Vikas Bansal

Title(s)Associate Professor, Pediatrics
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    University of CaliforniaPh.D.2008Computer Science

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Robust and accurate estimation of paralog-specific copy number for duplicated genes using whole-genome sequencing. Nat Commun. 2022 06 09; 13(1):3221. Prodanov T, Bansal V. PMID: 35680869; PMCID: PMC9184528.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. Sensitive alignment using paralogous sequence variants improves long-read mapping and variant calling in segmental duplications. Nucleic Acids Res. 2020 11 04; 48(19):e114. Prodanov T, Bansal V. PMID: 33035301; PMCID: PMC7641771.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    3. Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing. Nat Commun. 2019 10 11; 10(1):4660. Edge P, Bansal V. PMID: 31604920; PMCID: PMC6788989.
      View in: PubMed   Mentions: 56     Fields:    Translation:HumansCells
    4. Sequencing Technologies and Analyses: Where Have We Been and Where Are We Going? iScience. 2019 Aug 30; 18:37-41. Bansal V, Boucher C. PMID: 31472161; PMCID: PMC6733309.
      View in: PubMed   Mentions: 12  
    5. Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes. Bioinformatics. 2019 07 15; 35(14):i242-i248. Bansal V. PMID: 31510646; PMCID: PMC6612846.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    6. Targeted genotyping of variable number tandem repeats with adVNTR. Genome Res. 2018 11; 28(11):1709-1719. Bakhtiari M, Shleizer-Burko S, Gymrek M, Bansal V, Bafna V. PMID: 30352806; PMCID: PMC6211647.
      View in: PubMed   Mentions: 22     Fields:    Translation:HumansCells
    7. Identification of a missense variant in the WFS1 gene that causes a mild form of Wolfram syndrome and is associated with risk for type 2 diabetes in Ashkenazi Jewish individuals. Diabetologia. 2018 10; 61(10):2180-2188. Bansal V, Boehm BO, Darvasi A. PMID: 30014265.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    8. An accurate algorithm for the detection of DNA fragments from dilution pool sequencing experiments. Bioinformatics. 2018 01 01; 34(1):155-162. Bansal V. PMID: 29036419; PMCID: PMC5870854.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    9. Spectrum of mutations in monogenic diabetes genes identified from high-throughput DNA sequencing of 6888 individuals. BMC Med. 2017 12 06; 15(1):213. Bansal V, Gassenhuber J, Phillips T, Oliveira G, Harbaugh R, Villarasa N, Topol EJ, Seufferlein T, Boehm BO. PMID: 29207974; PMCID: PMC5717832.
      View in: PubMed   Mentions: 38     Fields:    Translation:Humans
    10. Ultraaccurate genome sequencing and haplotyping of single human cells. Proc Natl Acad Sci U S A. 2017 11 21; 114(47):12512-12517. Chu WK, Edge P, Lee HS, Bansal V, Bafna V, Huang X, Zhang K. PMID: 29078313; PMCID: PMC5703283.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansCells
    11. Zika virus infection reprograms global transcription of host cells to allow sustained infection. Emerg Microbes Infect. 2017 Apr 26; 6(4):e24. Tiwari SK, Dang J, Qin Y, Lichinchi G, Bansal V, Rana TM. PMID: 28442752; PMCID: PMC5457678.
      View in: PubMed   Mentions: 33     Fields:    Translation:HumansAnimalsCells
    12. A computational method for estimating the PCR duplication rate in DNA and RNA-seq experiments. BMC Bioinformatics. 2017 Mar 14; 18(Suppl 3):43. Bansal V. PMID: 28361665; PMCID: PMC5374682.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    13. HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies. Genome Res. 2017 05; 27(5):801-812. Edge P, Bafna V, Bansal V. PMID: 27940952; PMCID: PMC5411775.
      View in: PubMed   Mentions: 117     Fields:    Translation:Humans
    14. InPhaDel: integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms. Nucleic Acids Res. 2016 07 08; 44(12):e111. Patel A, Edge P, Selvaraj S, Bansal V, Bafna V. PMID: 27105843; PMCID: PMC4937317.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    15. Dynamics of the human and viral m(6)A RNA methylomes during HIV-1 infection of T cells. Nat Microbiol. 2016 Feb 22; 1:16011. Lichinchi G, Gao S, Saletore Y, Gonzalez GM, Bansal V, Wang Y, Mason CE, Rana TM. PMID: 27572442; PMCID: PMC6053355.
      View in: PubMed   Mentions: 219     Fields:    Translation:HumansCells
    16. Fast individual ancestry inference from DNA sequence data leveraging allele frequencies for multiple populations. BMC Bioinformatics. 2015 Jan 16; 16:4. Bansal V, Libiger O. PMID: 25592880; PMCID: PMC4301802.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    17. Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing. Nat Biotechnol. 2013 Dec; 31(12):1111-8. Selvaraj S, R Dixon J, Bansal V, Ren B. PMID: 24185094; PMCID: PMC4180835.
      View in: PubMed   Mentions: 137     Fields:    Translation:HumansCells
    18. Evidence for the role of EPHX2 gene variants in anorexia nervosa. Mol Psychiatry. 2014 Jun; 19(6):724-32. Scott-Van Zeeland AA, Bloss CS, Tewhey R, Bansal V, Torkamani A, Libiger O, Duvvuri V, Wineinger N, Galvez L, Darst BF, Smith EN, Carson A, Pham P, Phillips T, Villarasa N, Tisch R, Zhang G, Levy S, Murray S, Chen W, Srinivasan S, Berenson G, Brandt H, Crawford S, Crow S, Fichter MM, Halmi KA, Johnson C, Kaplan AS, La Via M, Mitchell JE, Strober M, Rotondo A, Treasure J, Woodside DB, Bulik CM, Keel P, Klump KL, Lilenfeld L, Plotnicov K, Topol EJ, Shih PB, Magistretti P, Bergen AW, Berrettini W, Kaye W, Schork NJ. PMID: 23999524; PMCID: PMC3852189.
      View in: PubMed   Mentions: 42     Fields:    Translation:Humans
    19. Clinical implications of human population differences in genome-wide rates of functional genotypes. Front Genet. 2012; 3:211. Torkamani A, Pham P, Libiger O, Bansal V, Zhang G, Scott-Van Zeeland AA, Tewhey R, Topol EJ, Schork NJ. PMID: 23125845; PMCID: PMC3485509.
      View in: PubMed   Mentions: 16  
    20. Strobe sequence design for haplotype assembly. BMC Bioinformatics. 2011 Feb 15; 12 Suppl 1:S24. Lo C, Bashir A, Bansal V, Bafna V. PMID: 21342554; PMCID: PMC3044279.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    21. Population sequencing of two endocannabinoid metabolic genes identifies rare and common regulatory variants associated with extreme obesity and metabolite level. Genome Biol. 2010; 11(11):R118. Harismendy O, Bansal V, Bhatia G, Nakano M, Scott M, Wang X, Dib C, Turlotte E, Sipe JC, Murray SS, Deleuze JF, Bafna V, Topol EJ, Frazer KA. PMID: 21118518; PMCID: PMC3156957.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansCells
    22. A covering method for detecting genetic associations between rare variants and common phenotypes. PLoS Comput Biol. 2010 Oct 14; 6(10):e1000954. Bhatia G, Bansal V, Harismendy O, Schork NJ, Topol EJ, Frazer K, Bafna V. PMID: 20976246; PMCID: PMC2954823.
      View in: PubMed   Mentions: 55     Fields:    
    23. Designing deep sequencing experiments: detecting structural variation and estimating transcript abundance. BMC Genomics. 2010 Jun 18; 11:385. Bashir A, Bansal V, Bafna V. PMID: 20565853; PMCID: PMC3091630.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    24. HapCUT: an efficient and accurate algorithm for the haplotype assembly problem. Bioinformatics. 2008 Aug 15; 24(16):i153-9. Bansal V, Bafna V. PMID: 18689818.
      View in: PubMed   Mentions: 108     Fields:    Translation:Cells
    25. An MCMC algorithm for haplotype assembly from whole-genome sequence data. Genome Res. 2008 Aug; 18(8):1336-46. Bansal V, Halpern AL, Axelrod N, Bafna V. PMID: 18676820; PMCID: PMC2493424.
      View in: PubMed   Mentions: 54     Fields:    Translation:Humans
    26. Evidence for large inversion polymorphisms in the human genome from HapMap data. Genome Res. 2007 Feb; 17(2):219-30. Bansal V, Bashir A, Bafna V. PMID: 17185644; PMCID: PMC1781354.
      View in: PubMed   Mentions: 36     Fields:    Translation:Humans
    27. Inference about recombination from haplotype data: lower bounds and recombination hotspots. J Comput Biol. 2006 Mar; 13(2):501-21. Bafna V, Bansal V. PMID: 16597254.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    28. The number of recombination events in a sample history: conflict graph and lower bounds. IEEE/ACM Trans Comput Biol Bioinform. 2004 Apr-Jun; 1(2):78-90. Bafna V, Bansal V. PMID: 17048383.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
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