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    Emma Farley

    TitleAssistant Professor
    SchoolUniversity of California, San Diego
    DepartmentMedicine
    Address9500 Gilman Drive #0655
    CA La Jolla 92093
    Phone858-246-2552
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      Collapse Biography 
      Collapse Education and Training
      Princeton UniversityPostdoc2015Lewis Sigler Institute for Integrative Genomics
      UC BerkeleyPostdoc2012Molecular and Cellular Biology
      Imperial College LondonPhD2011MRC Clinical Sciences Center
      Oxford UniversityMBiochem2007Department of Biochemistry

      Collapse Research 
      Collapse Research Activities and Funding
      Deciphering the regulatory principles governing enhancer specificity
      NIH/NHGRI DP2HG010013Sep 30, 2017 - Jun 30, 2022
      Role: Principal Investigator

      Collapse ORNG Applications 
      Collapse Featured Publications
      Collapse Websites
      Collapse Twitter

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
      List All   |   Timeline
      1. D Antonio M, Weghorn D, D Antonio-Chronowska A, Coulet F, Olson KM, DeBoever C, Drees F, Arias A, Alakus H, Richardson AL, Schwab RB, Farley E, Sunyaev SR, Frazer KA. Identifying DNase I hypersensitive sites as driver distal regulatory elements in breast cancer. Nat Commun. 2017 Sep 05; 8(1):436. PMID: 28874753.
        View in: PubMed
      2. Farley E, Olson KM, Zhang W, Rokhsar DS, Levine MS. Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers. Proc Natl Acad Sci U S A. 2016 06 07; 113(23):6508-13. PMID: 27155014; PMCID: PMC4988596 [Available on 12/07/16].
      3. Farley E, Olson KM, Zhang W, Brandt AJ, Rokhsar DS, Levine MS. Suboptimization of developmental enhancers. Science. 2015 Oct 16; 350(6258):325-8. PMID: 26472909; PMCID: PMC4970741 [Available on 10/16/16].
      4. Farley E, Olson KM, Levine MS. Regulatory Principles Governing Tissue Specificity of Developmental Enhancers. Cold Spring Harb Symp Quant Biol. 2015; 80:27-32. PMID: 27325706; PMCID: PMC4970742.
      5. Farley E. Gene transfer in developing chick embryos: in ovo electroporation. Methods Mol Biol. 2013; 1018:141-50. PMID: 23681625.
        View in: PubMed
      6. Farley E, Levine M. HOT DNAs: a novel class of developmental enhancers. Genes Dev. 2012 May 01; 26(9):873-6. PMID: 22549952; PMCID: PMC3347785.
      7. Gennet N, Gale E, Nan X, Farley E, Takacs K, Oberwallner B, Chambers D, Li M. Doublesex and mab-3-related transcription factor 5 promotes midbrain dopaminergic identity in pluripotent stem cells by enforcing a ventral-medial progenitor fate. Proc Natl Acad Sci U S A. 2011 May 31; 108(22):9131-6. PMID: 21576465; PMCID: PMC3107330.
      8. Farley E, Gale E, Chambers D, Li M. Effects of in ovo electroporation on endogenous gene expression: genome-wide analysis. Neural Dev. 2011 Apr 28; 6:17. PMID: 21527010; PMCID: PMC3105949.