Edward Catoiu

Title(s)CMPTL AND DATA SCI RSCH SPEC 3, Bioengineering
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Establishing comprehensive quaternary structural proteomes from genome sequence. Res Sq. 2023 May 19. Catoiu EA, Mih N, Lu M, Palsson B. PMID: 37292890; PMCID: PMC10246253.
      View in: PubMed   Mentions:
    2. Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks. Proc Natl Acad Sci U S A. 2023 04 11; 120(15):e2218835120. Catoiu EA, Phaneuf P, Monk J, Palsson BO. PMID: 37011218; PMCID: PMC10104531.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    3. Adaptations of Escherichia coli strains to oxidative stress are reflected in properties of their structural proteomes. BMC Bioinformatics. 2020 Apr 29; 21(1):162. Mih N, Monk JM, Fang X, Catoiu E, Heckmann D, Yang L, Palsson BO. PMID: 32349661; PMCID: PMC7191737.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    4. OxyR Is a Convergent Target for Mutations Acquired during Adaptation to Oxidative Stress-Prone Metabolic States. Mol Biol Evol. 2020 03 01; 37(3):660-667. Anand A, Chen K, Catoiu E, Sastry AV, Olson CA, Sandberg TE, Seif Y, Xu S, Szubin R, Yang L, Feist AM, Palsson BO. PMID: 31651953; PMCID: PMC7038661.
      View in: PubMed   Mentions: 18     Fields:    Translation:Cells
    5. Pseudogene repair driven by selection pressure applied in experimental evolution. Nat Microbiol. 2019 03; 4(3):386-389. Anand A, Olson CA, Yang L, Sastry AV, Catoiu E, Choudhary KS, Phaneuf PV, Sandberg TE, Xu S, Hefner Y, Szubin R, Feist AM, Palsson BO. PMID: 30692668.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    6. Reframing gene essentiality in terms of adaptive flexibility. BMC Syst Biol. 2018 12 17; 12(1):143. Guzmán GI, Olson CA, Hefner Y, Phaneuf PV, Catoiu E, Crepaldi LB, Micas LG, Palsson BO, Feist AM. PMID: 30558585; PMCID: PMC6296033.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    7. Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance. Nat Commun. 2018 10 17; 9(1):4306. Kavvas ES, Catoiu E, Mih N, Yurkovich JT, Seif Y, Dillon N, Heckmann D, Anand A, Yang L, Nizet V, Monk JM, Palsson BO. PMID: 30333483; PMCID: PMC6193043.
      View in: PubMed   Mentions: 69     Fields:    Translation:Cells
    8. Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits. Nat Commun. 2018 09 14; 9(1):3771. Seif Y, Kavvas E, Lachance JC, Yurkovich JT, Nuccio SP, Fang X, Catoiu E, Raffatellu M, Palsson BO, Monk JM. PMID: 30218022; PMCID: PMC6138749.
      View in: PubMed   Mentions: 53     Fields:    Translation:Cells
    9. COBRAme: A computational framework for genome-scale models of metabolism and gene expression. PLoS Comput Biol. 2018 07; 14(7):e1006302. Lloyd CJ, Ebrahim A, Yang L, King ZA, Catoiu E, O'Brien EJ, Liu JK, Palsson BO. PMID: 29975681; PMCID: PMC6049947.
      View in: PubMed   Mentions: 48     Fields:    
    10. ssbio: a Python framework for structural systems biology. Bioinformatics. 2018 06 15; 34(12):2155-2157. Mih N, Brunk E, Chen K, Catoiu E, Sastry A, Kavvas E, Monk JM, Zhang Z, Palsson BO. PMID: 29444205; PMCID: PMC6658713.
      View in: PubMed   Mentions: 19     Fields:    Translation:Cells
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