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Terbium (III) and adenosine monophosphate coordinated hydrogel for fluoroquinolones sensing by combining machine learning. Food Chem. 2025 Dec 01; 494:146115.
Peng T, Liang Z, Zhao J, Si J, Xie J, Dai X, Wu L. PMID: 40907184.
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An increase of NPY1 expression leads to inhibitory phosphorylation of PIN-FORMED (PIN) proteins and suppression of pinoid (pid) null mutants. bioRxiv. 2025 Jul 14.
Mudgett M, Shen Z, Kang R, Dai X, Briggs S, Zhao Y. PMID: 40791347; PMCID: PMC12338621.
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iDIA-QC: AI-empowered data-independent acquisition mass spectrometry-based quality control. Nat Commun. 2025 Jan 21; 16(1):892.
Gao H, Zhu Y, Wang D, Nie Z, Wang H, Wang G, Liang S, Xie Y, Sun Y, Jiang W, Dong Z, Qian L, Wang X, Liang M, Chen M, Fang H, Zeng Q, Tian J, Sun Z, Xue J, Li S, Chen C, Liu X, Lyu X, Guo Z, Qi Y, Wu R, Du X, Tong T, Kong F, Han L, Wang M, Zhao Y, Dai X, He F, Guo T. PMID: 39837863; PMCID: PMC11751188.
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Animals
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Letter to the Editor: Gene Targeting in Arabidopsis through One-Armed Homology-Directed Repair. Plant Cell Physiol. 2024 Dec 21; 65(12):1937-1940.
Mudgett M, Abramson B, Dai X, Kang R, Young E, Michael T, Zhao Y. PMID: 39366925.
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1 Fields:
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Integrated proteomic and glycoproteomic analysis reveals heterogeneity and molecular signatures of brain metastases from lung adenocarcinomas. Cancer Lett. 2024 Nov 28; 605:217262.
Zhao Y, Zhang D, Meng B, Zhang Y, Ma S, Zeng J, Wang X, Peng T, Gong X, Zhai R, Dong L, Jiang Y, Dai X, Fang X, Jia W. PMID: 39341452.
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Humans
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Investigation of physiological roles of UDP-glycosyltransferase UGT76F2 in auxin homeostasis through the TAA-YUCCA auxin biosynthesis pathway. Biosci Biotechnol Biochem. 2024 Sep 04; 88(11):1326-1335.
Harada M, Kubotsu T, Agui T, Dai X, Zhao Y, Kasahara H, Hayashi KI. PMID: 39232210.
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2 Fields:
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AnimalsCells
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A Novel Integrated Pipeline for Site-Specific Quantification of N-glycosylation. Phenomics. 2024 Jun; 4(3):213-226.
Zhao Y, Zhang Y, Meng B, Luo M, Li G, Liu F, Chang C, Dai X, Fang X. PMID: 39398429; PMCID: PMC11467155.
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7
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Integrated plasma proteomics and N-glycoproteomics reveals alterations in the N-glycosylation in Chinese hepatocellular carcinoma patients. Proteomics Clin Appl. 2024 Jul; 18(4):e202300029.
Zeng J, Rong W, Meng B, Zheng L, Peng T, Zhai R, Jiang Y, Xiao T, Fang X, Zhang Y, Zhao Y, Dai X. PMID: 38345243.
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1 Fields:
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HumansCells
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Suppression of pinoid mutant phenotypes by mutations in PIN-FORMED 1 and PIN1-GFP fusion. Proc Natl Acad Sci U S A. 2023 Nov 28; 120(48):e2312918120.
Mudgett M, Shen Z, Dai X, Briggs SP, Zhao Y. PMID: 37983505; PMCID: PMC10691239.
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4 Fields:
Translation:
Animals
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Nanoparticle Deep-Subwavelength Dynamics Empowered by Optical Meron-Antimeron Topology. Nano Lett. 2024 Jan 10; 24(1):104-113.
Lu C, Wang B, Fang X, Tsai DP, Zhu W, Song Q, Deng X, He T, Gong X, Luo H, Wang Z, Dai X, Shi Y, Cheng X. PMID: 37943097.
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2 Fields:
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Precise Control of Trypsin Immobilization by a Programmable DNA Tetrahedron Designed for Ultrafast Proteome Digestion and Accurate Protein Quantification. Anal Chem. 2023 10 31; 95(43):15875-15883.
Fan X, Chu Z, Zhu M, Song Y, Zhao Y, Meng B, Gong X, Zhang D, Jiang Y, Wu L, Tamiya K, Yu X, Zhai R, Dai X, Fang X. PMID: 37851939.
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HumansCells
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Retraction Note: Selective inheritance of target genes from only one parent of sexually reproduced F1 progeny in Arabidopsis. Nat Commun. 2022 06 07; 13(1):3270.
Zhang T, Mudgett M, Rambabu R, Abramson B, Dai X, Michael TP, Zhao Y. PMID: 35672322; PMCID: PMC9174252.
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PubMed Mentions:
2 Fields:
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Local conjugation of auxin by the GH3 amido synthetases is required for normal development of roots and flowers in Arabidopsis. Biochem Biophys Res Commun. 2022 01 22; 589:16-22.
Guo R, Hu Y, Aoi Y, Hira H, Ge C, Dai X, Kasahara H, Zhao Y. PMID: 34883285.
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PubMed Mentions:
17 Fields:
Translation:
Animals
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Selective inheritance of target genes from only one parent of sexually reproduced F1 progeny in Arabidopsis. Nat Commun. 2021 06 22; 12(1):3854.
Zhang T, Mudgett M, Rambabu R, Abramson B, Dai X, Michael TP, Zhao Y. PMID: 34158505; PMCID: PMC8219824.
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PubMed Mentions:
9 Fields:
Translation:
AnimalsCells
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UDP-glucosyltransferase UGT84B1 regulates the levels of indole-3-acetic acid and phenylacetic acid in Arabidopsis. Biochem Biophys Res Commun. 2020 11 05; 532(2):244-250.
Aoi Y, Hira H, Hayakawa Y, Liu H, Fukui K, Dai X, Tanaka K, Hayashi KI, Zhao Y, Kasahara H. PMID: 32868079; PMCID: PMC7641881.
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19 Fields:
Translation:
AnimalsCells
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Role of Arabidopsis INDOLE-3-ACETIC ACID CARBOXYL METHYLTRANSFERASE 1 in auxin metabolism. Biochem Biophys Res Commun. 2020 07 05; 527(4):1033-1038.
Takubo E, Kobayashi M, Hirai S, Aoi Y, Ge C, Dai X, Fukui K, Hayashi KI, Zhao Y, Kasahara H. PMID: 32444138; PMCID: PMC7331827.
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11 Fields:
Translation:
AnimalsCells
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Two homologous INDOLE-3-ACETAMIDE (IAM) HYDROLASE genes are required for the auxin effects of IAM in Arabidopsis. J Genet Genomics. 2020 03 20; 47(3):157-165.
Gao Y, Dai X, Aoi Y, Takebayashi Y, Yang L, Guo X, Zeng Q, Yu H, Kasahara H, Zhao Y. PMID: 32327358; PMCID: PMC7231657.
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PubMed Mentions:
15 Fields:
Translation:
AnimalsCells
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An Essential Role for miRNA167 in Maternal Control of Embryonic and Seed Development. Plant Physiol. 2019 05; 180(1):453-464.
Yao X, Chen J, Zhou J, Yu H, Ge C, Zhang M, Gao X, Dai X, Yang ZN, Zhao Y. PMID: 30867333; PMCID: PMC6501067.
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PubMed Mentions:
42 Fields:
Translation:
Animals
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Modulation of Auxin Signaling and Development by Polyadenylation Machinery. Plant Physiol. 2019 02; 179(2):686-699.
Zeng W, Dai X, Sun J, Hou Y, Ma X, Cao X, Zhao Y, Cheng Y. PMID: 30487141; PMCID: PMC6426405.
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PubMed Mentions:
13 Fields:
Translation:
AnimalsCells
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Auxin production in diploid microsporocytes is necessary and sufficient for early stages of pollen development. PLoS Genet. 2018 05; 14(5):e1007397.
Yao X, Tian L, Yang J, Zhao YN, Zhu YX, Dai X, Zhao Y, Yang ZN. PMID: 29813066; PMCID: PMC5993292.
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PubMed Mentions:
42 Fields:
Translation:
AnimalsCells
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Gas-phase complexation of α-/β-cyclodextrin with amino acids studied by ion mobility-mass spectrometry and molecular dynamics simulations. Talanta. 2018 Aug 15; 186:1-7.
Chen Y, Zuo Z, Dai X, Xiao P, Fang X, Wang X, Wang W, Ding CF. PMID: 29784335.
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5 Fields:
Translation:
Cells
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On Improving CRISPR for Editing Plant Genes: Ribozyme-Mediated Guide RNA Production and Fluorescence-Based Technology for Isolating Transgene-Free Mutants Generated by CRISPR. Prog Mol Biol Transl Sci. 2017; 149:151-166.
He Y, Wang R, Dai X, Zhao Y. PMID: 28712495.
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14 Fields:
Translation:
Cells
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An Effective Strategy for Reliably Isolating Heritable and Cas9-Free Arabidopsis Mutants Generated by CRISPR/Cas9-Mediated Genome Editing. Plant Physiol. 2016 Jul; 171(3):1794-800.
Gao X, Chen J, Dai X, Zhang D, Zhao Y. PMID: 27208253; PMCID: PMC4936589.
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133 Fields:
Translation:
Animals
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Embryonic lethality of Arabidopsis abp1-1 is caused by deletion of the adjacent BSM gene. Nat Plants. 2015; 1.
Dai X, Zhang Y, Zhang D, Chen J, Gao X, Estelle M, Zhao Y. PMID: 27057346; PMCID: PMC4821195.
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23 Fields:
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Distinct Characteristics of Indole-3-Acetic Acid and Phenylacetic Acid, Two Common Auxins in Plants. Plant Cell Physiol. 2015 Aug; 56(8):1641-54.
Sugawara S, Mashiguchi K, Tanaka K, Hishiyama S, Sakai T, Hanada K, Kinoshita-Tsujimura K, Yu H, Dai X, Takebayashi Y, Takeda-Kamiya N, Kakimoto T, Kawaide H, Natsume M, Estelle M, Zhao Y, Hayashi K, Kamiya Y, Kasahara H. PMID: 26076971; PMCID: PMC4523386.
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67 Fields:
Translation:
AnimalsCells
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Auxin binding protein 1 (ABP1) is not required for either auxin signaling or Arabidopsis development. Proc Natl Acad Sci U S A. 2015 Feb 17; 112(7):2275-80.
Gao Y, Zhang Y, Zhang D, Dai X, Estelle M, Zhao Y. PMID: 25646447; PMCID: PMC4343106.
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169 Fields:
Translation:
AnimalsCells
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Auxin overproduction in shoots cannot rescue auxin deficiencies in Arabidopsis roots. Plant Cell Physiol. 2014 Jun; 55(6):1072-9.
Chen Q, Dai X, De-Paoli H, Cheng Y, Takebayashi Y, Kasahara H, Kamiya Y, Zhao Y. PMID: 24562917; PMCID: PMC4051135.
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PubMed Mentions:
114 Fields:
Translation:
Animals
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Coordination of auxin and ethylene biosynthesis by the aminotransferase VAS1. Nat Chem Biol. 2013 Apr; 9(4):244-6.
Zheng Z, Guo Y, Novák O, Dai X, Zhao Y, Ljung K, Noel JP, Chory J. PMID: 23377040; PMCID: PMC3948326.
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52 Fields:
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AnimalsCells
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The biochemical mechanism of auxin biosynthesis by an arabidopsis YUCCA flavin-containing monooxygenase. J Biol Chem. 2013 Jan 18; 288(3):1448-57.
Dai X, Mashiguchi K, Chen Q, Kasahara H, Kamiya Y, Ojha S, DuBois J, Ballou D, Zhao Y. PMID: 23188833; PMCID: PMC3548458.
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87 Fields:
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AnimalsCells
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Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. Proc Natl Acad Sci U S A. 2011 Nov 08; 108(45):18518-23.
Won C, Shen X, Mashiguchi K, Zheng Z, Dai X, Cheng Y, Kasahara H, Kamiya Y, Chory J, Zhao Y. PMID: 22025721; PMCID: PMC3215067.
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289 Fields:
Translation:
Animals
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Allelic analyses of the Arabidopsis YUC1 locus reveal residues and domains essential for the functions of YUC family of flavin monooxygenases. J Integr Plant Biol. 2011 Jan; 53(1):54-62.
Hou X, Liu S, Pierri F, Dai X, Qu LJ, Zhao Y. PMID: 21205174; PMCID: PMC3060657.
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PubMed Mentions:
15 Fields:
Translation:
AnimalsCells
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NPY genes play an essential role in root gravitropic responses in Arabidopsis. Mol Plant. 2011 Jan; 4(1):171-9.
Li Y, Dai X, Cheng Y, Zhao Y. PMID: 20833732; PMCID: PMC3026118.
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24 Fields:
Translation:
Animals
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NPY genes and AGC kinases define two key steps in auxin-mediated organogenesis in Arabidopsis. Proc Natl Acad Sci U S A. 2008 Dec 30; 105(52):21017-22.
Cheng Y, Qin G, Dai X, Zhao Y. PMID: 19075219; PMCID: PMC2634868.
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67 Fields:
Translation:
Animals
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NPY1, a BTB-NPH3-like protein, plays a critical role in auxin-regulated organogenesis in Arabidopsis. Proc Natl Acad Sci U S A. 2007 Nov 20; 104(47):18825-9.
Cheng Y, Qin G, Dai X, Zhao Y. PMID: 18000043; PMCID: PMC2141861.
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70 Fields:
Translation:
AnimalsCells
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Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis. Plant Cell. 2007 Aug; 19(8):2430-9.
Cheng Y, Dai X, Zhao Y. PMID: 17704214; PMCID: PMC2002601.
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PubMed Mentions:
280 Fields:
Translation:
Animals
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A new CULLIN 1 mutant has altered responses to hormones and light in Arabidopsis. Plant Physiol. 2007 Feb; 143(2):684-96.
Moon J, Zhao Y, Dai X, Zhang W, Gray WM, Huq E, Estelle M. PMID: 17158585; PMCID: PMC1803743.
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PubMed Mentions:
50 Fields:
Translation:
AnimalsCells
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Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis. Genes Dev. 2006 Jul 01; 20(13):1790-9.
Cheng Y, Dai X, Zhao Y. PMID: 16818609; PMCID: PMC1522075.
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PubMed Mentions:
504 Fields:
Translation:
Animals
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A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis. Plant Physiol. 2006 Mar; 140(3):899-908.
Li J, Dai X, Zhao Y. PMID: 16461383; PMCID: PMC1400570.
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75 Fields:
Translation:
AnimalsCells
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A mutation in the anticodon of a single tRNAala is sufficient to confer auxin resistance in Arabidopsis. Plant Physiol. 2005 Nov; 139(3):1284-90.
Perry J, Dai X, Zhao Y. PMID: 16244142; PMCID: PMC1283765.
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PubMed Mentions:
7 Fields:
Translation:
AnimalsCells
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Genetic and chemical analyses of the action mechanisms of sirtinol in Arabidopsis. Proc Natl Acad Sci U S A. 2005 Feb 22; 102(8):3129-34.
Dai X, Hayashi K, Nozaki H, Cheng Y, Zhao Y. PMID: 15710899; PMCID: PMC549487.
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PubMed Mentions:
35 Fields:
Translation:
Animals
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AtCAND1, a HEAT-repeat protein that participates in auxin signaling in Arabidopsis. Plant Physiol. 2004 Jun; 135(2):1020-6.
Cheng Y, Dai X, Zhao Y. PMID: 15181201; PMCID: PMC514136.
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PubMed Mentions:
50 Fields:
Translation:
HumansAnimalsCells
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SIR1, an upstream component in auxin signaling identified by chemical genetics. Science. 2003 Aug 22; 301(5636):1107-10.
Zhao Y, Dai X, Blackwell HE, Schreiber SL, Chory J. PMID: 12893885.
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PubMed Mentions:
66 Fields:
Translation:
AnimalsCells