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Yunde Zhao

TitleProfessor
InstitutionUniversity of California San Diego
DepartmentCell and Developmental Biology
Address9500 Gilman Drive #0116
La Jolla CA 92093
Phone858-822-2670
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    Collapse Research 
    Collapse Research Activities and Funding
    Molecular mechanisms of auxin-mediated plant development
    NIH/NIGMS R01GM114660Apr 1, 2015 - Jan 31, 2019
    Role: Principal Investigator
    Auxin Biosynthesis and Signaling Mechanisms
    NIH/NIGMS R01GM068631Jul 1, 2003 - Feb 28, 2014
    Role: Principal Investigator
    Comprehensive Biology: Exploiting the Yeast Genome
    NIH P41RR011823Sep 30, 1996 - Jun 30, 2016
    Role: Co-Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Zhao Y. Essential Roles of Local Auxin Biosynthesis in Plant Development and in Adaptation to Environmental Changes. Annu Rev Plant Biol. 2018 Apr 29; 69:417-435. PMID: 29489397.
      View in: PubMed
    2. Gao X, Chen J, Dai X, Zhang D, Zhao Y. An Effective Strategy for Reliably Isolating Heritable and Cas9-Free Arabidopsis Mutants Generated by CRISPR/Cas9-Mediated Genome Editing. Plant Physiol. 2016 Jul; 171(3):1794-800. PMID: 27208253; PMCID: PMC4936589.
    3. Hu Y, Zhao Y. Molecular basis for differential light responses in Arabidopsis stems and leaves. Proc Natl Acad Sci U S A. 2016 May 24; 113(21):5774-6. PMID: 27179007; PMCID: PMC4889413 [Available on 11/24/16].
    4. Dai X, Zhang Y, Zhang D, Chen J, Gao X, Estelle M, Zhao Y. Embryonic lethality of Arabidopsis abp1-1 is caused by deletion of the adjacent BSM gene. Nat Plants. 2015; 1. PMID: 27057346.
      View in: PubMed
    5. Zhao Y. Auxin biosynthesis. Arabidopsis Book. 2014; 12:e0173. PMID: 24955076; PMCID: PMC4063437.
    6. Gao Y, Zhao Y. Specific and heritable gene editing in Arabidopsis. Proc Natl Acad Sci U S A. 2014 Mar 25; 111(12):4357-8. PMID: 24639539; PMCID: PMC3970542.
    7. Gao Y, Zhao Y. Self-processing of ribozyme-flanked RNAs into guide RNAs in vitro and in vivo for CRISPR-mediated genome editing. J Integr Plant Biol. 2014 Apr; 56(4):343-9. PMID: 24373158.
      View in: PubMed
    8. Chen Q, Dai X, De-Paoli H, Cheng Y, Takebayashi Y, Kasahara H, Kamiya Y, Zhao Y. Auxin overproduction in shoots cannot rescue auxin deficiencies in Arabidopsis roots. Plant Cell Physiol. 2014 Jun; 55(6):1072-9. PMID: 24562917; PMCID: PMC4051135.
    9. Dai X, Mashiguchi K, Chen Q, Kasahara H, Kamiya Y, Ojha S, DuBois J, Ballou D, Zhao Y. The biochemical mechanism of auxin biosynthesis by an arabidopsis YUCCA flavin-containing monooxygenase. J Biol Chem. 2013 Jan 18; 288(3):1448-57. PMID: 23188833; PMCID: PMC3548458.
    10. Gao Y, Zhao Y. Epigenetic suppression of T-DNA insertion mutants in Arabidopsis. Mol Plant. 2013 Mar; 6(2):539-45. PMID: 22973063; PMCID: PMC3716301.
    11. Zhao Y. Auxin biosynthesis: a simple two-step pathway converts tryptophan to indole-3-acetic acid in plants. Mol Plant. 2012 Mar; 5(2):334-8. PMID: 22155950; PMCID: PMC3309920.
    12. Won C, Shen X, Mashiguchi K, Zheng Z, Dai X, Cheng Y, Kasahara H, Kamiya Y, Chory J, Zhao Y. Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. Proc Natl Acad Sci U S A. 2011 Nov 08; 108(45):18518-23. PMID: 22025721; PMCID: PMC3215067.
    13. Li Y, Dai X, Cheng Y, Zhao Y. NPY genes play an essential role in root gravitropic responses in Arabidopsis. Mol Plant. 2011 Jan; 4(1):171-9. PMID: 20833732; PMCID: PMC3026118.
    14. Zhao Y. Auxin biosynthesis and its role in plant development. Annu Rev Plant Biol. 2010; 61:49-64. PMID: 20192736; PMCID: PMC3070418.
    15. Cheng Y, Qin G, Dai X, Zhao Y. NPY genes and AGC kinases define two key steps in auxin-mediated organogenesis in Arabidopsis. Proc Natl Acad Sci U S A. 2008 Dec 30; 105(52):21017-22. PMID: 19075219; PMCID: PMC2634868.
    16. Zhao Y. The role of local biosynthesis of auxin and cytokinin in plant development. Curr Opin Plant Biol. 2008 Feb; 11(1):16-22. PMID: 18409210.
      View in: PubMed
    17. Cheng Y, Qin G, Dai X, Zhao Y. NPY1, a BTB-NPH3-like protein, plays a critical role in auxin-regulated organogenesis in Arabidopsis. Proc Natl Acad Sci U S A. 2007 Nov 20; 104(47):18825-9. PMID: 18000043; PMCID: PMC2141861.
    18. Cheng Y, Dai X, Zhao Y. Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis. Plant Cell. 2007 Aug; 19(8):2430-9. PMID: 17704214; PMCID: PMC2002601.
    19. Cheng Y, Dai X, Zhao Y. Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis. Genes Dev. 2006 Jul 01; 20(13):1790-9. PMID: 16818609; PMCID: PMC1522075.
    20. Li J, Dai X, Zhao Y. A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis. Plant Physiol. 2006 Mar; 140(3):899-908. PMID: 16461383; PMCID: PMC1400570.
    21. Perry J, Dai X, Zhao Y. A mutation in the anticodon of a single tRNAala is sufficient to confer auxin resistance in Arabidopsis. Plant Physiol. 2005 Nov; 139(3):1284-90. PMID: 16244142; PMCID: PMC1283765.
    22. Dai X, Hayashi K, Nozaki H, Cheng Y, Zhao Y. Genetic and chemical analyses of the action mechanisms of sirtinol in Arabidopsis. Proc Natl Acad Sci U S A. 2005 Feb 22; 102(8):3129-34. PMID: 15710899; PMCID: PMC549487.
    23. Cheng Y, Dai X, Zhao Y. AtCAND1, a HEAT-repeat protein that participates in auxin signaling in Arabidopsis. Plant Physiol. 2004 Jun; 135(2):1020-6. PMID: 15181201; PMCID: PMC514136.
    24. Zhao Y, Dai X, Blackwell HE, Schreiber SL, Chory J. SIR1, an upstream component in auxin signaling identified by chemical genetics. Science. 2003 Aug 22; 301(5636):1107-10. PMID: 12893885.
      View in: PubMed
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