE, Seabloom EW, Sandin S, Ngai JT, Hillebrand H, Harpole WS, Elser JJ, Cleland EE, Bracken ME, Borer ET, Bolker BM. A cross-system synthesis of consumer and nutrient resource control on producer biomass. Ecol Lett. 2008 Jul; 11(7):740-55. PMID: 18445030.
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    41. Anderson CN, Hsieh CH, Sandin S, Hewitt R, Hollowed A, Beddington J, May RM, Sugihara G. Why fishing magnifies fluctuations in fish abundance. Nature. 2008 Apr 17; 452(7189):835-9. PMID: 18421346.
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    42. Sandin S, Smith JE, Demartini EE, Dinsdale EA, Donner SD, Friedlander AM, Konotchick T, Malay M, Maragos JE, Obura D, Pantos O, Paulay G, Richie M, Rohwer F, Schroeder RE, Walsh S, Jackson JB, Knowlton N, Sala E. Baselines and degradation of coral reefs in the Northern Line Islands. PLoS One. 2008 Feb 27; 3(2):e1548. PMID: 18301734; PMCID: PMC2244711.
    43. Dinsdale EA, Pantos O, Smriga S, Edwards RA, Angly F, Wegley L, Hatay M, Hall D, Brown E, Haynes M, Krause L, Sala E, Sandin S, Thurber RV, Willis BL, Azam F, Knowlton N, Rohwer F. Microbial ecology of four coral atolls in the Northern Line Islands. PLoS One. 2008 Feb 27; 3(2):e1584. PMID: 18301735; PMCID: PMC2253183.
    44. Smith JE, Shaw M, Edwards RA, Obura D, Pantos O, Sala E, Sandin S, Smriga S, Hatay M, Rohwer FL. Indirect effects of algae on coral: algae-mediated, microbe-induced coral mortality. Ecol Lett. 2006 Jul; 9(7):835-45. PMID: 16796574.
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    45. Sandin S, Pacala SW. Demographic theory of coral reef fish populations with stochastic recruitment: comparing sources of population regulation. Am Nat. 2005 Jan; 165(1):107-19. PMID: 15729643.
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