Andrew Bartko

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Title(s)	Adjunct Professor, Bioengineering
School	Vc-academic Affairs
Address	9500 Gilman Drive # La Jolla CA 92093
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Bibliographic

selected publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

Altmetrics Details

PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Versatile wastewater monitoring of pathogens and antimicrobial resistance enabled by metatranscriptomics and long-read metagenomics. Res Sq. 2025 Sep 10. Knight R, Din MO, Salido R, Wright G, Brennan C, Ambre M, Hansen L, Boyer T, Cao J, Oles R, Patel L, Weng Y, McDonald D, Bhute S, Solini G, Karthikeyan S, Humphrey G, DeHoff P, Kralicek S, Levy J, Zeller M, Hecht G, Laurent L, Yeo G, Andersen K, Bartko A. PMID: 40964040; PMCID: PMC12440100.

View in: PubMed Mentions:
Chronological age estimation from human microbiomes with transformer-based Robust Principal Component Analysis. Commun Biol. 2025 Aug 06; 8(1):1159. Myers T, Song SJ, Chen Y, De Pessemier B, Khatib L, McDonald D, Huang S, Gallo R, Callewaert C, Havulinna AS, Lahti L, Roeselers G, Laiola M, Shetty SA, Kelley ST, Knight R, Bartko A. PMID: 40770074; PMCID: PMC12328700.

View in: PubMed Mentions: Translation:Humans
A three-country analysis of the gut microbiome indicates taxon associations with diet vary by taxon resolution and population. mSystems. 2025 Jul 22; 10(7):e0054425. Khatib L, Song SJ, Dilmore AH, Sanders JG, Brennan C, Hernandez AR, Myers T, Oles R, Farmer S, Cowart C, Birmingham A, Diaz EA, Nizet O, Gilbert K, Litwin N, Das P, Nowinski B, Bryant M, Tribelhorn C, Sanders-Bodai K, Chaumont S, Knol J, Roeselers G, Laiola M, Shetty SA, Veiga P, Tap J, Derrien M, Koutnikova H, Cotillard A, Lay C, Tovar AR, Torres N, Arteaga L, González A, McDonald D, Bartko A, Knight R. PMID: 40586597; PMCID: PMC12282181.

View in: PubMed Mentions: Fields:
Mic Microbiology
Translation:Humans Cells
ChIP provides 10-fold microbial DNA enrichment from tissue while minimizing bias. Mol Biol Rep. 2025 Feb 21; 52(1):258. Bhute S, Sanders JG, Song SJ, Lavoie S, Swafford A, Guccione C, Patel L, Gonzalez A, Rooks MG, Knight R, Bartko A. PMID: 39982577; PMCID: PMC11845529.

View in: PubMed Mentions: Fields:
Mol Molecular Biology
Translation:Humans Animals
Author Correction: Greengenes2 unifies microbial data in a single reference tree. Nat Biotechnol. 2024 May; 42(5):813. McDonald D, Jiang Y, Balaban M, Cantrell K, Zhu Q, Gonzalez A, Morton JT, Nicolaou G, Parks DH, Karst SM, Albertsen M, Hugenholtz P, DeSantis T, Song SJ, Bartko A, Havulinna AS, Jousilahti P, Cheng S, Inouye M, Niiranen T, Jain M, Salomaa V, Lahti L, Mirarab S, Knight R. PMID: 37853258; PMCID: PMC11098728.

View in: PubMed Mentions: 7 Fields:
Bio Biotechnology
Greengenes2 unifies microbial data in a single reference tree. Nat Biotechnol. 2024 May; 42(5):715-718. McDonald D, Jiang Y, Balaban M, Cantrell K, Zhu Q, Gonzalez A, Morton JT, Nicolaou G, Parks DH, Karst SM, Albertsen M, Hugenholtz P, DeSantis T, Song SJ, Bartko A, Havulinna AS, Jousilahti P, Cheng S, Inouye M, Niiranen T, Jain M, Salomaa V, Lahti L, Mirarab S, Knight R. PMID: 37500913; PMCID: PMC10818020.

View in: PubMed Mentions: 173 Fields:
Bio Biotechnology
Translation:Cells
Perspective on Improving Environmental Monitoring of Biothreats. Front Bioeng Biotechnol. 2018; 6:147. Dunbar J, Pillai S, Wunschel D, Dickens M, Morse SA, Franz D, Bartko A, Challacombe J, Persons T, Hughes MA, Blanke SR, Holland R, Hutchison J, Merkley ED, Campbell K, Branda CS, Sharma S, Lindler L, Anderson K, Hodge D. PMID: 30406093; PMCID: PMC6207620.

View in: PubMed Mentions: 2
An amphiphilic approach to nanocrystal quantum dot-titania nanocomposites. J Am Chem Soc. 2004 Jan 28; 126(3):714-5. Petruska MA, Bartko AP, Klimov VI. PMID: 14733535.

View in: PubMed Mentions: 3 Fields:
Che Chemistry
Size-correlated spectroscopy and imaging of rare-earth-doped nanocrystals. Appl Opt. 2003 Apr 20; 42(12):2132-9. Mehta A, Thundat T, Barnes MD, Chhabra V, Bhargava R, Bartko AP, Dickson RM. PMID: 12716155.

View in: PubMed Mentions: 1 Fields:
Oph Ophthalmology
Three-dimensional single molecule rotational diffusion in glassy state polymer films. Phys Rev Lett. 2002 Jul 08; 89(2):026101. Bartko AP, Xu K, Dickson RM. PMID: 12097008.

View in: PubMed Mentions: 10 Fields:
Med Medicine (General)
Photoactivated fluorescence from individual silver nanoclusters. Science. 2001 Jan 05; 291(5501):103-6. Peyser LA, Vinson AE, Bartko AP, Dickson RM. PMID: 11141556.

View in: PubMed Mentions: 61 Fields:
Sci Science
[Use of liquid chromatography for the determination of formaldehyde in biological materials]. Vet Med (Praha). 1984 Aug; 29(8):503-9. Bartko A, Pár O, Prikryl J. PMID: 6438866.

View in: PubMed Mentions: Fields:
Vet Veterinary Medicine