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Hiroko Matsui

Title(s)CMPTL AND DATA SCI RSCH SPEC 3, Institute of Genomic Medicine
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #0761
La Jolla CA 92093
Phone8/2-46--0204
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Properties of structural variants and short tandem repeats associated with gene expression and complex traits. Nat Commun. 2020 06 10; 11(1):2927. Jakubosky D, D'Antonio M, Bonder MJ, Smail C, Donovan MKR, Young Greenwald WW, Matsui H, D'Antonio-Chronowska A, Stegle O, Smith EN, Montgomery SB, DeBoever C, Frazer KA. PMID: 32522982.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats. Nat Commun. 2020 06 10; 11(1):2928. Jakubosky D, Smith EN, D'Antonio M, Jan Bonder M, Young Greenwald WW, D'Antonio-Chronowska A, Matsui H, Stegle O, Montgomery SB, DeBoever C, Frazer KA. PMID: 32522985.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    3. Parechovirus-A3 encephalitis presenting with focal seizure mimicking herpes simplex virus infection. J Infect Chemother. 2020 Jul; 26(7):736-740. Arai S, Yamanaka T, Kasai M, Fukuyama T, Aizawa Y, Matsui K, Sato M, Matsui H, Saitoh A. PMID: 32201195.
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    4. Systematic genetic analysis of the MHC region reveals mechanistic underpinnings of HLA type associations with disease. Elife. 2019 11 20; 8. D'Antonio M, Reyna J, Jakubosky D, Donovan MK, Bonder MJ, Matsui H, Stegle O, Nariai N, D'Antonio-Chronowska A, Frazer KA. PMID: 31746734.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    5. Association of Human iPSC Gene Signatures and X Chromosome Dosage with Two Distinct Cardiac Differentiation Trajectories. Stem Cell Reports. 2019 11 12; 13(5):924-938. D'Antonio-Chronowska A, Donovan MKR, Young Greenwald WW, Nguyen JP, Fujita K, Hashem S, Matsui H, Soncin F, Parast M, Ward MC, Coulet F, Smith EN, Adler E, D'Antonio M, Frazer KA. PMID: 31668852.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    6. Two iPSC lines generated from the bone marrow of a relapsed/refractory AML patient display normal karyotypes and myeloid differentiation potential. Stem Cell Res. 2019 12; 41:101587. Yamasaki AE, King NE, Matsui H, Jepsen K, Panopoulos AD. PMID: 31739201.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    7. Allele-specific NKX2-5 binding underlies multiple genetic associations with human electrocardiographic traits. Nat Genet. 2019 10; 51(10):1506-1517. Benaglio P, D'Antonio-Chronowska A, Ma W, Yang F, Young Greenwald WW, Donovan MKR, DeBoever C, Li H, Drees F, Singhal S, Matsui H, van Setten J, Sotoodehnia N, Gaulton KJ, Smith EN, D'Antonio M, Rosenfeld MG, Frazer KA. PMID: 31570892.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    8. Human iPSC-Derived Retinal Pigment Epithelium: A Model System for Prioritizing and Functionally Characterizing Causal Variants at AMD Risk Loci. Stem Cell Reports. 2019 06 11; 12(6):1342-1353. Smith EN, D'Antonio-Chronowska A, Greenwald WW, Borja V, Aguiar LR, Pogue R, Matsui H, Benaglio P, Borooah S, D'Antonio M, Ayyagari R, Frazer KA. PMID: 31080113.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    9. Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression. Nat Commun. 2019 03 05; 10(1):1054. Greenwald WW, Li H, Benaglio P, Jakubosky D, Matsui H, Schmitt A, Selvaraj S, D'Antonio M, D'Antonio-Chronowska A, Smith EN, Frazer KA. PMID: 30837461.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    10. Identification of Common and Rare Genetic Variation Associated With Plasma Protein Levels Using Whole-Exome Sequencing and Mass Spectrometry. Circ Genom Precis Med. 2018 12; 11(12):e002170. Solomon T, Lapek JD, Jensen SB, Greenwald WW, Hindberg K, Matsui H, Latysheva N, Braekken SK, Gonzalez DJ, Frazer KA, Smith EN, Hansen JB. PMID: 30562114.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    11. Insights into the Mutational Burden of Human Induced Pluripotent Stem Cells from an Integrative Multi-Omics Approach. Cell Rep. 2018 07 24; 24(4):883-894. D'Antonio M, Benaglio P, Jakubosky D, Greenwald WW, Matsui H, Donovan MKR, Li H, Smith EN, D'Antonio-Chronowska A, Frazer KA. PMID: 30044985.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    12. IFT88 mutations identified in individuals with non-syndromic recessive retinal degeneration result in abnormal ciliogenesis. Hum Genet. 2018 Jul; 137(6-7):447-458. Chekuri A, Guru AA, Biswas P, Branham K, Borooah S, Soto-Hermida A, Hicks M, Khan NW, Matsui H, Alapati A, Raghavendra PB, Roosing S, Sarangapani S, Mathavan S, Telenti A, Heckenlively JR, Riazuddin SA, Frazer KA, Sieving PA, Ayyagari R. PMID: 29978320.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    13. A mutation in IFT43 causes non-syndromic recessive retinal degeneration. Hum Mol Genet. 2017 12 01; 26(23):4741-4751. Biswas P, Duncan JL, Ali M, Matsui H, Naeem MA, Raghavendra PB, Frazer KA, Arts HH, Riazuddin S, Akram J, Hejtmancik JF, Riazuddin SA, Ayyagari R. PMID: 28973684.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    14. Correction: Gustafson et al., Whole Genome Sequencing Revealed Mutations in Two Independent Genes as the Underlying Cause of Retinal Degeneration in an Ashkenazi Jewish Pedigree. Genes 2017, 8, 210. Genes (Basel). 2017 10 23; 8(10). Gustafson K, Duncan JL, Biswas P, Soto-Hermida A, Matsui H, Jakubosky D, Suk J, Telenti A, Frazer KA, Ayyagari R. PMID: 29065517.
      View in: PubMed   Mentions:    Fields:    
    15. Whole Genome Sequencing Revealed Mutations in Two Independent Genes as the Underlying Cause of Retinal Degeneration in an Ashkenazi Jewish Pedigree. Genes (Basel). 2017 08 24; 8(9). Gustafson K, Duncan JL, Biswas P, Soto-Hermida A, Matsui H, Jakubosky D, Suk J, Telenti A, Frazer KA, Ayyagari R. PMID: 28837078.
      View in: PubMed   Mentions: 4     Fields:    
    16. High-Throughput and Cost-Effective Characterization of Induced Pluripotent Stem Cells. Stem Cell Reports. 2017 04 11; 8(4):1101-1111. D'Antonio M, Woodruff G, Nathanson JL, D'Antonio-Chronowska A, Arias A, Matsui H, Williams R, Herrera C, Reyna SM, Yeo GW, Goldstein LSB, Panopoulos AD, Frazer KA. PMID: 28410643.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    17. iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types. Stem Cell Reports. 2017 04 11; 8(4):1086-1100. Panopoulos AD, D'Antonio M, Benaglio P, Williams R, Hashem SI, Schuldt BM, DeBoever C, Arias AD, Garcia M, Nelson BC, Harismendy O, Jakubosky DA, Donovan MKR, Greenwald WW, Farnam K, Cook M, Borja V, Miller CA, Grinstein JD, Drees F, Okubo J, Diffenderfer KE, Hishida Y, Modesto V, Dargitz CT, Feiring R, Zhao C, Aguirre A, McGarry TJ, Matsui H, Li H, Reyna J, Rao F, O'Connor DT, Yeo GW, Evans SM, Chi NC, Jepsen K, Nariai N, Müller FJ, Goldstein LSB, Izpisua Belmonte JC, Adler E, Loring JF, Berggren WT, D'Antonio-Chronowska A, Smith EN, Frazer KA. PMID: 28410642.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    18. Large-Scale Profiling Reveals the Influence of Genetic Variation on Gene Expression in Human Induced Pluripotent Stem Cells. Cell Stem Cell. 2017 04 06; 20(4):533-546.e7. DeBoever C, Li H, Jakubosky D, Benaglio P, Reyna J, Olson KM, Huang H, Biggs W, Sandoval E, D'Antonio M, Jepsen K, Matsui H, Arias A, Ren B, Nariai N, Smith EN, D'Antonio-Chronowska A, Farley EK, Frazer KA. PMID: 28388430.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    19. Establishing the involvement of the novel gene AGBL5 in retinitis pigmentosa by whole genome sequencing. Physiol Genomics. 2016 12 01; 48(12):922-927. Branham K, Matsui H, Biswas P, Guru AA, Hicks M, Suk JJ, Li H, Jakubosky D, Long T, Telenti A, Nariai N, Heckenlively JR, Frazer KA, Sieving PA, Ayyagari R. PMID: 27764769.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    20. Associations Between Common and Rare Exonic Genetic Variants and Serum Levels of 20 Cardiovascular-Related Proteins: The Tromsø Study. Circ Cardiovasc Genet. 2016 Aug; 9(4):375-83. Solomon T, Smith EN, Matsui H, Braekkan SK, Wilsgaard T, Njølstad I, Mathiesen EB, Hansen JB, Frazer KA. PMID: 27329291.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    21. Dynamic epigenetic regulation of glioblastoma tumorigenicity through LSD1 modulation of MYC expression. Proc Natl Acad Sci U S A. 2015 Jul 28; 112(30):E4055-64. Kozono D, Li J, Nitta M, Sampetrean O, Gonda D, Kushwaha DS, Merzon D, Ramakrishnan V, Zhu S, Zhu K, Matsui H, Harismendy O, Hua W, Mao Y, Kwon CH, Saya H, Nakano I, Pizzo DP, VandenBerg SR, Chen CC. PMID: 26159421.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimalsCells
    22. Effective filtering strategies to improve data quality from population-based whole exome sequencing studies. BMC Bioinformatics. 2014 May 02; 15:125. Carson AR, Smith EN, Matsui H, Brækkan SK, Jepsen K, Hansen JB, Frazer KA. PMID: 24884706.
      View in: PubMed   Mentions: 31     Fields:    Translation:Humans
    23. Evaluation of ultra-deep targeted sequencing for personalized breast cancer care. Breast Cancer Res. 2013 Dec 10; 15(6):R115. Harismendy O, Schwab RB, Alakus H, Yost SE, Matsui H, Hasteh F, Wallace AM, Park HL, Madlensky L, Parker B, Carpenter PM, Jepsen K, Anton-Culver H, Frazer KA. PMID: 24326041.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    24. Mutascope: sensitive detection of somatic mutations from deep amplicon sequencing. Bioinformatics. 2013 Aug 01; 29(15):1908-9. Yost SE, Alakus H, Matsui H, Schwab RB, Jepsen K, Frazer KA, Harismendy O. PMID: 23712659.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    25. Low micromolar zinc exerts cytotoxic action under H2O2-induced oxidative stress: excessive increase in intracellular Zn2+ concentration. Toxicology. 2010 Sep 30; 276(1):27-32. Matsui H, Oyama TM, Okano Y, Hashimoto E, Kawanai T, Oyama Y. PMID: 20603178.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    26. Cytometric analysis of cytotoxicity of polyphenols and related phenolics to rat thymocytes: potent cytotoxicity of resveratrol to normal cells. Basic Clin Pharmacol Toxicol. 2009 Jun; 104(6):455-62. Fujimoto A, Sakanashi Y, Matsui H, Oyama T, Nishimura Y, Masuda T, Oyama Y. PMID: 19389048.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    27. Heart development before beating. Anat Sci Int. 2009 Sep; 84(3):67-76. Nakajima Y, Sakabe M, Matsui H, Sakata H, Yanagawa N, Yamagishi T. PMID: 19259768.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    28. ROCK1 expression is regulated by TGFbeta3 and ALK2 during valvuloseptal endocardial cushion formation. Anat Rec (Hoboken). 2008 Jul; 291(7):845-57. Sakabe M, Sakata H, Matsui H, Ikeda K, Yamagishi T, Nakajima Y. PMID: 18461597.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    29. Possible use of quercetin, an antioxidant, for protection of cells suffering from overload of intracellular Ca2+: a model experiment. Life Sci. 2008 Aug 01; 83(5-6):164-9. Sakanashi Y, Oyama K, Matsui H, Oyama TB, Oyama TM, Nishimura Y, Sakai H, Oyama Y. PMID: 18586279.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    30. Imidazole antifungals, but not triazole antifungals, increase membrane Zn2+ permeability in rat thymocytes Possible contribution to their cytotoxicity. Toxicology. 2008 Jun 27; 248(2-3):142-50. Matsui H, Sakanashi Y, Oyama TM, Oyama Y, Yokota S, Ishida S, Okano Y, Oyama TB, Nishimura Y. PMID: 18468760.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    31. Induction of initial heart alpha-actin, smooth muscle alpha-actin, in chick pregastrula epiblast: the role of hypoblast and fibroblast growth factor-8. Dev Growth Differ. 2008 Mar; 50(3):143-57. Matsui H, Sakabe M, Sakata H, Yanagawa N, Ikeda K, Yamagishi T, Nakajima Y. PMID: 18312428.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    32. Some characteristics of quercetin-induced cytotoxicity on rat thymocytes under in vitro condition. Toxicol In Vitro. 2008 Jun; 22(4):1002-7. Nishimura Y, Oyama TB, Sakanashi Y, Oyama TM, Matsui H, Okano Y, Oyama Y. PMID: 18356015.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    33. Clotrimazole, an antifungal drug possessing diverse actions, increases membrane permeation of cadmium in rat thymocytes. Toxicol In Vitro. 2007 Dec; 21(8):1505-12. Oyama TM, Oyama TB, Oyama K, Sakanashi Y, Morimoto M, Matsui H, Oyama Y. PMID: 17703912.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    34. Synergic cytotoxic action induced by simultaneous application of zinc and clotrimazole in rat thymocytes. Toxicol Lett. 2007 Jul 10; 171(3):138-45. Oyama Y, Matsui H, Morimoto M, Sakanashi Y, Nishimura Y, Ishida S, Okano Y. PMID: 17583447.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    35. Some characteristics of fluoride-induced cell death in rat thymocytes: cytotoxicity of sodium fluoride. Toxicol In Vitro. 2007 Sep; 21(6):1113-20. Matsui H, Morimoto M, Horimoto K, Nishimura Y. PMID: 17544615.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    36. Rho kinase inhibitor Y27632 affects initial heart myofibrillogenesis in cultured chick blastoderm. Dev Dyn. 2007 Feb; 236(2):461-72. Sakata H, Sakabe M, Matsui H, Kawada N, Nakatani K, Ikeda K, Yamagishi T, Nakajima Y. PMID: 17195179.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    37. Heart myofibrillogenesis occurs in isolated chick posterior blastoderm: a culture model. Acta Histochem Cytochem. 2006 Oct 30; 39(5):139-44. Matsui H, Sakabe M, Sakata H, Nakatani K, Ikeda K, Fukui M, Ando K, Yamagishi T, Nakajima Y. PMID: 17327900.
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    38. Clotrimazole, an antifungal drug possessing diverse actions, increases the vulnerability to cadmium in lymphocytes dissociated from rat thymus. Toxicology. 2006 Dec 07; 228(2-3):269-79. Oyama TM, Oyama TB, Oyama K, Matsui H, Horimoto K, Nishimura Y, Oyama Y. PMID: 17055140.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    39. Reciprocal effects of glucose on the process of cell death induced by calcium ionophore or H2O2 in rat lymphocytes. Toxicology. 2006 Aug 15; 225(2-3):97-108. Horimoto K, Nishimura Y, Oyama TM, Onoda K, Matsui H, Oyama TB, Kanemaru K, Masuda T, Oyama Y. PMID: 16784802.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    40. Propofol, an anesthetic possessing neuroprotective action against oxidative stress, promotes the process of cell death induced by H2O2 in rat thymocytes. Eur J Pharmacol. 2006 Jul 01; 540(1-3):18-23. Chikutei K, Oyama TM, Ishida S, Okano Y, Kobayashi M, Matsui H, Horimoto K, Nishimura Y, Ueno SY, Oyama Y. PMID: 16730701.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    41. Understanding heart development and congenital heart defects through developmental biology: a segmental approach. Congenit Anom (Kyoto). 2005 Dec; 45(4):107-18. Sakabe M, Matsui H, Sakata H, Ando K, Yamagishi T, Nakajima Y. PMID: 16359490.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    42. Induction of initial cardiomyocyte alpha-actin--smooth muscle alpha-actin--in cultured avian pregastrula epiblast: a role for nodal and BMP antagonist. Dev Dyn. 2005 Aug; 233(4):1419-29. Matsui H, Ikeda K, Nakatani K, Sakabe M, Yamagishi T, Nakanishi T, Nakajima Y. PMID: 15977172.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    43. Effect of S-adenosyl-L-methionine on the activation, proliferation and contraction of hepatic stellate cells. Eur J Pharmacol. 2005 Feb 10; 509(1):31-6. Matsui H, Kawada N. PMID: 15713426.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    44. Herb medicine Inchin-ko-to (TJ-135) regulates PDGF-BB-dependent signaling pathways of hepatic stellate cells in primary culture and attenuates development of liver fibrosis induced by thioacetamide administration in rats. J Hepatol. 2004 Aug; 41(2):242-50. Imanishi Y, Maeda N, Otogawa K, Seki S, Matsui H, Kawada N, Arakawa T. PMID: 15288473.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    45. Sulfur-containing amino acids attenuate the development of liver fibrosis in rats through down-regulation of stellate cell activation. J Hepatol. 2004 Jun; 40(6):917-25. Matsui H, Ikeda K, Nakajima Y, Horikawa S, Imanishi Y, Kawada N. PMID: 15158331.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    46. The role of self-report questionnaire in the screening of postnatal depression- a community sample survey in central Tokyo. Soc Psychiatry Psychiatr Epidemiol. 2004 Mar; 39(3):185-90. Nishizono-Maher A, Kishimoto J, Yoshida H, Urayama K, Miyato M, Otsuka Y, Matsui H. PMID: 14999450.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansPHPublic Health
    47. Amino acids, L-Cysteine and L-Methionine, Attenuate Activation of Rat Stellate Cells in Primary Culture. Comp Hepatol. 2004 Jan 14; 3 Suppl 1:S9. Matsui H, Takashima T, Maeda N, Imanishi Y, Uyama N, Okuyama H, Kawada N. PMID: 14960161.
      View in: PubMed   Mentions:
    48. Suppression of Rat Stellate Cell Activation and Liver Fibrosis by a Japanese Herbal Medicine, Inchinko-to (TJ135). Comp Hepatol. 2004 Jan 14; 3 Suppl 1:S11. Imanishi Y, Maeda N, Matsui H, Takashima T, Seki S, Arakawa T, Kawada N. PMID: 14960163.
      View in: PubMed   Mentions:
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