Yunde Zhao

Title(s)Professor, Cell and Developmental Biology
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Research 
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    Molecular mechanisms of auxin-mediated plant development
    NIH R01GM114660Apr 1, 2015 - Jan 31, 2020
    Role: Principal Investigator
    Auxin Biosynthesis and Signaling Mechanisms
    NIH R01GM068631Jul 1, 2003 - Feb 28, 2014
    Role: Principal Investigator
    Comprehensive Biology: Exploiting the Yeast Genome
    NIH P41RR011823Sep 30, 1996 - Jun 30, 2016
    Role: Co-Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Suppression of pinoid mutant phenotypes by mutations in PIN-FORMED 1 and PIN1-GFP fusion. Proc Natl Acad Sci U S A. 2023 Nov 28; 120(48):e2312918120. Mudgett M, Shen Z, Dai X, Briggs SP, Zhao Y. PMID: 37983505; PMCID: PMC10691239.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    2. Plant Physiology welcomes 19 new assistant features editors. Plant Physiol. 2023 02 12; 191(2):809-810. Zhao Y, Blatt M, Williams M. PMID: 36459459; PMCID: PMC9922383.
      View in: PubMed   Mentions:    Fields:    
    3. Retraction Note: Selective inheritance of target genes from only one parent of sexually reproduced F1 progeny in Arabidopsis. Nat Commun. 2022 06 07; 13(1):3270. Zhang T, Mudgett M, Rambabu R, Abramson B, Dai X, Michael TP, Zhao Y. PMID: 35672322; PMCID: PMC9174252.
      View in: PubMed   Mentions: 2     Fields:    
    4. Plant biology: Local auxin synthesis drives pollen maturation in barley. Curr Biol. 2022 04 25; 32(8):R370-R372. Mudgett M, Zhao Y. PMID: 35472426.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    5. Plant Physiology welcomes 13 new Assistant Features Editors. Plant Physiol. 2022 02 04; 188(2):919-920. Zhao Y, Williams M, Blatt M. PMID: 34931245; PMCID: PMC8825257.
      View in: PubMed   Mentions: 1     Fields:    
    6. Local conjugation of auxin by the GH3 amido synthetases is required for normal development of roots and flowers in Arabidopsis. Biochem Biophys Res Commun. 2022 01 22; 589:16-22. Guo R, Hu Y, Aoi Y, Hira H, Ge C, Dai X, Kasahara H, Zhao Y. PMID: 34883285.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    7. Selective inheritance of target genes from only one parent of sexually reproduced F1 progeny in Arabidopsis. Nat Commun. 2021 06 22; 12(1):3854. Zhang T, Mudgett M, Rambabu R, Abramson B, Dai X, Michael TP, Zhao Y. PMID: 34158505; PMCID: PMC8219824.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    8. An amiRNA screen uncovers redundant CBF and ERF34/35 transcription factors that differentially regulate arsenite and cadmium responses. Plant Cell Environ. 2021 05; 44(5):1692-1706. Xie Q, Yu Q, Jobe TO, Pham A, Ge C, Guo Q, Liu J, Liu H, Zhang H, Zhao Y, Xue S, Hauser F, Schroeder JI. PMID: 33554343; PMCID: PMC8068611.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    9. Two homologous INDOLE-3-ACETAMIDE (IAM) HYDROLASE genes are required for the auxin effects of IAM in Arabidopsis. J Genet Genomics. 2020 03 20; 47(3):157-165. Gao Y, Dai X, Aoi Y, Takebayashi Y, Yang L, Guo X, Zeng Q, Yu H, Kasahara H, Zhao Y. PMID: 32327358; PMCID: PMC7231657.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    10. MAP3Kinase-dependent SnRK2-kinase activation is required for abscisic acid signal transduction and rapid osmotic stress response. Nat Commun. 2020 01 02; 11(1):12. Takahashi Y, Zhang J, Hsu PK, Ceciliato PHO, Zhang L, Dubeaux G, Munemasa S, Ge C, Zhao Y, Hauser F, Schroeder JI. PMID: 31896774; PMCID: PMC6940395.
      View in: PubMed   Mentions: 66     Fields:    Translation:AnimalsCells
    11. Fluorescence Marker-Assisted Isolation of Cas9-Free and CRISPR-Edited Arabidopsis Plants. Methods Mol Biol. 2019; 1917:147-154. Yu H, Zhao Y. PMID: 30610634.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    12. Essential Roles of Local Auxin Biosynthesis in Plant Development and in Adaptation to Environmental Changes. Annu Rev Plant Biol. 2018 04 29; 69:417-435. Zhao Y. PMID: 29489397.
      View in: PubMed   Mentions: 105     Fields:    Translation:Cells
    13. An Effective Strategy for Reliably Isolating Heritable and Cas9-Free Arabidopsis Mutants Generated by CRISPR/Cas9-Mediated Genome Editing. Plant Physiol. 2016 Jul; 171(3):1794-800. Gao X, Chen J, Dai X, Zhang D, Zhao Y. PMID: 27208253; PMCID: PMC4936589.
      View in: PubMed   Mentions: 113     Fields:    Translation:Animals
    14. Molecular basis for differential light responses in Arabidopsis stems and leaves. Proc Natl Acad Sci U S A. 2016 May 24; 113(21):5774-6. Hu Y, Zhao Y. PMID: 27179007; PMCID: PMC4889413.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    15. Embryonic lethality of Arabidopsis abp1-1 is caused by deletion of the adjacent BSM gene. Nat Plants. 2015; 1. Dai X, Zhang Y, Zhang D, Chen J, Gao X, Estelle M, Zhao Y. PMID: 27057346; PMCID: PMC4821195.
      View in: PubMed   Mentions: 19     Fields:    
    16. Auxin biosynthesis. Arabidopsis Book. 2014; 12:e0173. Zhao Y. PMID: 24955076; PMCID: PMC4063437.
      View in: PubMed   Mentions: 82  
    17. Specific and heritable gene editing in Arabidopsis. Proc Natl Acad Sci U S A. 2014 Mar 25; 111(12):4357-8. Gao Y, Zhao Y. PMID: 24639539; PMCID: PMC3970542.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    18. Self-processing of ribozyme-flanked RNAs into guide RNAs in vitro and in vivo for CRISPR-mediated genome editing. J Integr Plant Biol. 2014 Apr; 56(4):343-9. Gao Y, Zhao Y. PMID: 24373158.
      View in: PubMed   Mentions: 221     Fields:    Translation:Cells
    19. Auxin overproduction in shoots cannot rescue auxin deficiencies in Arabidopsis roots. Plant Cell Physiol. 2014 Jun; 55(6):1072-9. Chen Q, Dai X, De-Paoli H, Cheng Y, Takebayashi Y, Kasahara H, Kamiya Y, Zhao Y. PMID: 24562917; PMCID: PMC4051135.
      View in: PubMed   Mentions: 96     Fields:    Translation:Animals
    20. The biochemical mechanism of auxin biosynthesis by an arabidopsis YUCCA flavin-containing monooxygenase. J Biol Chem. 2013 Jan 18; 288(3):1448-57. Dai X, Mashiguchi K, Chen Q, Kasahara H, Kamiya Y, Ojha S, DuBois J, Ballou D, Zhao Y. PMID: 23188833; PMCID: PMC3548458.
      View in: PubMed   Mentions: 76     Fields:    Translation:AnimalsCells
    21. Epigenetic suppression of T-DNA insertion mutants in Arabidopsis. Mol Plant. 2013 Mar; 6(2):539-45. Gao Y, Zhao Y. PMID: 22973063; PMCID: PMC3716301.
      View in: PubMed   Mentions: 16     Fields:    Translation:Animals
    22. Auxin biosynthesis: a simple two-step pathway converts tryptophan to indole-3-acetic acid in plants. Mol Plant. 2012 Mar; 5(2):334-8. Zhao Y. PMID: 22155950; PMCID: PMC3309920.
      View in: PubMed   Mentions: 182     Fields:    Translation:AnimalsCells
    23. Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. Proc Natl Acad Sci U S A. 2011 Nov 08; 108(45):18518-23. Won C, Shen X, Mashiguchi K, Zheng Z, Dai X, Cheng Y, Kasahara H, Kamiya Y, Chory J, Zhao Y. PMID: 22025721; PMCID: PMC3215067.
      View in: PubMed   Mentions: 259     Fields:    Translation:Animals
    24. NPY genes play an essential role in root gravitropic responses in Arabidopsis. Mol Plant. 2011 Jan; 4(1):171-9. Li Y, Dai X, Cheng Y, Zhao Y. PMID: 20833732; PMCID: PMC3026118.
      View in: PubMed   Mentions: 20     Fields:    Translation:Animals
    25. Auxin biosynthesis and its role in plant development. Annu Rev Plant Biol. 2010; 61:49-64. Zhao Y. PMID: 20192736; PMCID: PMC3070418.
      View in: PubMed   Mentions: 419     Fields:    Translation:AnimalsCells
    26. NPY genes and AGC kinases define two key steps in auxin-mediated organogenesis in Arabidopsis. Proc Natl Acad Sci U S A. 2008 Dec 30; 105(52):21017-22. Cheng Y, Qin G, Dai X, Zhao Y. PMID: 19075219; PMCID: PMC2634868.
      View in: PubMed   Mentions: 61     Fields:    Translation:Animals
    27. The role of local biosynthesis of auxin and cytokinin in plant development. Curr Opin Plant Biol. 2008 Feb; 11(1):16-22. Zhao Y. PMID: 18409210.
      View in: PubMed   Mentions: 65     Fields:    Translation:Animals
    28. NPY1, a BTB-NPH3-like protein, plays a critical role in auxin-regulated organogenesis in Arabidopsis. Proc Natl Acad Sci U S A. 2007 Nov 20; 104(47):18825-9. Cheng Y, Qin G, Dai X, Zhao Y. PMID: 18000043; PMCID: PMC2141861.
      View in: PubMed   Mentions: 63     Fields:    Translation:AnimalsCells
    29. Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis. Plant Cell. 2007 Aug; 19(8):2430-9. Cheng Y, Dai X, Zhao Y. PMID: 17704214; PMCID: PMC2002601.
      View in: PubMed   Mentions: 260     Fields:    Translation:Animals
    30. Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis. Genes Dev. 2006 Jul 01; 20(13):1790-9. Cheng Y, Dai X, Zhao Y. PMID: 16818609; PMCID: PMC1522075.
      View in: PubMed   Mentions: 456     Fields:    Translation:Animals
    31. A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis. Plant Physiol. 2006 Mar; 140(3):899-908. Li J, Dai X, Zhao Y. PMID: 16461383; PMCID: PMC1400570.
      View in: PubMed   Mentions: 71     Fields:    Translation:AnimalsCells
    32. A mutation in the anticodon of a single tRNAala is sufficient to confer auxin resistance in Arabidopsis. Plant Physiol. 2005 Nov; 139(3):1284-90. Perry J, Dai X, Zhao Y. PMID: 16244142; PMCID: PMC1283765.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    33. Genetic and chemical analyses of the action mechanisms of sirtinol in Arabidopsis. Proc Natl Acad Sci U S A. 2005 Feb 22; 102(8):3129-34. Dai X, Hayashi K, Nozaki H, Cheng Y, Zhao Y. PMID: 15710899; PMCID: PMC549487.
      View in: PubMed   Mentions: 35     Fields:    Translation:Animals
    34. AtCAND1, a HEAT-repeat protein that participates in auxin signaling in Arabidopsis. Plant Physiol. 2004 Jun; 135(2):1020-6. Cheng Y, Dai X, Zhao Y. PMID: 15181201; PMCID: PMC514136.
      View in: PubMed   Mentions: 48     Fields:    Translation:HumansAnimalsCells
    35. SIR1, an upstream component in auxin signaling identified by chemical genetics. Science. 2003 Aug 22; 301(5636):1107-10. Zhao Y, Dai X, Blackwell HE, Schreiber SL, Chory J. PMID: 12893885.
      View in: PubMed   Mentions: 64     Fields:    Translation:AnimalsCells
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