Jie Xu

Title(s)	Postdoctoral Scholar, Cellular and Molecular Medicine
School	Vc-health Sciences-schools
Address	9500 Gilman Drive # La Jolla CA 92093
vCard	Download vCard

Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

Altmetrics Details

PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Cellular fate of a plant virus immunotherapy candidate. Commun Biol. 2024 Oct 24; 7(1):1382. Omole AO, Affonso de Oliveira JF, Sutorus L, Karan S, Zhao Z, Neun BW, Cedrone E, Clogston JD, Xu J, Sierk M, Chen Q, Meerzaman D, Dobrovolskaia MA, Steinmetz NF. PMID: 39443610; PMCID: PMC11499861.

View in: PubMed Mentions:
Droplet Hi-C enables scalable, single-cell profiling of chromatin architecture in heterogeneous tissues. Nat Biotechnol. 2024 Oct 18. Chang L, Xie Y, Taylor B, Wang Z, Sun J, Armand EJ, Mishra S, Xu J, Tastemel M, Lie A, Gibbs ZA, Indralingam HS, Tan TM, Bejar R, Chen CC, Furnari FB, Hu M, Ren B. PMID: 39424717.

View in: PubMed Mentions: Fields:
Bio Biotechnology
Built to be imperfect. Nat Cell Biol. 2024 Aug; 26(8):1229-1230. Xu J, Ren B. PMID: 38969761.

View in: PubMed Mentions: Fields:
Cel Cell Biology
Single-cell analysis of chromatin accessibility in the adult mouse brain. Nature. 2023 Dec; 624(7991):378-389. Zu S, Li YE, Wang K, Armand EJ, Mamde S, Amaral ML, Wang Y, Chu A, Xie Y, Miller M, Xu J, Wang Z, Zhang K, Jia B, Hou X, Lin L, Yang Q, Lee S, Li B, Kuan S, Liu H, Zhou J, Pinto-Duarte A, Lucero J, Osteen J, Nunn M, Smith KA, Tasic B, Yao Z, Zeng H, Wang Z, Shang J, Behrens MM, Ecker JR, Wang A, Preissl S, Ren B. PMID: 38092917; PMCID: PMC10719105.

View in: PubMed Mentions: 8 Fields:
Sci Science
Translation:Humans Animals Cells
Subtype-specific 3D genome alteration in acute myeloid leukaemia. Nature. 2022 Nov; 611(7935):387-398. Xu J, Song F, Lyu H, Kobayashi M, Zhang B, Zhao Z, Hou Y, Wang X, Luan Y, Jia B, Stasiak L, Wong JH, Wang Q, Jin Q, Jin Q, Fu Y, Yang H, Hardison RC, Dovat S, Platanias LC, Diao Y, Yang Y, Yamada T, Viny AD, Levine RL, Claxton D, Broach JR, Zheng H, Yue F. PMID: 36289338; PMCID: PMC10060167.

View in: PubMed Mentions: 56 Fields:
Sci Science
Translation:Humans Cells
Noncoding genetic variation in GATA3 increases acute lymphoblastic leukemia risk through local and global changes in chromatin conformation. Nat Genet. 2022 02; 54(2):170-179. Yang H, Zhang H, Luan Y, Liu T, Yang W, Roberts KG, Qian MX, Zhang B, Yang W, Perez-Andreu V, Xu J, Iyyanki S, Kuang D, Stasiak LA, Reshmi SC, Gastier-Foster J, Smith C, Pui CH, Evans WE, Hunger SP, Platanias LC, Relling MV, Mullighan CG, Loh ML, Yue F, Yang JJ. PMID: 35115686; PMCID: PMC9794680.

View in: PubMed Mentions: 17 Fields:
Gen Genetics
Translation:Humans Cells
Genome-wide detection of enhancer-hijacking events from chromatin interaction data in rearranged genomes. Nat Methods. 2021 06; 18(6):661-668. Wang X, Xu J, Zhang B, Hou Y, Song F, Lyu H, Yue F. PMID: 34092790; PMCID: PMC8191102.

View in: PubMed Mentions: 54 Fields:
Cli Clinical Laboratory Techniques
Translation:Humans Cells
Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer. Genome Biol. 2021 04 15; 22(1):105. Iyyanki T, Zhang B, Wang Q, Hou Y, Jin Q, Xu J, Yang H, Liu T, Wang X, Song F, Luan Y, Yamashita H, Chien R, Lyu H, Zhang L, Wang L, Warrick J, Raman JD, Meeks JJ, DeGraff DJ, Yue F. PMID: 33858483; PMCID: PMC8048365.

View in: PubMed Mentions: 18 Fields:
Gen Genetics
Translation:Humans Cells
A map of cis-regulatory elements and 3D genome structures in zebrafish. Nature. 2020 12; 588(7837):337-343. Yang H, Luan Y, Liu T, Lee HJ, Fang L, Wang Y, Wang X, Zhang B, Jin Q, Ang KC, Xing X, Wang J, Xu J, Song F, Sriranga I, Khunsriraksakul C, Salameh T, Li D, Choudhary MNK, Topczewski J, Wang K, Gerhard GS, Hardison RC, Wang T, Cheng KC, Yue F. PMID: 33239788; PMCID: PMC8183574.

View in: PubMed Mentions: 52 Fields:
Sci Science
Translation:Humans Animals Cells
An integrative ENCODE resource for cancer genomics. Nat Commun. 2020 07 29; 11(1):3696. Zhang J, Lee D, Dhiman V, Jiang P, Xu J, McGillivray P, Yang H, Liu J, Meyerson W, Clarke D, Gu M, Li S, Lou S, Xu J, Lochovsky L, Ung M, Ma L, Yu S, Cao Q, Harmanci A, Yan KK, Sethi A, Gürsoy G, Schoenberg MR, Rozowsky J, Warrell J, Emani P, Yang YT, Galeev T, Kong X, Liu S, Li X, Krishnan J, Feng Y, Rivera-Mulia JC, Adrian J, Broach JR, Bolt M, Moran J, Fitzgerald D, Dileep V, Liu T, Mei S, Sasaki T, Trevilla-Garcia C, Wang S, Wang Y, Zang C, Wang D, Klein RJ, Snyder M, Gilbert DM, Yip K, Cheng C, Yue F, Liu XS, White KP, Gerstein M. PMID: 32728046; PMCID: PMC7391744.

View in: PubMed Mentions: 67 Fields:
Bio Biology Sci Science
Translation:Humans Cells
Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. 2020 07; 583(7818):699-710. ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, Shen Y, He Y, Mackiewicz M, Pauli-Behn F, Williams BA, Mortazavi A, Keller CA, Zhang XO, Elhajjajy SI, Huey J, Dickel DE, Snetkova V, Wei X, Wang X, Rivera-Mulia JC, Rozowsky J, Zhang J, Chhetri SB, Zhang J, Victorsen A, White KP, Visel A, Yeo GW, Burge CB, Lécuyer E, Gilbert DM, Dekker J, Rinn J, Mendenhall EM, Ecker JR, Kellis M, Klein RJ, Noble WS, Kundaje A, Guigó R, Farnham PJ, Cherry JM, Myers RM, Ren B, Graveley BR, Gerstein MB, Pennacchio LA, Snyder MP, Bernstein BE, Wold B, Hardison RC, Gingeras TR, Stamatoyannopoulos JA, Weng Z. PMID: 32728249; PMCID: PMC7410828.

View in: PubMed Mentions: 782 Fields:
Sci Science
Translation:Humans Animals Cells
Genome-wide colocalization of RNA-DNA interactions and fusion RNA pairs. Proc Natl Acad Sci U S A. 2019 02 19; 116(8):3328-3337. Yan Z, Huang N, Wu W, Chen W, Jiang Y, Chen J, Huang X, Wen X, Xu J, Jin Q, Zhang K, Chen Z, Chien S, Zhong S. PMID: 30718424; PMCID: PMC6386723.

View in: PubMed Mentions: 38 Fields:
Sci Science
Translation:Humans
The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions. Genome Biol. 2018 10 04; 19(1):151. Wang Y, Song F, Zhang B, Zhang L, Xu J, Kuang D, Li D, Choudhary MNK, Li Y, Hu M, Hardison R, Wang T, Yue F. PMID: 30286773; PMCID: PMC6172833.

View in: PubMed Mentions: 283 Fields:
Gen Genetics
Translation:Humans Animals Cells
Integrative detection and analysis of structural variation in cancer genomes. Nat Genet. 2018 10; 50(10):1388-1398. Dixon JR, Xu J, Dileep V, Zhan Y, Song F, Le VT, Yardimci GG, Chakraborty A, Bann DV, Wang Y, Clark R, Zhang L, Yang H, Liu T, Iyyanki S, An L, Pool C, Sasaki T, Rivera-Mulia JC, Ozadam H, Lajoie BR, Kaul R, Buckley M, Lee K, Diegel M, Pezic D, Ernst C, Hadjur S, Odom DT, Stamatoyannopoulos JA, Broach JR, Hardison RC, Ay F, Noble WS, Dekker J, Gilbert DM, Yue F. PMID: 30202056; PMCID: PMC6301019.

View in: PubMed Mentions: 162 Fields:
Gen Genetics
Translation:Humans Cells
Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus. Nat Commun. 2018 02 21; 9(1):750. Zhang Y, An L, Xu J, Zhang B, Zheng WJ, Hu M, Tang J, Yue F. PMID: 29467363; PMCID: PMC5821732.

View in: PubMed Mentions: 83 Fields:
Bio Biology Sci Science
Translation:Humans Cells
The Transcription Factor Bach1 Suppresses the Developmental Angiogenesis of Zebrafish. Oxid Med Cell Longev. 2017; 2017:2143875. Jiang L, Yin M, Xu J, Jia M, Sun S, Wang X, Zhang J, Meng D. PMID: 28392885; PMCID: PMC5368388.

View in: PubMed Mentions: 14 Fields:
Cel Cell Biology Met Metabolism
Translation:Humans Animals Cells
Spherical nanoparticle supported lipid bilayers for the structural study of membrane geometry-sensitive molecules. J Am Chem Soc. 2015 Nov 11; 137(44):14031-14034. Fu R, Gill RL, Kim EY, Briley NE, Tyndall ER, Xu J, Li C, Ramamurthi KS, Flanagan JM, Tian F. PMID: 26488086; PMCID: PMC4677685.

View in: PubMed Mentions: 7 Fields:
Che Chemistry
Translation:Cells
Bach1 Represses Wnt/β-Catenin Signaling and Angiogenesis. Circ Res. 2015 Jul 31; 117(4):364-375. Jiang L, Yin M, Wei X, Liu J, Wang X, Niu C, Kang X, Xu J, Zhou Z, Sun S, Wang X, Zheng X, Duan S, Yao K, Qian R, Sun N, Chen A, Wang R, Zhang J, Chen S, Meng D. PMID: 26123998; PMCID: PMC4676728.

View in: PubMed Mentions: 75 Fields:
Car Cardiology Vas Vascular Diseases
Translation:Humans Animals Cells