Vikas Bansal

TitleAssistant Professor In Residence
InstitutionUniversity of California San Diego
Address9500 Gilman Drive #0831
La Jolla CA 92093
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    University of CaliforniaPh.D.2008Computer Science

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Bansal V, Boehm BO, Darvasi A. Identification of a missense variant in the WFS1 gene that causes a mild form of Wolfram syndrome and is associated with risk for type 2 diabetes in Ashkenazi Jewish individuals. Diabetologia. 2018 Jul 16. PMID: 30014265.
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    2. Bansal V. An accurate algorithm for the detection of DNA fragments from dilution pool sequencing experiments. Bioinformatics. 2018 01 01; 34(1):155-162. PMID: 29036419.
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    3. Bansal V, Gassenhuber J, Phillips T, Oliveira G, Harbaugh R, Villarasa N, Topol EJ, Seufferlein T, Boehm BO. Spectrum of mutations in monogenic diabetes genes identified from high-throughput DNA sequencing of 6888 individuals. BMC Med. 2017 12 06; 15(1):213. PMID: 29207974.
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    4. Chu WK, Edge P, Lee HS, Bansal V, Bafna V, Huang X, Zhang K. Ultraaccurate genome sequencing and haplotyping of single human cells. Proc Natl Acad Sci U S A. 2017 Nov 21; 114(47):12512-12517. PMID: 29078313.
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    5. Tiwari SK, Dang J, Qin Y, Lichinchi G, Bansal V, Rana TM. Zika virus infection reprograms global transcription of host cells to allow sustained infection. Emerg Microbes Infect. 2017 Apr 26; 6(4):e24. PMID: 28442752.
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    6. Bansal V. A computational method for estimating the PCR duplication rate in DNA and RNA-seq experiments. BMC Bioinformatics. 2017 Mar 14; 18(Suppl 3):43. PMID: 28361665.
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    7. Edge P, Bafna V, Bansal V. HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies. Genome Res. 2017 05; 27(5):801-812. PMID: 27940952.
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    8. Bansal V, Bansal V, Libiger O. A statistical method for the detection of variants from next-generation resequencing of DNA pools. Bioinformatics. 2016 10 15; 32(20):3213. PMID: 27578802.
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    9. Patel A, Edge P, Selvaraj S, Bansal V, Bafna V. InPhaDel: integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms. Nucleic Acids Res. 2016 07 08; 44(12):e111. PMID: 27105843; PMCID: PMC4937317.
    10. Lichinchi G, Gao S, Saletore Y, Gonzalez GM, Bansal V, Wang Y, Mason CE, Rana TM. Dynamics of the human and viral m(6)A RNA methylomes during HIV-1 infection of T cells. Nat Microbiol. 2016 Feb 22; 1:16011. PMID: 27572442.
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    11. Bansal V, Libiger O. Fast individual ancestry inference from DNA sequence data leveraging allele frequencies for multiple populations. BMC Bioinformatics. 2015 Jan 16; 16:4. PMID: 25592880; PMCID: PMC4301802.
    12. Selvaraj S, R Dixon J, Bansal V, Ren B. Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing. Nat Biotechnol. 2013 Dec; 31(12):1111-8. PMID: 24185094; PMCID: PMC4180835.
    13. Scott-Van Zeeland AA, Bloss CS, Tewhey R, Bansal V, Torkamani A, Libiger O, Duvvuri V, Wineinger N, Galvez L, Darst BF, Smith EN, Carson A, Pham P, Phillips T, Villarasa N, Tisch R, Zhang G, Levy S, Murray S, Chen W, Srinivasan S, Berenson G, Brandt H, Crawford S, Crow S, Fichter MM, Halmi KA, Johnson C, Kaplan AS, La Via M, Mitchell JE, Strober M, Rotondo A, Treasure J, Woodside DB, Bulik CM, Keel P, Klump KL, Lilenfeld L, Plotnicov K, Topol EJ, Shih PB, Magistretti P, Bergen AW, Berrettini W, Kaye W, Schork NJ. Evidence for the role of EPHX2 gene variants in anorexia nervosa. Mol Psychiatry. 2014 Jun; 19(6):724-32. PMID: 23999524; PMCID: PMC3852189.
    14. Torkamani A, Pham P, Libiger O, Bansal V, Zhang G, Scott-Van Zeeland AA, Tewhey R, Topol EJ, Schork NJ. Clinical implications of human population differences in genome-wide rates of functional genotypes. Front Genet. 2012; 3:211. PMID: 23125845; PMCID: PMC3485509.
    15. Tewhey R, Cannavino CR, Leake JA, Bansal V, Topol EJ, Torkamani A, Bradley JS, Schork NJ. Genetic structure of community acquired methicillin-resistant Staphylococcus aureus USA300. BMC Genomics. 2012 Sep 25; 13:508. PMID: 23009684; PMCID: PMC3598774.
    16. Bansal V, Libiger O. A probabilistic method for the detection and genotyping of small indels from population-scale sequence data. Bioinformatics. 2011 Aug 01; 27(15):2047-53. PMID: 21653520; PMCID: PMC3137221.
    17. Bansal V, Tewhey R, Leproust EM, Schork NJ. Efficient and cost effective population resequencing by pooling and in-solution hybridization. PLoS One. 2011 Mar 30; 6(3):e18353. PMID: 21479135; PMCID: PMC3068187.
    18. Lo C, Bashir A, Bansal V, Bafna V. Strobe sequence design for haplotype assembly. BMC Bioinformatics. 2011 Feb 15; 12 Suppl 1:S24. PMID: 21342554; PMCID: PMC3044279.
    19. Tewhey R, Bansal V, Torkamani A, Topol EJ, Schork NJ. The importance of phase information for human genomics. Nat Rev Genet. 2011 03; 12(3):215-23. PMID: 21301473.
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    20. Bansal V, Tewhey R, Topol EJ, Schork NJ. The next phase in human genetics. Nat Biotechnol. 2011 Jan; 29(1):38-9. PMID: 21221098.
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    21. Bansal V, Libiger O, Torkamani A, Schork NJ. An application and empirical comparison of statistical analysis methods for associating rare variants to a complex phenotype. Pac Symp Biocomput. 2011; 76-87. PMID: 21121035; PMCID: PMC5017238.
    22. Harismendy O, Bansal V, Bhatia G, Nakano M, Scott M, Wang X, Dib C, Turlotte E, Sipe JC, Murray SS, Deleuze JF, Bafna V, Topol EJ, Frazer KA. Population sequencing of two endocannabinoid metabolic genes identifies rare and common regulatory variants associated with extreme obesity and metabolite level. Genome Biol. 2010; 11(11):R118. PMID: 21118518; PMCID: PMC3156957.
    23. Bhatia G, Bansal V, Harismendy O, Schork NJ, Topol EJ, Frazer K, Bafna V. A covering method for detecting genetic associations between rare variants and common phenotypes. PLoS Comput Biol. 2010 Oct 14; 6(10):e1000954. PMID: 20976246.
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    24. Bansal V, Libiger O, Torkamani A, Schork NJ. Statistical analysis strategies for association studies involving rare variants. Nat Rev Genet. 2010 Nov; 11(11):773-85. PMID: 20940738.
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    25. Bashir A, Bansal V, Bafna V. Designing deep sequencing experiments: detecting structural variation and estimating transcript abundance. BMC Genomics. 2010 Jun 18; 11:385. PMID: 20565853; PMCID: PMC3091630.
    26. Bansal V. A statistical method for the detection of variants from next-generation resequencing of DNA pools. Bioinformatics. 2010 Jun 15; 26(12):i318-24. PMID: 20529923; PMCID: PMC2881398.
    27. Kumar G, Kalita J, Kumar B, Bansal V, Jain SK, Misra U. Magnetic resonance angiography findings in patients with ischemic stroke from North India. J Stroke Cerebrovasc Dis. 2010 Mar; 19(2):146-52. PMID: 20189091.
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    28. Bansal V, Harismendy O, Tewhey R, Murray SS, Schork NJ, Topol EJ, Frazer KA. Accurate detection and genotyping of SNPs utilizing population sequencing data. Genome Res. 2010 Apr; 20(4):537-45. PMID: 20150320; PMCID: PMC2847757.
    29. Schork NJ, Bansal V. Not so lost in the genetic crowd. Nat Genet. 2009 Nov; 41(11):1163-4. PMID: 19862007.
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    30. Bansal V, Bafna V. HapCUT: an efficient and accurate algorithm for the haplotype assembly problem. Bioinformatics. 2008 Aug 15; 24(16):i153-9. PMID: 18689818.
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    31. Bansal V, Halpern AL, Axelrod N, Bafna V. An MCMC algorithm for haplotype assembly from whole-genome sequence data. Genome Res. 2008 Aug; 18(8):1336-46. PMID: 18676820; PMCID: PMC2493424.
    32. Gusfield D, Bansal V, Bafna V, Song YS. A decomposition theory for phylogenetic networks and incompatible characters. J Comput Biol. 2007 Dec; 14(10):1247-72. PMID: 18047426; PMCID: PMC2581772.
    33. Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, Tsiamouri A, Bafna V, Bansal V, Kravitz SA, Busam DA, Beeson KY, McIntosh TC, Remington KA, Abril JF, Gill J, Borman J, Rogers YH, Frazier ME, Scherer SW, Strausberg RL, Venter JC. The diploid genome sequence of an individual human. PLoS Biol. 2007 Sep 04; 5(10):e254. PMID: 17803354; PMCID: PMC1964779.
    34. Bansal V, Bashir A, Bafna V. Evidence for large inversion polymorphisms in the human genome from HapMap data. Genome Res. 2007 Feb; 17(2):219-30. PMID: 17185644; PMCID: PMC1781354.
    35. Bafna V, Bansal V. Inference about recombination from haplotype data: lower bounds and recombination hotspots. J Comput Biol. 2006 Mar; 13(2):501-21. PMID: 16597254.
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    36. Bafna V, Bansal V. The number of recombination events in a sample history: conflict graph and lower bounds. IEEE/ACM Trans Comput Biol Bioinform. 2004 Apr-Jun; 1(2):78-90. PMID: 17048383.
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