Yunde Zhao

Title(s)	Professor, Cell and Developmental Biology
School	Vc-academic Affairs
Address	9500 Gilman Drive # La Jolla CA 92093
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Research

Research Activities and Funding

Molecular mechanisms of auxin-mediated plant development
NIH R01GM114660Apr 1, 2015 - Jan 31, 2020
Role: Principal Investigator

Auxin Biosynthesis and Signaling Mechanisms
NIH R01GM068631Jul 1, 2003 - Feb 28, 2014
Role: Principal Investigator

Comprehensive Biology: Exploiting the Yeast Genome
NIH P41RR011823Sep 30, 1996 - Jun 30, 2016
Role: Co-Investigator

Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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Suppression of pinoid mutant phenotypes by mutations in PIN-FORMED 1 and PIN1-GFP fusion. Proc Natl Acad Sci U S A. 2023 Nov 28; 120(48):e2312918120. Mudgett M, Shen Z, Dai X, Briggs SP, Zhao Y. PMID: 37983505; PMCID: PMC10691239.

View in: PubMed Mentions: Fields:
Sci Science
Translation:Animals
Plant Physiology welcomes 19 new assistant features editors. Plant Physiol. 2023 02 12; 191(2):809-810. Zhao Y, Blatt M, Williams M. PMID: 36459459; PMCID: PMC9922383.

View in: PubMed Mentions: Fields:
Phy Physiology
Retraction Note: Selective inheritance of target genes from only one parent of sexually reproduced F1 progeny in Arabidopsis. Nat Commun. 2022 06 07; 13(1):3270. Zhang T, Mudgett M, Rambabu R, Abramson B, Dai X, Michael TP, Zhao Y. PMID: 35672322; PMCID: PMC9174252.

View in: PubMed Mentions: 2 Fields:
Bio Biology Sci Science
Plant biology: Local auxin synthesis drives pollen maturation in barley. Curr Biol. 2022 04 25; 32(8):R370-R372. Mudgett M, Zhao Y. PMID: 35472426.

View in: PubMed Mentions: 2 Fields:
Bio Biology
Translation:Animals
Plant Physiology welcomes 13 new Assistant Features Editors. Plant Physiol. 2022 02 04; 188(2):919-920. Zhao Y, Williams M, Blatt M. PMID: 34931245; PMCID: PMC8825257.

View in: PubMed Mentions: 1 Fields:
Phy Physiology
Local conjugation of auxin by the GH3 amido synthetases is required for normal development of roots and flowers in Arabidopsis. Biochem Biophys Res Commun. 2022 01 22; 589:16-22. Guo R, Hu Y, Aoi Y, Hira H, Ge C, Dai X, Kasahara H, Zhao Y. PMID: 34883285.

View in: PubMed Mentions: 6 Fields:
Bio Biochemistry Bio Biophysics
Translation:Animals
Selective inheritance of target genes from only one parent of sexually reproduced F1 progeny in Arabidopsis. Nat Commun. 2021 06 22; 12(1):3854. Zhang T, Mudgett M, Rambabu R, Abramson B, Dai X, Michael TP, Zhao Y. PMID: 34158505; PMCID: PMC8219824.

View in: PubMed Mentions: 9 Fields:
Bio Biology Sci Science
Translation:Animals Cells
An amiRNA screen uncovers redundant CBF and ERF34/35 transcription factors that differentially regulate arsenite and cadmium responses. Plant Cell Environ. 2021 05; 44(5):1692-1706. Xie Q, Yu Q, Jobe TO, Pham A, Ge C, Guo Q, Liu J, Liu H, Zhang H, Zhao Y, Xue S, Hauser F, Schroeder JI. PMID: 33554343; PMCID: PMC8068611.

View in: PubMed Mentions: 7 Fields:
Bot Botany Cel Cell Biology
Translation:Animals Cells
Two homologous INDOLE-3-ACETAMIDE (IAM) HYDROLASE genes are required for the auxin effects of IAM in Arabidopsis. J Genet Genomics. 2020 03 20; 47(3):157-165. Gao Y, Dai X, Aoi Y, Takebayashi Y, Yang L, Guo X, Zeng Q, Yu H, Kasahara H, Zhao Y. PMID: 32327358; PMCID: PMC7231657.

View in: PubMed Mentions: 12 Fields:
Gen Genetics
Translation:Animals Cells
MAP3Kinase-dependent SnRK2-kinase activation is required for abscisic acid signal transduction and rapid osmotic stress response. Nat Commun. 2020 01 02; 11(1):12. Takahashi Y, Zhang J, Hsu PK, Ceciliato PHO, Zhang L, Dubeaux G, Munemasa S, Ge C, Zhao Y, Hauser F, Schroeder JI. PMID: 31896774; PMCID: PMC6940395.

View in: PubMed Mentions: 66 Fields:
Bio Biology Sci Science
Translation:Animals Cells
Fluorescence Marker-Assisted Isolation of Cas9-Free and CRISPR-Edited Arabidopsis Plants. Methods Mol Biol. 2019; 1917:147-154. Yu H, Zhao Y. PMID: 30610634.

View in: PubMed Mentions: 12 Fields:
Mol Molecular Biology
Translation:Animals Cells
Essential Roles of Local Auxin Biosynthesis in Plant Development and in Adaptation to Environmental Changes. Annu Rev Plant Biol. 2018 04 29; 69:417-435. Zhao Y. PMID: 29489397.

View in: PubMed Mentions: 105 Fields:
Bot Botany
Translation:Cells
An Effective Strategy for Reliably Isolating Heritable and Cas9-Free Arabidopsis Mutants Generated by CRISPR/Cas9-Mediated Genome Editing. Plant Physiol. 2016 Jul; 171(3):1794-800. Gao X, Chen J, Dai X, Zhang D, Zhao Y. PMID: 27208253; PMCID: PMC4936589.

View in: PubMed Mentions: 113 Fields:
Phy Physiology
Translation:Animals
Molecular basis for differential light responses in Arabidopsis stems and leaves. Proc Natl Acad Sci U S A. 2016 May 24; 113(21):5774-6. Hu Y, Zhao Y. PMID: 27179007; PMCID: PMC4889413.

View in: PubMed Mentions: 1 Fields:
Sci Science
Translation:Animals
Embryonic lethality of Arabidopsis abp1-1 is caused by deletion of the adjacent BSM gene. Nat Plants. 2015; 1. Dai X, Zhang Y, Zhang D, Chen J, Gao X, Estelle M, Zhao Y. PMID: 27057346; PMCID: PMC4821195.

View in: PubMed Mentions: 19 Fields:
Bot Botany Gen Genetics
Auxin biosynthesis. Arabidopsis Book. 2014; 12:e0173. Zhao Y. PMID: 24955076; PMCID: PMC4063437.

View in: PubMed Mentions: 82
Specific and heritable gene editing in Arabidopsis. Proc Natl Acad Sci U S A. 2014 Mar 25; 111(12):4357-8. Gao Y, Zhao Y. PMID: 24639539; PMCID: PMC3970542.

View in: PubMed Mentions: 12 Fields:
Sci Science
Translation:Animals Cells
Self-processing of ribozyme-flanked RNAs into guide RNAs in vitro and in vivo for CRISPR-mediated genome editing. J Integr Plant Biol. 2014 Apr; 56(4):343-9. Gao Y, Zhao Y. PMID: 24373158.

View in: PubMed Mentions: 221 Fields:
Bot Botany
Translation:Cells
Auxin overproduction in shoots cannot rescue auxin deficiencies in Arabidopsis roots. Plant Cell Physiol. 2014 Jun; 55(6):1072-9. Chen Q, Dai X, De-Paoli H, Cheng Y, Takebayashi Y, Kasahara H, Kamiya Y, Zhao Y. PMID: 24562917; PMCID: PMC4051135.

View in: PubMed Mentions: 96 Fields:
Bot Botany Cel Cell Biology
Translation:Animals
The biochemical mechanism of auxin biosynthesis by an arabidopsis YUCCA flavin-containing monooxygenase. J Biol Chem. 2013 Jan 18; 288(3):1448-57. Dai X, Mashiguchi K, Chen Q, Kasahara H, Kamiya Y, Ojha S, DuBois J, Ballou D, Zhao Y. PMID: 23188833; PMCID: PMC3548458.

View in: PubMed Mentions: 76 Fields:
Bio Biochemistry
Translation:Animals Cells
Epigenetic suppression of T-DNA insertion mutants in Arabidopsis. Mol Plant. 2013 Mar; 6(2):539-45. Gao Y, Zhao Y. PMID: 22973063; PMCID: PMC3716301.

View in: PubMed Mentions: 16 Fields:
Bot Botany Mol Molecular Biology
Translation:Animals
Auxin biosynthesis: a simple two-step pathway converts tryptophan to indole-3-acetic acid in plants. Mol Plant. 2012 Mar; 5(2):334-8. Zhao Y. PMID: 22155950; PMCID: PMC3309920.

View in: PubMed Mentions: 182 Fields:
Bot Botany Mol Molecular Biology
Translation:Animals Cells
Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. Proc Natl Acad Sci U S A. 2011 Nov 08; 108(45):18518-23. Won C, Shen X, Mashiguchi K, Zheng Z, Dai X, Cheng Y, Kasahara H, Kamiya Y, Chory J, Zhao Y. PMID: 22025721; PMCID: PMC3215067.

View in: PubMed Mentions: 259 Fields:
Sci Science
Translation:Animals
NPY genes play an essential role in root gravitropic responses in Arabidopsis. Mol Plant. 2011 Jan; 4(1):171-9. Li Y, Dai X, Cheng Y, Zhao Y. PMID: 20833732; PMCID: PMC3026118.

View in: PubMed Mentions: 20 Fields:
Bot Botany Mol Molecular Biology
Translation:Animals
Auxin biosynthesis and its role in plant development. Annu Rev Plant Biol. 2010; 61:49-64. Zhao Y. PMID: 20192736; PMCID: PMC3070418.

View in: PubMed Mentions: 419 Fields:
Bot Botany
Translation:Animals Cells
NPY genes and AGC kinases define two key steps in auxin-mediated organogenesis in Arabidopsis. Proc Natl Acad Sci U S A. 2008 Dec 30; 105(52):21017-22. Cheng Y, Qin G, Dai X, Zhao Y. PMID: 19075219; PMCID: PMC2634868.

View in: PubMed Mentions: 61 Fields:
Sci Science
Translation:Animals
The role of local biosynthesis of auxin and cytokinin in plant development. Curr Opin Plant Biol. 2008 Feb; 11(1):16-22. Zhao Y. PMID: 18409210.

View in: PubMed Mentions: 65 Fields:
Bot Botany
Translation:Animals
NPY1, a BTB-NPH3-like protein, plays a critical role in auxin-regulated organogenesis in Arabidopsis. Proc Natl Acad Sci U S A. 2007 Nov 20; 104(47):18825-9. Cheng Y, Qin G, Dai X, Zhao Y. PMID: 18000043; PMCID: PMC2141861.

View in: PubMed Mentions: 63 Fields:
Sci Science
Translation:Animals Cells
Auxin synthesized by the YUCCA flavin monooxygenases is essential for embryogenesis and leaf formation in Arabidopsis. Plant Cell. 2007 Aug; 19(8):2430-9. Cheng Y, Dai X, Zhao Y. PMID: 17704214; PMCID: PMC2002601.

View in: PubMed Mentions: 260 Fields:
Bot Botany Cel Cell Biology
Translation:Animals
Auxin biosynthesis by the YUCCA flavin monooxygenases controls the formation of floral organs and vascular tissues in Arabidopsis. Genes Dev. 2006 Jul 01; 20(13):1790-9. Cheng Y, Dai X, Zhao Y. PMID: 16818609; PMCID: PMC1522075.

View in: PubMed Mentions: 456 Fields:
Mol Molecular Biology
Translation:Animals
A role for auxin response factor 19 in auxin and ethylene signaling in Arabidopsis. Plant Physiol. 2006 Mar; 140(3):899-908. Li J, Dai X, Zhao Y. PMID: 16461383; PMCID: PMC1400570.

View in: PubMed Mentions: 71 Fields:
Phy Physiology
Translation:Animals Cells
A mutation in the anticodon of a single tRNAala is sufficient to confer auxin resistance in Arabidopsis. Plant Physiol. 2005 Nov; 139(3):1284-90. Perry J, Dai X, Zhao Y. PMID: 16244142; PMCID: PMC1283765.

View in: PubMed Mentions: 7 Fields:
Phy Physiology
Translation:Animals Cells
Genetic and chemical analyses of the action mechanisms of sirtinol in Arabidopsis. Proc Natl Acad Sci U S A. 2005 Feb 22; 102(8):3129-34. Dai X, Hayashi K, Nozaki H, Cheng Y, Zhao Y. PMID: 15710899; PMCID: PMC549487.

View in: PubMed Mentions: 35 Fields:
Sci Science
Translation:Animals
AtCAND1, a HEAT-repeat protein that participates in auxin signaling in Arabidopsis. Plant Physiol. 2004 Jun; 135(2):1020-6. Cheng Y, Dai X, Zhao Y. PMID: 15181201; PMCID: PMC514136.

View in: PubMed Mentions: 48 Fields:
Phy Physiology
Translation:Humans Animals Cells
SIR1, an upstream component in auxin signaling identified by chemical genetics. Science. 2003 Aug 22; 301(5636):1107-10. Zhao Y, Dai X, Blackwell HE, Schreiber SL, Chory J. PMID: 12893885.

View in: PubMed Mentions: 64 Fields:
Sci Science
Translation:Animals Cells