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SPECTRE: A Multimodal Spectral Transformer for Small Molecule Annotation. J Chem Inf Model. 2026 Mar 09; 66(5):2501-2512.
Xu W, Ryu B, Tong A, Mao HH, Kim H, Zhao JJ, Zhang C, Xu Y, Wang M, Gerwick WH, Cottrell GW. PMID: 41740590; PMCID: PMC12977036.
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Philippine marine macroalgae as sources of bioactive natural products and macronutrients for food applications. Food Res Int. 2026 Mar 31; 228:118240.
Batucan JD, Ryu B, Malto ZBL, Narvarte BCV, Hinaloc LAR, Patoc RRA, Glukhov E, Gerwick L, Gerwick WH, Salvador-Reyes LA, Roleda MY. PMID: 41703799.
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HumansAnimalsCells
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2 Fields:
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Cells
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Quorum quenching of phenolic compounds from Leptolyngbya spp. MACC 32 via downregulation of the periplasmic receptor LuxP in Vibrio harveyi: Hinting a putative mechanism. World J Microbiol Biotechnol. 2025 Jun 27; 41(7):233.
Saranya M, Ryu B, Seena J, Silpa B, Ahna A, Naman CB, Glukhov E, Sajeevan TP, Singh ISB, Gerwick WH, Valsamma J. PMID: 40571855.
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AnimalsCells
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1H-NMR and molecular networking-guided dereplication of phloroglucinol meroterpenoids from Cleistocalyx operculatus buds as neuraminidase inhibitors. Phytochemistry. 2025 Jun; 234:114431.
Mai VH, Ponce-Zea JE, Doan TP, Ryu B, Cho HM, Yang H, Oh WK. PMID: 39952577.
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MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration. Nucleic Acids Res. 2025 Jan 06; 53(D1):D678-D690.
Zdouc MM, Blin K, Louwen NLL, Navarro J, Loureiro C, Bader CD, Bailey CB, Barra L, Booth TJ, Bozhüyük KAJ, Cediel-Becerra JDD, Charlop-Powers Z, Chevrette MG, Chooi YH, D'Agostino PM, de Rond T, Del Pup E, Duncan KR, Gu W, Hanif N, Helfrich EJN, Jenner M, Katsuyama Y, Korenskaia A, Krug D, Libis V, Lund GA, Mantri S, Morgan KD, Owen C, Phan CS, Philmus B, Reitz ZL, Robinson SL, Singh KS, Teufel R, Tong Y, Tugizimana F, Ulanova D, Winter JM, Aguilar C, Akiyama DY, Al-Salihi SAA, Alanjary M, Alberti F, Aleti G, Alharthi SA, Rojo MYA, Arishi AA, Augustijn HE, Avalon NE, Avelar-Rivas JA, Axt KK, Barbieri HB, Barbosa JCJ, Barboza Segato LG, Barrett SE, Baunach M, Beemelmanns C, Beqaj D, Berger T, Bernaldo-Agüero J, Bettenbühl SM, Bielinski VA, Biermann F, Borges RM, Borriss R, Breitenbach M, Bretscher KM, Brigham MW, Buedenbender L, Bulcock BW, Cano-Prieto C, Capela J, Carrion VJ, Carter RS, Castelo-Branco R, Castro-Falcón G, Chagas FO, Charria-Girón E, Chaudhri AA, Chaudhry V, Choi H, Choi Y, Choupannejad R, Chromy J, Donahey MSC, Collemare J, Connolly JA, Creamer KE, Crüsemann M, Cruz AA, Cumsille A, Dallery JF, Damas-Ramos LC, Damiani T, de Kruijff M, Martín BD, Sala GD, Dillen J, Doering DT, Dommaraju SR, Durusu S, Egbert S, Ellerhorst M, Faussurier B, Fetter A, Feuermann M, Fewer DP, Foldi J, Frediansyah A, Garza EA, Gavriilidou A, Gentile A, Gerke J, Gerstmans H, Gomez-Escribano JP, González-Salazar LA, Grayson NE, Greco C, Gomez JEG, Guerra S, Flores SG, Gurevich A, Gutiérrez-García K, Hart L, Haslinger K, He B, Hebra T, Hemmann JL, Hindra H, Höing L, Holland DC, Holme JE, Horch T, Hrab P, Hu J, Huynh TH, Hwang JY, Iacovelli R, Iftime D, Iorio M, Jayachandran S, Jeong E, Jing J, Jung JJ, Kakumu Y, Kalkreuter E, Kang KB, Kang S, Kim W, Kim GJ, Kim H, Kim HU, Klapper M, Koetsier RA, Kollten C, Kovács ÁT, Kriukova Y, Kubach N, Kunjapur AM, Kushnareva AK, Kust A, Lamber J, Larralde M, Larsen NJ, Launay AP, Le NT, Lebeer S, Lee BT, Lee K, Lev KL, Li SM, Li YX, Licona-Cassani C, Lien A, Liu J, Lopez JAV, Machushynets NV, Macias MI, Mahmud T, Maleckis M, Martinez-Martinez AM, Mast Y, Maximo MF, McBride CM, McLellan RM, Bhatt KM, Melkonian C, Merrild A, Metsä-Ketelä M, Mitchell DA, Müller AV, Nguyen GS, Nguyen HT, Niedermeyer THJ, O'Hare JH, Ossowicki A, Ostash BO, Otani H, Padva L, Paliyal S, Pan X, Panghal M, Parade DS, Park J, Parra J, Rubio MP, Pham HT, Pidot SJ, Piel J, Pourmohsenin B, Rakhmanov M, Ramesh S, Rasmussen MH, Rego A, Reher R, Rice AJ, Rigolet A, Romero-Otero A, Rosas-Becerra LR, Rosiles PY, Rutz A, Ryu B, Sahadeo LA, Saldanha M, Salvi L, Sánchez-Carvajal E, Santos-Medellin C, Sbaraini N, Schoellhorn SM, Schumm C, Sehnal L, Selem N, Shah AD, Shishido TK, Sieber S, Silviani V, Singh G, Singh H, Sokolova N, Sonnenschein EC, Sosio M, Sowa ST, Steffen K, Stegmann E, Streiff AB, Strüder A, Surup F, Svenningsen T, Sweeney D, Szenei J, Tagirdzhanov A, Tan B, Tarnowski MJ, Terlouw BR, Rey T, Thome NU, Torres Ortega LR, Tørring T, Trindade M, Truman AW, Tvilum M, Udwary DW, Ulbricht C, Vader L, van Wezel GP, Walmsley M, Warnasinghe R, Weddeling HG, Weir ANM, Williams K, Williams SE, Witte TE, Rocca SMW, Yamada K, Yang D, Yang D, Yu J, Zhou Z, Ziemert N, Zimmer L, Zimmermann A, Zimmermann C, van der Hooft JJJ, Linington RG, Weber T, Medema MH. PMID: 39657789; PMCID: PMC11701617.
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Correction to "Structure and Biosynthesis of Hectoramide B, a Linear Depsipeptide from Marine Cyanobacterium Moorena producens JHB Discovered via Coculture with Candida albicans". ACS Chem Biol. 2024 Dec 20; 19(12):2593.
Ngo TE, Ecker A, Ryu B, Guild A, Remmel A, Boudreau PD, Alexander KL, Naman CB, Glukhov E, Avalon NE, Shende VV, Thomas L, Dahesh S, Nizet V, Gerwick L, Gerwick WH. PMID: 39591979; PMCID: PMC11667661.
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Corrigendum to Mass spectrometry-based ginsenoside profiling: Recent applications, limitations, and perspectives [J. Ginseng Res. 48(2) (2024) 149-162]. J Ginseng Res. 2024 Nov; 48(6):628.
Kim HW, Kim DH, Ryu B, Chung YJ, Lee K, Chang Kim Y, Lee JW, Kim DH, Jang W, Cho W, Shim H, Sung SH, Yang TJ, Kang KB. PMID: 39583166; PMCID: PMC11583466.
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Inhibition of protein tyrosine phosphatase 1B by serratane triterpenes from Huperzia serrata and their molecular docking study. Bioorg Med Chem Lett. 2024 Oct 01; 111:129904.
Ryu B, Ponce-Zea JE, Mai VH, Lee M, Hyun Sung S, Won Chin Y, Keun Oh W. PMID: 39069105.
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Chalcone-Monoterpene Derivatives from the Buds of Cleistocalyx operculatus and Their Potential as Protein Tyrosine Phosphatase 1B Inhibitors. J Nat Prod. 2024 Aug 23; 87(8):1903-1913.
Mai VH, Ponce-Zea JE, Doan TP, Vu QH, Ryu B, Lee CH, Oh WK. PMID: 39046805.
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4 Fields:
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The Kavaratamides: Discovery of Linear Lipodepsipeptides from the Marine Cyanobacterium Moorena bouillonii Using a Comparative Chemogeographic Analysis. J Nat Prod. 2024 06 28; 87(6):1601-1610.
Ryu B, Glukhov E, Teixeira TR, Caffrey CR, Madiyan S, Joseph V, Avalon NE, Leber CA, Naman CB, Gerwick WH. PMID: 38832890; PMCID: PMC11217931.
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Structure and Biosynthesis of Hectoramide B, a Linear Depsipeptide from Marine Cyanobacterium Moorena producens JHB Discovered via Coculture with Candida albicans. ACS Chem Biol. 2024 03 15; 19(3):619-628.
Ngo TE, Ecker A, Ryu B, Guild A, Remmel A, Boudreau PD, Alexander KL, Naman CB, Glukhov E, Avalon NE, Shende VV, Thomas L, Dahesh S, Nizet V, Gerwick L, Gerwick WH. PMID: 38330248; PMCID: PMC10949194.
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3 Fields:
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Mass spectrometry-based ginsenoside profiling: Recent applications, limitations, and perspectives. J Ginseng Res. 2024 Mar; 48(2):149-162.
Kim HW, Kim DH, Ryu B, Chung YJ, Lee K, Kim YC, Lee JW, Kim DH, Jang W, Cho W, Shim H, Sung SH, Yang TJ, Kang KB. PMID: 38465223; PMCID: PMC10920005.
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Inhibition of a broad range of SARS-CoV-2 variants by antiviral phytochemicals in hACE2 mice. Antiviral Res. 2022 08; 204:105371.
Kim EH, Lee BW, Ryu B, Cho HM, Kim SM, Jang SG, Casel MAB, Rollon R, Yoo JS, Poo H, Oh WK, Choi YK. PMID: 35777669; PMCID: PMC9239703.
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3 Fields:
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Rugonidines A-F, Diastereomeric 1,6-Dioxa-7,9-diazaspiro[4.5]dec-7-en-8-amines from the Leaves of Alchornea rugosa. J Nat Prod. 2021 12 24; 84(12):3055-3063.
Doan TP, Park EJ, Cho HM, Ryu B, Lee BW, Thuong PT, Oh WK. PMID: 34797989.
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SIRT1 Activation Enhancing 8,3'-Neolignans from the Twigs of Corylopsis coreana Uyeki. Plants (Basel). 2021 Aug 16; 10(8).
Kim HW, Jeon JB, Zhang M, Cho HM, Ryu B, Lee BW, Gerwick WH, Oh WK. PMID: 34451729; PMCID: PMC8398912.
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Combined MS/MS-NMR Annotation Guided Discovery of Iris lactea var. chinensis Seed as a Source of Viral Neuraminidase Inhibitory Polyphenols. Molecules. 2020 Jul 26; 25(15).
Kim HW, Kim SS, Kang KB, Ryu B, Park E, Huh J, Jeon WK, Chae HS, Oh WK, Kim J, Sung SH, Chin YW. PMID: 32722555; PMCID: PMC7435927.
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5 Fields:
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Development of a Building Block Strategy to Target the Classification, Identification, and Metabolite Profiling of Oleanane Triterpenoids in Gymnema sylvestre Using UHPLC-qTOF/MS. J Nat Prod. 2019 12 27; 82(12):3249-3266.
Pham HT, Kim HW, Han S, Ryu B, Doan TP, An JP, Tran VO, Oh WK. PMID: 31763839.
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2 Fields:
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Exploring novel secondary metabolites from natural products using pre-processed mass spectral data. Sci Rep. 2019 11 22; 9(1):17430.
Kim HW, Choi SY, Jang HS, Ryu B, Sung SH, Yang H. PMID: 31758082; PMCID: PMC6874550.
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Eudesmane Glycosides from Ambrosia artemisiifolia (Common Ragweed) as Potential Neuroprotective Agents. J Nat Prod. 2019 05 24; 82(5):1128-1138.
An JP, Ha TKQ, Kim HW, Ryu B, Kim J, Park J, Lee CH, Oh WK. PMID: 31009220.
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10 Fields:
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AnimalsCells
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New Flavonol Glucuronides from the Flower Buds of Syzygium aromaticum (Clove). J Agric Food Chem. 2016 Apr 20; 64(15):3048-53.
Ryu B, Kim HM, Lee JS, Lee CK, Sezirahiga J, Woo JH, Choi JH, Jang DS. PMID: 27045836.
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11 Fields:
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Constituents of PG201 (Layla(®)), a multi-component phytopharmaceutical, with inhibitory activity on LPS-induced nitric oxide and prostaglandin E2 productions in macrophages. Arch Pharm Res. 2016 Feb; 39(2):231-239.
Kim HJ, Kim HM, Ryu B, Lee WS, Shin JS, Lee KT, Jang DS. PMID: 26306655.
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5 Fields:
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AnimalsCells