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SPECTRE: A Multimodal Spectral Transformer for Small Molecule Annotation. J Chem Inf Model. 2026 Mar 09; 66(5):2501-2512.
Xu W, Ryu B, Tong A, Mao HH, Kim H, Zhao JJ, Zhang C, Xu Y, Wang M, Gerwick WH, Cottrell GW. PMID: 41740590; PMCID: PMC12977036.
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Philippine marine macroalgae as sources of bioactive natural products and macronutrients for food applications. Food Res Int. 2026 Mar 31; 228:118240.
Batucan JD, Ryu B, Malto ZBL, Narvarte BCV, Hinaloc LAR, Patoc RRA, Glukhov E, Gerwick L, Gerwick WH, Salvador-Reyes LA, Roleda MY. PMID: 41703799.
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HumansAnimalsCells
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SMART deep learning tools to accelerate the characterization of natural product structures from their NMR data. Methods Enzymol. 2026; 730:135-168.
Ryu B, Kim MJ, Xu W, Zhang C, Wang M, Kim H, Cottrell GW, Gerwick WH. PMID: 42177060.
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Cells
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Cyanobacteria Join the Kahalalide Conversation: Genome and Metabolite Evidence for Structurally Related Peptides. J Am Chem Soc. 2025 Sep 03; 147(35):31800-31810.
Ryu B, Avalon NE, Cuau M, Almaliti J, Din MO, Brennan C, Glukhov E, Knight R, Gerwick L, Gerwick WH. PMID: 40828982; PMCID: PMC12449831.
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2 Fields:
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Cells
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Quorum quenching of phenolic compounds from Leptolyngbya spp. MACC 32 via downregulation of the periplasmic receptor LuxP in Vibrio harveyi: Hinting a putative mechanism. World J Microbiol Biotechnol. 2025 Jun 27; 41(7):233.
Saranya M, Ryu B, Seena J, Silpa B, Ahna A, Naman CB, Glukhov E, Sajeevan TP, Singh ISB, Gerwick WH, Valsamma J. PMID: 40571855.
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AnimalsCells
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1H-NMR and molecular networking-guided dereplication of phloroglucinol meroterpenoids from Cleistocalyx operculatus buds as neuraminidase inhibitors. Phytochemistry. 2025 Jun; 234:114431.
Mai VH, Ponce-Zea JE, Doan TP, Ryu B, Cho HM, Yang H, Oh WK. PMID: 39952577.
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AnimalsCells
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MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration. Nucleic Acids Res. 2025 Jan 06; 53(D1):D678-D690.
Zdouc MM, Blin K, Louwen NLL, Navarro J, Loureiro C, Bader CD, Bailey CB, Barra L, Booth TJ, Bozhüyük KAJ, Cediel-Becerra JDD, Charlop-Powers Z, Chevrette MG, Chooi YH, D'Agostino PM, de Rond T, Del Pup E, Duncan KR, Gu W, Hanif N, Helfrich EJN, Jenner M, Katsuyama Y, Korenskaia A, Krug D, Libis V, Lund GA, Mantri S, Morgan KD, Owen C, Phan CS, Philmus B, Reitz ZL, Robinson SL, Singh KS, Teufel R, Tong Y, Tugizimana F, Ulanova D, Winter JM, Aguilar C, Akiyama DY, Al-Salihi SAA, Alanjary M, Alberti F, Aleti G, Alharthi SA, Rojo MYA, Arishi AA, Augustijn HE, Avalon NE, Avelar-Rivas JA, Axt KK, Barbieri HB, Barbosa JCJ, Barboza Segato LG, Barrett SE, Baunach M, Beemelmanns C, Beqaj D, Berger T, Bernaldo-Agüero J, Bettenbühl SM, Bielinski VA, Biermann F, Borges RM, Borriss R, Breitenbach M, Bretscher KM, Brigham MW, Buedenbender L, Bulcock BW, Cano-Prieto C, Capela J, Carrion VJ, Carter RS, Castelo-Branco R, Castro-Falcón G, Chagas FO, Charria-Girón E, Chaudhri AA, Chaudhry V, Choi H, Choi Y, Choupannejad R, Chromy J, Donahey MSC, Collemare J, Connolly JA, Creamer KE, Crüsemann M, Cruz AA, Cumsille A, Dallery JF, Damas-Ramos LC, Damiani T, de Kruijff M, Martín BD, Sala GD, Dillen J, Doering DT, Dommaraju SR, Durusu S, Egbert S, Ellerhorst M, Faussurier B, Fetter A, Feuermann M, Fewer DP, Foldi J, Frediansyah A, Garza EA, Gavriilidou A, Gentile A, Gerke J, Gerstmans H, Gomez-Escribano JP, González-Salazar LA, Grayson NE, Greco C, Gomez JEG, Guerra S, Flores SG, Gurevich A, Gutiérrez-García K, Hart L, Haslinger K, He B, Hebra T, Hemmann JL, Hindra H, Höing L, Holland DC, Holme JE, Horch T, Hrab P, Hu J, Huynh TH, Hwang JY, Iacovelli R, Iftime D, Iorio M, Jayachandran S, Jeong E, Jing J, Jung JJ, Kakumu Y, Kalkreuter E, Kang KB, Kang S, Kim W, Kim GJ, Kim H, Kim HU, Klapper M, Koetsier RA, Kollten C, Kovács ÁT, Kriukova Y, Kubach N, Kunjapur AM, Kushnareva AK, Kust A, Lamber J, Larralde M, Larsen NJ, Launay AP, Le NT, Lebeer S, Lee BT, Lee K, Lev KL, Li SM, Li YX, Licona-Cassani C, Lien A, Liu J, Lopez JAV, Machushynets NV, Macias MI, Mahmud T, Maleckis M, Martinez-Martinez AM, Mast Y, Maximo MF, McBride CM, McLellan RM, Bhatt KM, Melkonian C, Merrild A, Metsä-Ketelä M, Mitchell DA, Müller AV, Nguyen GS, Nguyen HT, Niedermeyer THJ, O'Hare JH, Ossowicki A, Ostash BO, Otani H, Padva L, Paliyal S, Pan X, Panghal M, Parade DS, Park J, Parra J, Rubio MP, Pham HT, Pidot SJ, Piel J, Pourmohsenin B, Rakhmanov M, Ramesh S, Rasmussen MH, Rego A, Reher R, Rice AJ, Rigolet A, Romero-Otero A, Rosas-Becerra LR, Rosiles PY, Rutz A, Ryu B, Sahadeo LA, Saldanha M, Salvi L, Sánchez-Carvajal E, Santos-Medellin C, Sbaraini N, Schoellhorn SM, Schumm C, Sehnal L, Selem N, Shah AD, Shishido TK, Sieber S, Silviani V, Singh G, Singh H, Sokolova N, Sonnenschein EC, Sosio M, Sowa ST, Steffen K, Stegmann E, Streiff AB, Strüder A, Surup F, Svenningsen T, Sweeney D, Szenei J, Tagirdzhanov A, Tan B, Tarnowski MJ, Terlouw BR, Rey T, Thome NU, Torres Ortega LR, Tørring T, Trindade M, Truman AW, Tvilum M, Udwary DW, Ulbricht C, Vader L, van Wezel GP, Walmsley M, Warnasinghe R, Weddeling HG, Weir ANM, Williams K, Williams SE, Witte TE, Rocca SMW, Yamada K, Yang D, Yang D, Yu J, Zhou Z, Ziemert N, Zimmer L, Zimmermann A, Zimmermann C, van der Hooft JJJ, Linington RG, Weber T, Medema MH. PMID: 39657789; PMCID: PMC11701617.
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67 Fields:
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Cells
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Correction to "Structure and Biosynthesis of Hectoramide B, a Linear Depsipeptide from Marine Cyanobacterium Moorena producens JHB Discovered via Coculture with Candida albicans". ACS Chem Biol. 2024 Dec 20; 19(12):2593.
Ngo TE, Ecker A, Ryu B, Guild A, Remmel A, Boudreau PD, Alexander KL, Naman CB, Glukhov E, Avalon NE, Shende VV, Thomas L, Dahesh S, Nizet V, Gerwick L, Gerwick WH. PMID: 39591979; PMCID: PMC11667661.
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Corrigendum to Mass spectrometry-based ginsenoside profiling: Recent applications, limitations, and perspectives [J. Ginseng Res. 48(2) (2024) 149-162]. J Ginseng Res. 2024 Nov; 48(6):628.
Kim HW, Kim DH, Ryu B, Chung YJ, Lee K, Chang Kim Y, Lee JW, Kim DH, Jang W, Cho W, Shim H, Sung SH, Yang TJ, Kang KB. PMID: 39583166; PMCID: PMC11583466.
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In Vitro and In Silico Analysis of PTP1B Inhibitors from Cleistocalyx operculatus Leaves and Their Effect on Glucose Uptake. Nutrients. 2024 Aug 24; 16(17).
Ponce-Zea JE, Ryu B, Lee JY, Park EJ, Mai VH, Doan TP, Lee HJ, Oh WK. PMID: 39275157; PMCID: PMC11397035.
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AnimalsCells
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Inhibition of protein tyrosine phosphatase 1B by serratane triterpenes from Huperzia serrata and their molecular docking study. Bioorg Med Chem Lett. 2024 Oct 01; 111:129904.
Ryu B, Ponce-Zea JE, Mai VH, Lee M, Hyun Sung S, Won Chin Y, Keun Oh W. PMID: 39069105.
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HumansCells
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Chalcone-Monoterpene Derivatives from the Buds of Cleistocalyx operculatus and Their Potential as Protein Tyrosine Phosphatase 1B Inhibitors. J Nat Prod. 2024 08 23; 87(8):1903-1913.
Mai VH, Ponce-Zea JE, Doan TP, Vu QH, Ryu B, Lee CH, Oh WK. PMID: 39046805.
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4 Fields:
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HumansAnimalsCells
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The Kavaratamides: Discovery of Linear Lipodepsipeptides from the Marine Cyanobacterium Moorena bouillonii Using a Comparative Chemogeographic Analysis. J Nat Prod. 2024 06 28; 87(6):1601-1610.
Ryu B, Glukhov E, Teixeira TR, Caffrey CR, Madiyan S, Joseph V, Avalon NE, Leber CA, Naman CB, Gerwick WH. PMID: 38832890; PMCID: PMC11217931.
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3 Fields:
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HumansCells
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Structure and Biosynthesis of Hectoramide B, a Linear Depsipeptide from Marine Cyanobacterium Moorena producens JHB Discovered via Coculture with Candida albicans. ACS Chem Biol. 2024 03 15; 19(3):619-628.
Ngo TE, Ecker A, Ryu B, Guild A, Remmel A, Boudreau PD, Alexander KL, Naman CB, Glukhov E, Avalon NE, Shende VV, Thomas L, Dahesh S, Nizet V, Gerwick L, Gerwick WH. PMID: 38330248; PMCID: PMC10949194.
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3 Fields:
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AnimalsCells
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Mass spectrometry-based ginsenoside profiling: Recent applications, limitations, and perspectives. J Ginseng Res. 2024 Mar; 48(2):149-162.
Kim HW, Kim DH, Ryu B, Chung YJ, Lee K, Kim YC, Lee JW, Kim DH, Jang W, Cho W, Shim H, Sung SH, Yang TJ, Kang KB. PMID: 38465223; PMCID: PMC10920005.
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1
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Metabolite Profiling of Allium hookeri Leaves Using UHPLC-qTOF-MS/MS and the Senomorphic Activity of Phenolamides. Nutrients. 2023 Dec 14; 15(24).
Doan TP, Zhang M, An JP, Ponce-Zea JE, Mai VH, Ryu B, Park EJ, Oh WK. PMID: 38140368; PMCID: PMC10747020.
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4 Fields:
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Animals
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Linderanidins A-F: Rare oligomeric flavonoids with an unusual C-3-C-4 linkage from the roots of Lindera erythrocarpa and their inhibitory activities on autophagy. Phytochemistry. 2023 Nov; 215:113836.
Ryu B, Park EJ, Doan TP, Cho HM, Ponce-Zea JE, Mai VH, Oveissi V, Oh WK. PMID: 37619899.
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HumansAnimalsCells
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Unique guanidine-conjugated catechins from the leaves of Alchornea rugosa and their autophagy modulating activity. Phytochemistry. 2023 Feb; 206:113521.
Doan TP, Park EJ, Ryu B, Cho HM, Yoon SJ, Jung GY, Thuong PT, Oh WK. PMID: 36435211.
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HumansAnimalsCells
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Insulin-mimetic activity of 23-glycosyl oleanane triterpenoids isolated from Gymnema latifolium. Phytochemistry. 2023 Jan; 205:113513.
Pham HT, Park EJ, Ryu B, Lee HJ, Doan TP, Cho HM, Pham TL, Oh WK. PMID: 36375631.
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Animals
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Antiviral activity of CAVAC-1901, a combination of 3 standardized medicinal plants, against highly pathogenic influenza A virus in chickens. Poult Sci. 2023 Feb; 102(2):102315.
Park EJ, Lee BW, Ryu B, Cho HM, Kim SK, Yoo SS, Kim E, Oh WK. PMID: 36473384; PMCID: PMC9720341.
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3 Fields:
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AnimalsCells
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Benzylisoquinoline Alkaloids from the Stems of Limacia scandens and Their Potential as Autophagy Inhibitors. Pharmaceuticals (Basel). 2022 Oct 28; 15(11).
Lee HJ, Park EJ, Ryu B, Cho HM, Nghiem DT, Pham HT, Pan CH, Oh WK. PMID: 36355504; PMCID: PMC9693505.
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Comparative transcriptome and metabolome analyses of four Panax species explore the dynamics of metabolite biosynthesis. J Ginseng Res. 2023 Jan; 47(1):44-53.
Koo H, Lee YS, Nguyen VB, Giang VNL, Koo HJ, Park HS, Mohanan P, Song YH, Ryu B, Kang KB, Sung SH, Yang TJ. PMID: 36644396; PMCID: PMC9834023.
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8
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Inhibition of a broad range of SARS-CoV-2 variants by antiviral phytochemicals in hACE2 mice. Antiviral Res. 2022 08; 204:105371.
Kim EH, Lee BW, Ryu B, Cho HM, Kim SM, Jang SG, Casel MAB, Rollon R, Yoo JS, Poo H, Oh WK, Choi YK. PMID: 35777669; PMCID: PMC9239703.
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3 Fields:
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HumansAnimalsCells
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Sesquiterpene lactone and its unique proaporphine hybrids from Magnolia grandiflora L. and their anti-inflammatory activity. Phytochemistry. 2022 Aug; 200:113211.
Cho HM, Park EJ, Park YJ, Ponce-Zea J, Mai VH, Doan TP, Ryu B, Chin YW, Oh WK. PMID: 35490776.
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Rugonidines A-F, Diastereomeric 1,6-Dioxa-7,9-diazaspiro[4.5]dec-7-en-8-amines from the Leaves of Alchornea rugosa. J Nat Prod. 2021 12 24; 84(12):3055-3063.
Doan TP, Park EJ, Cho HM, Ryu B, Lee BW, Thuong PT, Oh WK. PMID: 34797989.
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AnimalsCells
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SIRT1 Activation Enhancing 8,3'-Neolignans from the Twigs of Corylopsis coreana Uyeki. Plants (Basel). 2021 Aug 16; 10(8).
Kim HW, Jeon JB, Zhang M, Cho HM, Ryu B, Lee BW, Gerwick WH, Oh WK. PMID: 34451729; PMCID: PMC8398912.
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Meroterpenoids from the leaves of Psidium guajava (guava) cultivated in Korea using MS/MS-based molecular networking. Phytochemistry. 2021 Jun; 186:112723.
Ryu B, Cho HM, Zhang M, Lee BW, Doan TP, Park EJ, Lee HJ, Oh WK. PMID: 33799192.
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6 Fields:
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Animals
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Melicopteline A-E, Unusual Cyclopeptide Alkaloids with Antiviral Activity against Influenza A Virus from Melicope pteleifolia. J Org Chem. 2021 01 15; 86(2):1437-1447.
Lee BW, Quy Ha TK, Park EJ, Cho HM, Ryu B, Doan TP, Lee HJ, Oh WK. PMID: 33369410.
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4 Fields:
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AnimalsCells
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Phenolic Constituents of the Roots of Rhamnoneuron balansae with Senolytic Activity. J Nat Prod. 2020 12 24; 83(12):3661-3670.
Cho HM, Lee YR, Lee BW, Zhang M, Ryu B, Nghiem DT, Pham HT, Oh WK. PMID: 33256407.
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1 Fields:
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Animals
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Combined MS/MS-NMR Annotation Guided Discovery of Iris lactea var. chinensis Seed as a Source of Viral Neuraminidase Inhibitory Polyphenols. Molecules. 2020 Jul 26; 25(15).
Kim HW, Kim SS, Kang KB, Ryu B, Park E, Huh J, Jeon WK, Chae HS, Oh WK, Kim J, Sung SH, Chin YW. PMID: 32722555; PMCID: PMC7435927.
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5 Fields:
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HumansAnimalsCells
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Oleanane Triterpenoids from the Leaves of Gymnema inodorum and Their Insulin Mimetic Activities. J Nat Prod. 2020 04 24; 83(4):1265-1274.
An JP, Park EJ, Ryu B, Lee BW, Cho HM, Doan TP, Pham HTT, Oh WK. PMID: 32237726.
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13 Fields:
Translation:
AnimalsCells
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Development of a Building Block Strategy to Target the Classification, Identification, and Metabolite Profiling of Oleanane Triterpenoids in Gymnema sylvestre Using UHPLC-qTOF/MS. J Nat Prod. 2019 12 27; 82(12):3249-3266.
Pham HT, Kim HW, Han S, Ryu B, Doan TP, An JP, Tran VO, Oh WK. PMID: 31763839.
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2 Fields:
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AnimalsCells
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Exploring novel secondary metabolites from natural products using pre-processed mass spectral data. Sci Rep. 2019 11 22; 9(1):17430.
Kim HW, Choi SY, Jang HS, Ryu B, Sung SH, Yang H. PMID: 31758082; PMCID: PMC6874550.
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7 Fields:
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Oleanane hemiacetal glycosides from Gymnema latifolium and their inhibitory effects on protein tyrosine phosphatase 1B. Phytochemistry. 2020 Feb; 170:112181.
Pham HTT, Ryu B, Cho HM, Lee BW, Yang WY, Park EJ, Tran VO, Oh WK. PMID: 31727321.
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2 Fields:
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HumansAnimalsCells
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Eudesmane Glycosides from Ambrosia artemisiifolia (Common Ragweed) as Potential Neuroprotective Agents. J Nat Prod. 2019 05 24; 82(5):1128-1138.
An JP, Ha TKQ, Kim HW, Ryu B, Kim J, Park J, Lee CH, Oh WK. PMID: 31009220.
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10 Fields:
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AnimalsCells
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Identification of candidate UDP-glycosyltransferases involved in protopanaxadiol-type ginsenoside biosynthesis in Panax ginseng. Sci Rep. 2018 08 06; 8(1):11744.
Kang KB, Jayakodi M, Lee YS, Nguyen VB, Park HS, Koo HJ, Choi IY, Kim DH, Chung YJ, Ryu B, Lee DY, Sung SH, Yang TJ. PMID: 30082711; PMCID: PMC6078999.
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22 Fields:
Translation:
Animals
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Biflorin Ameliorates Memory Impairments Induced by Cholinergic Blockade in Mice. Biomol Ther (Seoul). 2017 May 01; 25(3):249-258.
Jeon SJ, Kim B, Ryu B, Kim E, Lee S, Jang DS, Ryu JH. PMID: 27829270; PMCID: PMC5424634.
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1
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A new acetophenone glycoside from the flower buds of Syzygium aromaticum (cloves). Fitoterapia. 2016 Dec; 115:46-51.
Ryu B, Kim HM, Woo JH, Choi JH, Jang DS. PMID: 27702665.
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7 Fields:
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HumansAnimalsCells
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Identification of Neuroactive Constituents of the Ethyl Acetate Fraction from Cyperi Rhizoma Using Bioactivity-Guided Fractionation. Biomol Ther (Seoul). 2016 Jul 01; 24(4):438-45.
Sim Y, Choi JG, Gu PS, Ryu B, Kim JH, Kang I, Jang DS, Oh MS. PMID: 27350341; PMCID: PMC4930289.
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1
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New Flavonol Glucuronides from the Flower Buds of Syzygium aromaticum (Clove). J Agric Food Chem. 2016 Apr 20; 64(15):3048-53.
Ryu B, Kim HM, Lee JS, Lee CK, Sezirahiga J, Woo JH, Choi JH, Jang DS. PMID: 27045836.
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11 Fields:
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HumansAnimalsCells
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Swertisin, a C-glucosylflavone, ameliorates scopolamine-induced memory impairment in mice with its adenosine A1 receptor antagonistic property. Behav Brain Res. 2016 06 01; 306:137-45.
Lee HE, Jeon SJ, Ryu B, Park SJ, Ko SY, Lee Y, Kim E, Lee S, Kim H, Jang DS, Ryu JH. PMID: 26996316.
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10 Fields:
Translation:
AnimalsCells
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Biflorin, Isolated from the Flower Buds of Syzygium aromaticum L., Suppresses LPS-Induced Inflammatory Mediators via STAT1 Inactivation in Macrophages and Protects Mice from Endotoxin Shock. J Nat Prod. 2016 Apr 22; 79(4):711-20.
Lee HH, Shin JS, Lee WS, Ryu B, Jang DS, Lee KT. PMID: 26977531.
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11 Fields:
Translation:
AnimalsCells
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Constituents of PG201 (Layla(®)), a multi-component phytopharmaceutical, with inhibitory activity on LPS-induced nitric oxide and prostaglandin E2 productions in macrophages. Arch Pharm Res. 2016 Feb; 39(2):231-239.
Kim HJ, Kim HM, Ryu B, Lee WS, Shin JS, Lee KT, Jang DS. PMID: 26306655.
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5 Fields:
Translation:
AnimalsCells
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Constituents of the stem barks of Ailanthus altissima and their potential to inhibit LPS-induced nitric oxide production. Bioorg Med Chem Lett. 2015 Mar 01; 25(5):1017-20.
Kim HM, Kim SJ, Kim HY, Ryu B, Kwak H, Hur J, Choi JH, Jang DS. PMID: 25666824.
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PubMed Mentions:
11 Fields:
Translation:
AnimalsCells