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Tapan Biswas

Title(s)Project Scientist, Chemistry and Biochemistry
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. F2,6BP restores mitochondrial genome integrity in Huntington's Disease. bioRxiv. 2025 Jun 30. Chakraborty A, Mandal SM, Mankevich M, Mani RS, Shahabi S, Biswas T, Kodavati M, Sreenivasmurthy SG, Tapryal N, Krishnan B, Hegde ML, Weinfeld M, Ghosh G, Hazra T. PMID: 39574700; PMCID: PMC11580889.
      View in: PubMed   Mentions:
    2. Dual-specific autophosphorylation of kinase IKK2 enables phosphorylation of substrate IκBα through a phosphoenzyme intermediate. Elife. 2025 Jun 30; 13. Borar P, Biswas T, Chaudhuri A, Rao PT, Raychaudhuri S, Huxford T, Chakrabarti S, Ghosh G, Polley S. PMID: 40586777; PMCID: PMC12208667.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    3. Cooperativity among clustered κB sites within promoters and enhancers dictates transcriptional specificity of NF-κB RelA along with specific cofactors. bioRxiv. 2025 Jun 18. Shahabi S, Biswas T, Shen Y, Sanahmadi R, Zou Y, Ghosh G. PMID: 39411157; PMCID: PMC11475870.
      View in: PubMed   Mentions:
    4. RNA control of reverse transcription in a diversity-generating retroelement. Nature. 2025 Feb; 638(8052):1122-1129. Handa S, Biswas T, Chakraborty J, Ghosh G, Paul BG, Ghosh P. PMID: 39779855; PMCID: PMC11995886.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    5. Phosphorylation-induced flexibility of proto-oncogenic Bcl3 regulates transcriptional activation by NF-κB p52 homodimer. bioRxiv. 2024 Oct 23. Pan W, Biswas T, Shahabi S, Suryajaya W, Vasquez A, Du Q, Ghosh G, Wang VY. PMID: 38979190; PMCID: PMC11230411.
      View in: PubMed   Mentions:
    6. Fructose-2,6-bisphosphate restores DNA repair activity of PNKP and ameliorates neurodegenerative symptoms in Huntington's disease. Proc Natl Acad Sci U S A. 2024 Sep 24; 121(39):e2406308121. Chakraborty A, Sreenivasmurthy SG, Miller W, Huai W, Biswas T, Mandal SM, Boscá L, Krishnan B, Ghosh G, Hazra T. PMID: 39298485; PMCID: PMC11441552.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    7. HDX-MS Analysis of Catalytic Activation of IKK2 in the IκB Kinase Complex. Biochemistry. 2024 09 17; 63(18):2323-2334. Suryajaya W, Biswas T, Shahabi S, Mealka M, Huxford T, Ghosh G. PMID: 39185716; PMCID: PMC11731525.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    8. Fructose-2,6-bisphosphate restores DNA repair activity of PNKP and ameliorates neurodegenerative symptoms in Huntington's disease. bioRxiv. 2024 Jul 16. Chakraborty A, Sreenivasmurthy SG, Miller W, Huai W, Biswas T, Mandal SM, Boscá L, Krishnan B, Ghosh G, Hazra T. PMID: 37961108; PMCID: PMC10634858.
      View in: PubMed   Mentions:
    9. Structural Requirements for Reverse Transcription by a Diversity-generating Retroelement. bioRxiv. 2024 Jun 12. Handa S, Biswas T, Chakraborty J, Ghosh G, Paul BG, Ghosh P. PMID: 37961358; PMCID: PMC10634737.
      View in: PubMed   Mentions:
    10. Transient interactions modulate the affinity of NF-κB transcription factors for DNA. Proc Natl Acad Sci U S A. 2024 Jun 04; 121(23):e2405555121. Li T, Shahabi S, Biswas T, Tsodikov OV, Pan W, Huang DB, Wang VY, Wang Y, Ghosh G. PMID: 38805268; PMCID: PMC11161749.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    11. Regulatory subunit NEMO promotes polyubiquitin-dependent induction of NF-κB through a targetable second interaction with upstream activator IKK2. J Biol Chem. 2022 05; 298(5):101864. Ko MS, Cohen SN, Polley S, Mahata SK, Biswas T, Huxford T, Ghosh G. PMID: 35339487; PMCID: PMC9035715.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    12. Discovery of a pre-mRNA structural scaffold as a contributor to the mammalian splicing code. Nucleic Acids Res. 2021 07 09; 49(12):7103-7121. Saha K, Fernandez MM, Biswas T, Joseph S, Ghosh G. PMID: 34161584; PMCID: PMC8266590.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    13. Structurally plastic NEMO and oligomerization prone IKK2 subunits define the behavior of human IKK2:NEMO complexes in solution. Biochim Biophys Acta Proteins Proteom. 2020 12; 1868(12):140526. Ko MS, Biswas T, Mulero MC, Bobkov AA, Ghosh G, Huxford T. PMID: 32853772; PMCID: PMC7994000.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    14. CD1d Selectively Down Regulates the Expression of the Oxidized Phospholipid-Specific E06 IgM Natural Antibody in Ldlr-/- Mice. Antibodies (Basel). 2020 Jul 03; 9(3). Biswas TK, VanderLaan PA, Que X, Gonen A, Krishack P, Binder CJ, Witztum JL, Getz GS, Reardon CA. PMID: 32635160; PMCID: PMC7551411.
      View in: PubMed   Mentions: 2  
    15. Structural disruption of exonic stem-loops immediately upstream of the intron regulates mammalian splicing. Nucleic Acids Res. 2020 06 19; 48(11):6294-6309. Saha K, England W, Fernandez MM, Biswas T, Spitale RC, Ghosh G. PMID: 32402057; PMCID: PMC7293017.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    16. A Guide to Production, Crystallization, and Structure Determination of Human IKK1/α. J Vis Exp. 2018 11 02; (141). Polley S, Huang DB, Biswas T, Ghosh G. PMID: 30451218.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    17. Structures of the Catalytic Domain of Bacterial Primase DnaG in Complexes with DNA Provide Insight into Key Priming Events. Biochemistry. 2018 04 10; 57(14):2084-2093. Hou C, Biswas T, Tsodikov OV. PMID: 29558114.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    18. Acetylation by Eis and Deacetylation by Rv1151c of Mycobacterium tuberculosis HupB: Biochemical and Structural Insight. Biochemistry. 2018 02 06; 57(5):781-790. Green KD, Biswas T, Pang AH, Willby MJ, Reed MS, Stuchlik O, Pohl J, Posey JE, Tsodikov OV, Garneau-Tsodikova S. PMID: 29345920; PMCID: PMC5971062.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    19. DNA-binding affinity and transcriptional activity of the RelA homodimer of nuclear factor κB are not correlated. J Biol Chem. 2017 11 17; 292(46):18821-18830. Mulero MC, Huang DB, Nguyen HT, Wang VY, Li Y, Biswas T, Ghosh G. PMID: 28935669; PMCID: PMC5704467.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    20. Erratum: Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein. Nat Microbiol. 2017 Jun 12; 2:17107. Buffalo CZ, Bahn-Suh AJ, Hirakis SP, Biswas T, Amaro RE, Nizet V, Ghosh P. PMID: 28604710.
      View in: PubMed   Mentions: 1     Fields:    
    21. Structural Basis for the Activation of IKK1/α. Cell Rep. 2016 11 15; 17(8):1907-1914. Polley S, Passos DO, Huang DB, Mulero MC, Mazumder A, Biswas T, Verma IM, Lyumkis D, Ghosh G. PMID: 27851956; PMCID: PMC5508515.
      View in: PubMed   Mentions: 35     Fields:    Translation:HumansCells
    22. To Swap or Not To Swap. Structure. 2016 09 06; 24(9):1436-8. Ghosh G, Biswas T. PMID: 27602989.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    23. Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein. Nat Microbiol. 2016 Sep 05; 1(11):16155. Buffalo CZ, Bahn-Suh AJ, Hirakis SP, Biswas T, Amaro RE, Nizet V, Ghosh P. PMID: 27595425; PMCID: PMC5014329.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansCells
    24. Structural and computational dissection of the catalytic mechanism of the inorganic pyrophosphatase from Mycobacterium tuberculosis. J Struct Biol. 2015 Oct; 192(1):76-87. Pratt AC, Dewage SW, Pang AH, Biswas T, Barnard-Britson S, Cisneros GA, Tsodikov OV. PMID: 26296329.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    25. Biochemical and structural analysis of an Eis family aminoglycoside acetyltransferase from bacillus anthracis. Biochemistry. 2015 May 26; 54(20):3197-206. Green KD, Biswas T, Chang C, Wu R, Chen W, Janes BK, Chalupska D, Gornicki P, Hanna PC, Tsodikov OV, Joachimiak A, Garneau-Tsodikova S. PMID: 25928210; PMCID: PMC4671295.
      View in: PubMed   Mentions: 21     Fields:    Translation:Cells
    26. Discovery of inhibitors of Bacillus anthracis primase DnaG. Biochemistry. 2013 Oct 01; 52(39):6905-10. Biswas T, Green KD, Garneau-Tsodikova S, Tsodikov OV. PMID: 24004110.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    27. DksA2, a zinc-independent structural analog of the transcription factor DksA. FEBS Lett. 2013 Mar 18; 587(6):614-9. Furman R, Biswas T, Danhart EM, Foster MP, Tsodikov OV, Artsimovitch I. PMID: 23416301; PMCID: PMC5525025.
      View in: PubMed   Mentions: 24     Fields:    Translation:Cells
    28. A novel non-radioactive primase-pyrophosphatase activity assay and its application to the discovery of inhibitors of Mycobacterium tuberculosis primase DnaG. Nucleic Acids Res. 2013 Feb 01; 41(4):e56. Biswas T, Resto-Roldán E, Sawyer SK, Artsimovitch I, Tsodikov OV. PMID: 23267008; PMCID: PMC3575809.
      View in: PubMed   Mentions: 18     Fields:    Translation:Cells
    29. Unusual regioversatility of acetyltransferase Eis, a cause of drug resistance in XDR-TB. Proc Natl Acad Sci U S A. 2011 Jun 14; 108(24):9804-8. Chen W, Biswas T, Porter VR, Tsodikov OV, Garneau-Tsodikova S. PMID: 21628583; PMCID: PMC3116390.
      View in: PubMed   Mentions: 84     Fields:    Translation:HumansCells
    30. Structural and thermodynamic signatures of DNA recognition by Mycobacterium tuberculosis DnaA. J Mol Biol. 2011 Jul 15; 410(3):461-76. Tsodikov OV, Biswas T. PMID: 21620858.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    31. Structural insight into serine protease Rv3671c that Protects M. tuberculosis from oxidative and acidic stress. Structure. 2010 Oct 13; 18(10):1353-63. Biswas T, Small J, Vandal O, Odaira T, Deng H, Ehrt S, Tsodikov OV. PMID: 20947023; PMCID: PMC2955984.
      View in: PubMed   Mentions: 24     Fields:    Translation:Cells
    32. A new scaffold of an old protein fold ensures binding to the bisintercalator thiocoraline. J Mol Biol. 2010 Mar 26; 397(2):495-507. Biswas T, Zolova OE, Lombó F, de la Calle F, Salas JA, Tsodikov OV, Garneau-Tsodikova S. PMID: 20122935.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    33. DNA-dependent ATPase activity of bacterial XPB helicases. Biochemistry. 2009 Mar 31; 48(12):2839-48. Biswas T, Pero JM, Joseph CG, Tsodikov OV. PMID: 19199647.
      View in: PubMed   Mentions: 15     Fields:    Translation:Cells
    34. Architecture of the 99 bp DNA-six-protein regulatory complex of the lambda att site. Mol Cell. 2006 Nov 17; 24(4):569-80. Sun X, Mierke DF, Biswas T, Lee SY, Landy A, Radman-Livaja M. PMID: 17114059; PMCID: PMC1866956.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    35. A structural basis for allosteric control of DNA recombination by lambda integrase. Nature. 2005 Jun 23; 435(7045):1059-66. Biswas T, Aihara H, Radman-Livaja M, Filman D, Landy A, Ellenberger T. PMID: 15973401; PMCID: PMC1809751.
      View in: PubMed   Mentions: 93     Fields:    Translation:Cells
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