Elizabeth Brunk
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School | Vc-health Sciences-schools |
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Address | 9500 Gilman Drive # La Jolla CA 92093
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vCard | Download vCard |
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Bibliographic
Altmetrics Details
PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media.
(Note that publications are often cited in additional ways that are not shown here.)
Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication.
Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication.
Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.)
Click a Field or Translation tag to filter the publications.
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NAD metabolic dependency in cancer is shaped by gene amplification and enhancer remodelling. Nature. 2019 05; 569(7757):570-575.
Chowdhry S, Zanca C, Rajkumar U, Koga T, Diao Y, Raviram R, Liu F, Turner K, Yang H, Brunk E, Bi J, Furnari F, Bafna V, Ren B, Mischel PS. PMID: 31019297.
View in: PubMed Mentions: 23 Fields: Translation: HumansAnimalsCells
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Characterizing posttranslational modifications in prokaryotic metabolism using a multiscale workflow. Proc Natl Acad Sci U S A. 2018 10 23; 115(43):11096-11101.
Brunk E, Chang RL, Xia J, Hefzi H, Yurkovich JT, Kim D, Buckmiller E, Wang HH, Cho BK, Yang C, Palsson BO, Church GM, Lewis NE. PMID: 30301795.
View in: PubMed Mentions: 4 Fields: Translation: Cells
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Evolution of gene knockout strains of E. coli reveal regulatory architectures governed by metabolism. Nat Commun. 2018 09 18; 9(1):3796.
McCloskey D, Xu S, Sandberg TE, Brunk E, Hefner Y, Szubin R, Feist AM, Palsson BO. PMID: 30228271.
View in: PubMed Mentions: 10 Fields: Translation: Cells
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Multiple Optimal Phenotypes Overcome Redox and Glycolytic Intermediate Metabolite Imbalances in Escherichia coli pgi Knockout Evolutions. Appl Environ Microbiol. 2018 10 01; 84(19).
McCloskey D, Xu S, Sandberg TE, Brunk E, Hefner Y, Szubin R, Feist AM, Palsson BO. PMID: 30054360.
View in: PubMed Mentions: 5 Fields: Translation: Cells
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Growth Adaptation of gnd and sdhCB Escherichia coli Deletion Strains Diverges From a Similar Initial Perturbation of the Transcriptome. Front Microbiol. 2018; 9:1793.
McCloskey D, Xu S, Sandberg TE, Brunk E, Hefner Y, Szubin R, Feist AM, Palsson BO. PMID: 30131786.
View in: PubMed Mentions:
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ssbio: a Python framework for structural systems biology. Bioinformatics. 2018 06 15; 34(12):2155-2157.
Mih N, Brunk E, Chen K, Catoiu E, Sastry A, Kavvas E, Monk JM, Zhang Z, Palsson BO. PMID: 29444205.
View in: PubMed Mentions: 9 Fields: Translation: Cells
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Adaptive laboratory evolution resolves energy depletion to maintain high aromatic metabolite phenotypes in Escherichia coli strains lacking the Phosphotransferase System. . 2018 07; 48:233-242.
McCloskey D, Xu S, Sandberg TE, Brunk E, Hefner Y, Szubin R, Feist AM, Palsson BO. PMID: 29906504.
View in: PubMed Mentions:
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Adaptation to the coupling of glycolysis to toxic methylglyoxal production in tpiA deletion strains of Escherichia coli requires synchronized and counterintuitive genetic changes. . 2018 07; 48:82-93.
McCloskey D, Xu S, Sandberg TE, Brunk E, Hefner Y, Szubin R, Feist AM, Palsson BO. PMID: 29842925.
View in: PubMed Mentions:
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Recon3D enables a three-dimensional view of gene variation in human metabolism. Nat Biotechnol. 2018 03; 36(3):272-281.
Brunk E, Sahoo S, Zielinski DC, Altunkaya A, Dräger A, Mih N, Gatto F, Nilsson A, Preciat Gonzalez GA, Aurich MK, Prlic A, Sastry A, Danielsdottir AD, Heinken A, Noronha A, Rose PW, Burley SK, Fleming RMT, Nielsen J, Thiele I, Palsson BO. PMID: 29457794.
View in: PubMed Mentions: 58 Fields: Translation: Humans
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Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework. Genome Med. 2017 Dec 18; 9(1):113.
PMID: 29254494.
View in: PubMed Mentions: 11 Fields: Translation: HumansCells
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iML1515, a knowledgebase that computes Escherichia coli traits. Nat Biotechnol. 2017 10 11; 35(10):904-908.
Monk JM, Lloyd CJ, Brunk E, Mih N, Sastry A, King Z, Takeuchi R, Nomura W, Zhang Z, Mori H, Feist AM, Palsson BO. PMID: 29020004.
View in: PubMed Mentions: 55 Fields: Translation: Cells
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Machine learning in computational biology to accelerate high-throughput protein expression. Bioinformatics. 2017 Aug 15; 33(16):2487-2495.
Sastry A, Monk J, Tegel H, Uhlen M, Palsson BO, Rockberg J, Brunk E. PMID: 28398465.
View in: PubMed Mentions: Fields: Translation: HumansCells
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The Need for Integrated Approaches in Metabolic Engineering. Cold Spring Harb Perspect Biol. 2016 Nov 01; 8(11).
PMID: 27527588.
View in: PubMed Mentions: 9 Fields: Translation: Cells
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Multi-omic data integration enables discovery of hidden biological regularities. Nat Commun. 2016 10 26; 7:13091.
PMID: 27782110.
View in: PubMed Mentions: 31 Fields: Translation: Cells
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Genetic-Algorithm-Based Optimization of a Peptidic Scaffold for Sequestration and Hydration of CO2. Chemphyschem. 2016 Dec 05; 17(23):3831-3835.
PMID: 27706880.
View in: PubMed Mentions: Fields: Translation: Cells
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A Multi-scale Computational Platform to Mechanistically Assess the Effect of Genetic Variation on Drug Responses in Human Erythrocyte Metabolism. PLoS Comput Biol. 2016 07; 12(7):e1005039.
PMID: 27467583.
View in: PubMed Mentions: 2 Fields: Translation: HumansCells
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Characterizing Strain Variation in Engineered E. coli Using a Multi-Omics-Based Workflow. Cell Syst. 2016 05 25; 2(5):335-46.
PMID: 27211860.
View in: PubMed Mentions: 19 Fields: Translation: Cells
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Systems biology of the structural proteome. BMC Syst Biol. 2016 Mar 11; 10:26.
PMID: 26969117.
View in: PubMed Mentions: 17 Fields: Translation: Cells
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Model-driven discovery of synergistic inhibitors against E. coli and S. enterica serovar Typhimurium targeting a novel synthetic lethal pair, aldA and prpC. Front Microbiol. 2015; 6:958.
PMID: 26441892.
View in: PubMed Mentions:
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A streamlined ribosome profiling protocol for the characterization of microorganisms. Biotechniques. 2015 Jun; 58(6):329-32.
PMID: 26054770.
View in: PubMed Mentions: 17 Fields: Translation: Cells
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Mixed Quantum Mechanical/Molecular Mechanical Molecular Dynamics Simulations of Biological Systems in Ground and Electronically Excited States. Chem Rev. 2015 Jun 24; 115(12):6217-63.
PMID: 25880693.
View in: PubMed Mentions: 37 Fields: Translation: Cells
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Free-energy landscape and characteristic forces for the initiation of DNA unzipping. Biophys J. 2015 Apr 07; 108(7):1727-1738.
PMID: 25863064.
View in: PubMed Mentions: 1 Fields: Translation: Cells
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Model-driven discovery of underground metabolic functions in Escherichia coli. Proc Natl Acad Sci U S A. 2015 Jan 20; 112(3):929-34.
PMID: 25564669.
View in: PubMed Mentions: 17 Fields: Translation: Cells
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Lessons from nature: computational design of biomimetic compounds and processes. Chimia (Aarau). 2014 Sep; 68(9):642-7.
PMID: 25437785.
View in: PubMed Mentions: 1 Fields: Translation: HumansCells
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A mechanochemical switch to control radical intermediates. Biochemistry. 2014 Jun 17; 53(23):3830-8.
PMID: 24846280.
View in: PubMed Mentions: Fields: Translation: Cells
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Mechanism to trigger unfolding in O(6) -alkylguanine-DNA alkyltransferase. Chembiochem. 2013 Apr 15; 14(6):703-10.
PMID: 23532906.
View in: PubMed Mentions: 3 Fields: Translation: HumansCells
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Computational, structural, and kinetic evidence that Vibrio vulnificus FrsA is not a cofactor-independent pyruvate decarboxylase. Biochemistry. 2013 Mar 19; 52(11):1842-4.
PMID: 23452154.
View in: PubMed Mentions: 2 Fields: Translation: Cells
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Role of environment for catalysis of the DNA repair enzyme MutY. J Am Chem Soc. 2012 May 23; 134(20):8608-16.
PMID: 22537339.
View in: PubMed Mentions: 4 Fields: Translation: Cells
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Directed evolution of the suicide protein O6-alkylguanine-DNA alkyltransferase for increased reactivity results in an alkylated protein with exceptional stability. Biochemistry. 2012 Feb 07; 51(5):986-94.
PMID: 22280500.
View in: PubMed Mentions: 16 Fields: Translation: HumansCells
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Integrating computational methods to retrofit enzymes to synthetic pathways. Biotechnol Bioeng. 2012 Feb; 109(2):572-82.
PMID: 21928337.
View in: PubMed Mentions: 7 Fields: Translation: Cells
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Pushing the frontiers of first-principles based computer simulations of chemical and biological systems. Chimia (Aarau). 2011; 65(9):667-71.
PMID: 22026176.
View in: PubMed Mentions: 2 Fields: Translation: Cells
This graph shows the total number of publications by year. To see the data as text, click here.
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Year | Publications |
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2011 | 2 | 2012 | 2 | 2013 | 2 | 2014 | 2 | 2015 | 5 | 2016 | 6 | 2017 | 3 | 2018 | 8 | 2019 | 1 |
This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
To see the data as text, click here.
This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
To see the data as text, click here.
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