Robert Sinkovits

Title(s)	CMPTL AND DATA SCI RSCH SPEC 5, CACSE
School	Vc-academic Affairs
Address	9500 Gilman Drive # La Jolla CA 92093
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Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Use of accounting concepts to study research: return on investment in XSEDE, a US cyberinfrastructure service. Scientometrics. 2023; 128(6):3225-3255. Stewart CA, Costa CM, Wernert JA, Snapp-Childs W, Bland M, Blood P, Campbell T, Couvares P, Fischer J, Hancock DY, Hart DL, Jankowski H, Knepper R, McMullen DF, Mehringer S, Pierce M, Rogers G, Sinkovits RS, Towns J. PMID: 36818051; PMCID: PMC9927055.

View in: PubMed Mentions:
PyIR: a scalable wrapper for processing billions of immunoglobulin and T cell receptor sequences using IgBLAST. BMC Bioinformatics. 2020 Jul 16; 21(1):314. Soto C, Finn JA, Willis JR, Day SB, Sinkovits RS, Jones T, Schmitz S, Meiler J, Branchizio A, Crowe JE. PMID: 32677886; PMCID: PMC7364545.

View in: PubMed Mentions: 14 Fields:
Com Computational Biology
Translation:Humans Cells
High Frequency of Shared Clonotypes in Human T Cell Receptor Repertoires. Cell Rep. 2020 07 14; 32(2):107882. Soto C, Bombardi RG, Kozhevnikov M, Sinkovits RS, Chen EC, Branchizio A, Kose N, Day SB, Pilkinton M, Gujral M, Mallal S, Crowe JE. PMID: 32668251; PMCID: PMC7433715.

View in: PubMed Mentions: 29 Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Humans Cells
High frequency of shared clonotypes in human B cell receptor repertoires. Nature. 2019 02; 566(7744):398-402. Soto C, Bombardi RG, Branchizio A, Kose N, Matta P, Sevy AM, Sinkovits RS, Gilchuk P, Finn JA, Crowe JE. PMID: 30760926; PMCID: PMC6949180.

View in: PubMed Mentions: 152 Fields:
Sci Science
Translation:Humans Cells
A bioinformatics roadmap for the human vaccines project. Expert Rev Vaccines. 2017 06; 16(6):535-544. Scheuermann RH, Sinkovits RS, Schenkelberg T, Koff WC. PMID: 28434256.

View in: PubMed Mentions: 2 Fields:
All Allergy and Immunology
Translation:Humans
Fast determination of structurally cohesive subgroups in large networks. J Comput Sci. 2016 Nov; 17(Pt 1):62-72. Sinkovits RS, Moody J, Oztan BT, White DR. PMID: 28503215; PMCID: PMC5423759.

View in: PubMed Mentions:
A Real-Time 3D Reconstruction System for Screening Icosahedral Particles Under Different Conditions at the Microscope. Microsc Microanal. 2013 Aug; 19(Suppl 2):764-765. Cardone G, Yan X, Sinkovits RS, Baker TS. PMID: 25242888; PMCID: PMC4166516.

View in: PubMed Mentions: Fields:
Che Chemistry Techniques
Three-dimensional reconstruction of icosahedral particles from single micrographs in real time at the microscope. J Struct Biol. 2013 Sep; 183(3):329-341. Cardone G, Yan X, Sinkovits RS, Tang J, Baker TS. PMID: 23891839; PMCID: PMC3831522.

View in: PubMed Mentions: 2 Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Cells
Capsid antibodies to different adeno-associated virus serotypes bind common regions. J Virol. 2013 Aug; 87(16):9111-24. Gurda BL, DiMattia MA, Miller EB, Bennett A, McKenna R, Weichert WS, Nelson CD, Chen WJ, Muzyczka N, Olson NH, Sinkovits RS, Chiorini JA, Zolotutkhin S, Kozyreva OG, Samulski RJ, Baker TS, Parrish CR, Agbandje-McKenna M. PMID: 23760240; PMCID: PMC3754064.

View in: PubMed Mentions: 82 Fields:
Vir Virology
Translation:Humans Cells
Network cosmology. Sci Rep. 2012; 2:793. Krioukov D, Kitsak M, Sinkovits RS, Rideout D, Meyer D, Boguñá M. PMID: 23162688; PMCID: PMC3499772.

View in: PubMed Mentions: 23 Fields:
Sci Science
Structural analysis of coxsackievirus A7 reveals conformational changes associated with uncoating. J Virol. 2012 Jul; 86(13):7207-15. Seitsonen JJ, Shakeel S, Susi P, Pandurangan AP, Sinkovits RS, Hyvönen H, Laurinmäki P, Ylä-Pelto J, Topf M, Hyypiä T, Butcher SJ. PMID: 22514349; PMCID: PMC3416324.

View in: PubMed Mentions: 30 Fields:
Vir Virology
Translation:Humans Cells
Structural insight into the unique properties of adeno-associated virus serotype 9. J Virol. 2012 Jun; 86(12):6947-58. DiMattia MA, Nam HJ, Van Vliet K, Mitchell M, Bennett A, Gurda BL, McKenna R, Olson NH, Sinkovits RS, Potter M, Byrne BJ, Aslanidi G, Zolotukhin S, Muzyczka N, Baker TS, Agbandje-McKenna M. PMID: 22496238; PMCID: PMC3393551.

View in: PubMed Mentions: 117 Fields:
Vir Virology
Translation:Cells
Controlling and switching the morphology of micellar nanoparticles with enzymes. J Am Chem Soc. 2011 Jun 08; 133(22):8392-5. Ku TH, Chien MP, Thompson MP, Sinkovits RS, Olson NH, Baker TS, Gianneschi NC. PMID: 21462979; PMCID: PMC3756928.

View in: PubMed Mentions: 37 Fields:
Che Chemistry
Translation:Cells
Cryo-reconstructions of P22 polyheads suggest that phage assembly is nucleated by trimeric interactions among coat proteins. Phys Biol. 2010 Dec 09; 7(4):045004. Parent KN, Sinkovits RS, Suhanovsky MM, Teschke CM, Egelman EH, Baker TS. PMID: 21149969; PMCID: PMC3202341.

View in: PubMed Mentions: 16 Fields:
Bio Biology Bio Biophysics
Translation:Cells
Interaction of alphaVbeta3 and alphaVbeta6 integrins with human parechovirus 1. J Virol. 2010 Sep; 84(17):8509-19. Seitsonen J, Susi P, Heikkilä O, Sinkovits RS, Laurinmäki P, Hyypiä T, Butcher SJ. PMID: 20554778; PMCID: PMC2919010.

View in: PubMed Mentions: 30 Fields:
Vir Virology
Translation:Humans Cells
Human bocavirus capsid structure: insights into the structural repertoire of the parvoviridae. J Virol. 2010 Jun; 84(12):5880-9. Gurda BL, Parent KN, Bladek H, Sinkovits RS, DiMattia MA, Rence C, Castro A, McKenna R, Olson N, Brown K, Baker TS, Agbandje-McKenna M. PMID: 20375175; PMCID: PMC2876641.

View in: PubMed Mentions: 34 Fields:
Vir Virology
Translation:Humans Cells
Three-dimensional asymmetric reconstruction of tailed bacteriophage. Methods Enzymol. 2010; 482:185-210. Tang J, Sinkovits RS, Baker TS. PMID: 20888962; PMCID: PMC3779122.

View in: PubMed Mentions: 4 Fields:
Bio Biochemistry
Translation:Cells
A tale of two symmetrons: rules for construction of icosahedral capsids from trisymmetrons and pentasymmetrons. J Struct Biol. 2010 Apr; 170(1):109-16. Sinkovits RS, Baker TS. PMID: 19963064; PMCID: PMC3834589.

View in: PubMed Mentions: 5 Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Cells
Atomic structure reveals the unique capsid organization of a dsRNA virus. Proc Natl Acad Sci U S A. 2009 Mar 17; 106(11):4225-30. Pan J, Dong L, Lin L, Ochoa WF, Sinkovits RS, Havens WM, Nibert ML, Baker TS, Ghabrial SA, Tao YJ. PMID: 19246376; PMCID: PMC2657383.

View in: PubMed Mentions: 41 Fields:
Sci Science
Translation:Cells
Infectious myonecrosis virus has a totivirus-like, 120-subunit capsid, but with fiber complexes at the fivefold axes. Proc Natl Acad Sci U S A. 2008 Nov 11; 105(45):17526-31. Tang J, Ochoa WF, Sinkovits RS, Poulos BT, Ghabrial SA, Lightner DV, Baker TS, Nibert ML. PMID: 18981418; PMCID: PMC2582295.

View in: PubMed Mentions: 23 Fields:
Sci Science
Translation:Animals Cells
Partitivirus structure reveals a 120-subunit, helix-rich capsid with distinctive surface arches formed by quasisymmetric coat-protein dimers. Structure. 2008 May; 16(5):776-86. Ochoa WF, Havens WM, Sinkovits RS, Nibert ML, Ghabrial SA, Baker TS. PMID: 18462682; PMCID: PMC2556151.

View in: PubMed Mentions: 28 Fields:
Bio Biochemistry Bio Biotechnology Mol Molecular Biology
Translation:Animals Cells
AUTO3DEM--an automated and high throughput program for image reconstruction of icosahedral particles. J Struct Biol. 2007 Jan; 157(1):73-82. Yan X, Sinkovits RS, Baker TS. PMID: 17029842; PMCID: PMC1847775.

View in: PubMed Mentions: 138 Fields:
Cel Cell Biology Mol Molecular Biology
Translation:Cells
Components of the antigen processing and presentation pathway revealed by gene expression microarray analysis following B cell antigen receptor (BCR) stimulation. BMC Bioinformatics. 2006 May 02; 7:237. Lee JA, Sinkovits RS, Mock D, Rab EL, Cai J, Yang P, Saunders B, Hsueh RC, Choi S, Subramaniam S, Scheuermann RH, Alliance for Cellular Signaling. PMID: 16670020; PMCID: PMC1479375.

View in: PubMed Mentions: 21 Fields:
Com Computational Biology
Translation:Humans Cells
Overview of the Alliance for Cellular Signaling. Nature. 2002 Dec 12; 420(6916):703-6. Gilman AG, Simon MI, Bourne HR, Harris BA, Long R, Ross EM, Stull JT, Taussig R, Bourne HR, Arkin AP, Cobb MH, Cyster JG, Devreotes PN, Ferrell JE, Fruman D, Gold M, Weiss A, Stull JT, Berridge MJ, Cantley LC, Catterall WA, Coughlin SR, Olson EN, Smith TF, Brugge JS, Botstein D, Dixon JE, Hunter T, Lefkowitz RJ, Pawson AJ, Sternberg PW, Varmus H, Subramaniam S, Sinkovits RS, Li J, Mock D, Ning Y, Saunders B, Sternweis PC, Hilgemann D, Scheuermann RH, DeCamp D, Hsueh R, Lin KM, Ni Y, Seaman WE, Simpson PC, O'Connell TD, Roach T, Simon MI, Choi S, Eversole-Cire P, Fraser I, Mumby MC, Zhao Y, Brekken D, Shu H, Meyer T, Chandy G, Heo WD, Liou J, O'Rourke N, Verghese M, Mumby SM, Han H, Brown HA, Forrester JS, Ivanova P, Milne SB, Casey PJ, Harden TK, Arkin AP, Doyle J, Gray ML, Meyer T, Michnick S, Schmidt MA, Toner M, Tsien RY, Natarajan M, Ranganathan R, Sambrano GR, Participating investigators and scientists of the Alliance for Cellular Signaling. PMID: 12478301.

View in: PubMed Mentions: 35 Fields:
Sci Science
Translation:Humans Cells