Jie Xu

Title(s)Postdoctoral Scholar, Cellular and Molecular Medicine
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Subtype-specific 3D genome alteration in acute myeloid leukaemia. Nature. 2022 Nov; 611(7935):387-398. Xu J, Song F, Lyu H, Kobayashi M, Zhang B, Zhao Z, Hou Y, Wang X, Luan Y, Jia B, Stasiak L, Wong JH, Wang Q, Jin Q, Jin Q, Fu Y, Yang H, Hardison RC, Dovat S, Platanias LC, Diao Y, Yang Y, Yamada T, Viny AD, Levine RL, Claxton D, Broach JR, Zheng H, Yue F. PMID: 36289338.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    2. Noncoding genetic variation in GATA3 increases acute lymphoblastic leukemia risk through local and global changes in chromatin conformation. Nat Genet. 2022 02; 54(2):170-179. Yang H, Zhang H, Luan Y, Liu T, Yang W, Roberts KG, Qian MX, Zhang B, Yang W, Perez-Andreu V, Xu J, Iyyanki S, Kuang D, Stasiak LA, Reshmi SC, Gastier-Foster J, Smith C, Pui CH, Evans WE, Hunger SP, Platanias LC, Relling MV, Mullighan CG, Loh ML, Yue F, Yang JJ. PMID: 35115686.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    3. Genome-wide detection of enhancer-hijacking events from chromatin interaction data in rearranged genomes. Nat Methods. 2021 Jun; 18(6):661-668. Wang X, Xu J, Zhang B, Hou Y, Song F, Lyu H, Yue F. PMID: 34092790; PMCID: PMC8191102.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    4. Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer. Genome Biol. 2021 Apr 15; 22(1):105. Iyyanki T, Zhang B, Wang Q, Hou Y, Jin Q, Xu J, Yang H, Liu T, Wang X, Song F, Luan Y, Yamashita H, Chien R, Lyu H, Zhang L, Wang L, Warrick J, Raman JD, Meeks JJ, DeGraff DJ, Yue F. PMID: 33858483; PMCID: PMC8048365.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    5. A map of cis-regulatory elements and 3D genome structures in zebrafish. Nature. 2020 Dec; 588(7837):337-343. Yang H, Luan Y, Liu T, Lee HJ, Fang L, Wang Y, Wang X, Zhang B, Jin Q, Ang KC, Xing X, Wang J, Xu J, Song F, Sriranga I, Khunsriraksakul C, Salameh T, Li D, Choudhary MNK, Topczewski J, Wang K, Gerhard GS, Hardison RC, Wang T, Cheng KC, Yue F. PMID: 33239788; PMCID: PMC8183574.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansAnimalsCells
    6. An integrative ENCODE resource for cancer genomics. Nat Commun. 2020 Jul 29; 11(1):3696. Zhang J, Lee D, Dhiman V, Jiang P, Xu J, McGillivray P, Yang H, Liu J, Meyerson W, Clarke D, Gu M, Li S, Lou S, Xu J, Lochovsky L, Ung M, Ma L, Yu S, Cao Q, Harmanci A, Yan KK, Sethi A, Gürsoy G, Schoenberg MR, Rozowsky J, Warrell J, Emani P, Yang YT, Galeev T, Kong X, Liu S, Li X, Krishnan J, Feng Y, Rivera-Mulia JC, Adrian J, Broach JR, Bolt M, Moran J, Fitzgerald D, Dileep V, Liu T, Mei S, Sasaki T, Trevilla-Garcia C, Wang S, Wang Y, Zang C, Wang D, Klein RJ, Snyder M, Gilbert DM, Yip K, Cheng C, Yue F, Liu XS, White KP, Gerstein M. PMID: 32728046; PMCID: PMC7391744.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCells
    7. Expanded encyclopaedias of DNA elements in the human and mouse genomes. Nature. 2020 07; 583(7818):699-710. ENCODE Project Consortium, Moore JE, Purcaro MJ, Pratt HE, Epstein CB, Shoresh N, Adrian J, Kawli T, Davis CA, Dobin A, Kaul R, Halow J, Van Nostrand EL, Freese P, Gorkin DU, Shen Y, He Y, Mackiewicz M, Pauli-Behn F, Williams BA, Mortazavi A, Keller CA, Zhang XO, Elhajjajy SI, Huey J, Dickel DE, Snetkova V, Wei X, Wang X, Rivera-Mulia JC, Rozowsky J, Zhang J, Chhetri SB, Zhang J, Victorsen A, White KP, Visel A, Yeo GW, Burge CB, Lécuyer E, Gilbert DM, Dekker J, Rinn J, Mendenhall EM, Ecker JR, Kellis M, Klein RJ, Noble WS, Kundaje A, Guigó R, Farnham PJ, Cherry JM, Myers RM, Ren B, Graveley BR, Gerstein MB, Pennacchio LA, Snyder MP, Bernstein BE, Wold B, Hardison RC, Gingeras TR, Stamatoyannopoulos JA, Weng Z. PMID: 32728249; PMCID: PMC7410828.
      View in: PubMed   Mentions: 374     Fields:    Translation:HumansAnimalsCells
    8. Genome-wide colocalization of RNA-DNA interactions and fusion RNA pairs. Proc Natl Acad Sci U S A. 2019 02 19; 116(8):3328-3337. Yan Z, Huang N, Wu W, Chen W, Jiang Y, Chen J, Huang X, Wen X, Xu J, Jin Q, Zhang K, Chen Z, Chien S, Zhong S. PMID: 30718424; PMCID: PMC6386723.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    9. The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions. Genome Biol. 2018 Oct 04; 19(1):151. Wang Y, Song F, Zhang B, Zhang L, Xu J, Kuang D, Li D, Choudhary MNK, Li Y, Hu M, Hardison R, Wang T, Yue F. PMID: 30286773; PMCID: PMC6172833.
      View in: PubMed   Mentions: 213     Fields:    Translation:HumansAnimalsCells
    10. Integrative detection and analysis of structural variation in cancer genomes. Nat Genet. 2018 10; 50(10):1388-1398. Dixon JR, Xu J, Dileep V, Zhan Y, Song F, Le VT, Yardimci GG, Chakraborty A, Bann DV, Wang Y, Clark R, Zhang L, Yang H, Liu T, Iyyanki S, An L, Pool C, Sasaki T, Rivera-Mulia JC, Ozadam H, Lajoie BR, Kaul R, Buckley M, Lee K, Diegel M, Pezic D, Ernst C, Hadjur S, Odom DT, Stamatoyannopoulos JA, Broach JR, Hardison RC, Ay F, Noble WS, Dekker J, Gilbert DM, Yue F. PMID: 30202056; PMCID: PMC6301019.
      View in: PubMed   Mentions: 113     Fields:    Translation:HumansCells
    11. Enhancing Hi-C data resolution with deep convolutional neural network HiCPlus. Nat Commun. 2018 Feb 21; 9(1):750. Zhang Y, An L, Xu J, Zhang B, Zheng WJ, Hu M, Tang J, Yue F. PMID: 29467363; PMCID: PMC5821732.
      View in: PubMed   Mentions: 55     Fields:    Translation:HumansCells
    12. The Transcription Factor Bach1 Suppresses the Developmental Angiogenesis of Zebrafish. Oxid Med Cell Longev. 2017; 2017:2143875. Jiang L, Yin M, Xu J, Jia M, Sun S, Wang X, Zhang J, Meng D. PMID: 28392885; PMCID: PMC5368388.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCells
    13. Spherical nanoparticle supported lipid bilayers for the structural study of membrane geometry-sensitive molecules. J Am Chem Soc. 2015 Nov 11; 137(44):14031-14034. Fu R, Gill RL, Kim EY, Briley NE, Tyndall ER, Xu J, Li C, Ramamurthi KS, Flanagan JM, Tian F. PMID: 26488086; PMCID: PMC4677685.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    14. Bach1 Represses Wnt/ß-Catenin Signaling and Angiogenesis. Circ Res. 2015 Jul 31; 117(4):364-375. Jiang L, Yin M, Wei X, Liu J, Wang X, Niu C, Kang X, Xu J, Zhou Z, Sun S, Wang X, Zheng X, Duan S, Yao K, Qian R, Sun N, Chen A, Wang R, Zhang J, Chen S, Meng D. PMID: 26123998; PMCID: PMC4676728.
      View in: PubMed   Mentions: 54     Fields:    Translation:HumansAnimalsCells
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