Sheng Zhong
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Title(s) | Professor, Bioengineering |
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School | Vc-academic Affairs |
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Address | 9500 Gilman Drive # La Jolla CA 92093
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vCard | Download vCard |
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Research Bibliographic
Altmetrics Details
PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media.
(Note that publications are often cited in additional ways that are not shown here.)
Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication.
Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication.
Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.)
Click a Field or Translation tag to filter the publications.
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Stress-induced RNA-chromatin interactions promote endothelial dysfunction. Nat Commun. 2020 10 15; 11(1):5211.
Calandrelli R, Xu L, Luo Y, Wu W, Fan X, Nguyen T, Chen CJ, Sriram K, Tang X, Burns AB, Natarajan R, Chen ZB, Zhong S. PMID: 33060583.
View in: PubMed Mentions: Fields: Translation: HumansCells
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Natural display of nuclear-encoded RNA on the cell surface and its impact on cell interaction. Genome Biol. 2020 09 10; 21(1):225.
Huang N, Fan X, Zaleta-Rivera K, Nguyen TC, Zhou J, Luo Y, Gao J, Fang RH, Yan Z, Chen ZB, Zhang L, Zhong S. PMID: 32907628.
View in: PubMed Mentions: Fields:
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Presymptomatic Increase of an Extracellular RNA in Blood Plasma Associates with the Development of Alzheimer's Disease. Curr Biol. 2020 May 18; 30(10):1771-1782.e3.
Yan Z, Zhou Z, Wu Q, Chen ZB, Koo EH, Zhong S. PMID: 32220323.
View in: PubMed Mentions: 3 Fields:
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Mapping RNA-chromatin interactions by sequencing with iMARGI. Nat Protoc. 2019 11; 14(11):3243-3272.
Wu W, Yan Z, Nguyen TC, Bouman Chen Z, Chien S, Zhong S. PMID: 31619811.
View in: PubMed Mentions: 3 Fields: Translation: HumansCells
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Extracellular RNA in a single droplet of human serum reflects physiologic and disease states. Proc Natl Acad Sci U S A. 2019 09 17; 116(38):19200-19208.
Zhou Z, Wu Q, Yan Z, Zheng H, Chen CJ, Liu Y, Qi Z, Calandrelli R, Chen Z, Chien S, Su HI, Zhong S. PMID: 31481608.
View in: PubMed Mentions: 12 Fields: Translation: Humans
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EpiAlignment: alignment with both DNA sequence and epigenomic data. Nucleic Acids Res. 2019 07 02; 47(W1):W11-W19.
Lu J, Cao X, Zhong S. PMID: 31114924.
View in: PubMed Mentions: Fields: Translation: HumansAnimals
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Genome-wide colocalization of RNA-DNA interactions and fusion RNA pairs. Proc Natl Acad Sci U S A. 2019 02 19; 116(8):3328-3337.
Yan Z, Huang N, Wu W, Chen W, Jiang Y, Chen J, Huang X, Wen X, Xu J, Jin Q, Zhang K, Chen Z, Chien S, Zhong S. PMID: 30718424.
View in: PubMed Mentions: 9 Fields: Translation: Humans
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A likelihood approach to testing hypotheses on the co-evolution of epigenome and genome. PLoS Comput Biol. 2018 12; 14(12):e1006673.
Lu J, Cao X, Zhong S. PMID: 30586383.
View in: PubMed Mentions: 1 Fields: Translation: HumansAnimalsCells
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GITAR: An Open Source Tool for Analysis and Visualization of Hi-C Data. Genomics Proteomics Bioinformatics. 2018 10; 16(5):365-372.
Calandrelli R, Wu Q, Guan J, Zhong S. PMID: 30553884.
View in: PubMed Mentions: 5 Fields: Translation: HumansAnimalsCells
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RNA, Action through Interactions. Trends Genet. 2018 11; 34(11):867-882.
Nguyen TC, Zaleta-Rivera K, Huang X, Dai X, Zhong S. PMID: 30177410.
View in: PubMed Mentions: 6 Fields: Translation: HumansCells
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Rainbow-Seq: Combining Cell Lineage Tracing with Single-Cell RNA Sequencing in Preimplantation Embryos. iScience. 2018 Sep 28; 7:16-29.
Biase FH, Wu Q, Calandrelli R, Rivas-Astroza M, Zhou S, Chen Z, Zhong S. PMID: 30267678.
View in: PubMed Mentions:
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GIVE: portable genome browsers for personal websites. Genome Biol. 2018 07 18; 19(1):92.
Cao X, Yan Z, Wu Q, Zheng A, Zhong S. PMID: 30016975.
View in: PubMed Mentions: 4 Fields: Translation: HumansCells
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RNAs as Proximity-Labeling Media for Identifying Nuclear Speckle Positions Relative to the Genome. iScience. 2018 Jun 29; 4:204-215.
Chen W, Yan Z, Li S, Huang N, Huang X, Zhang J, Zhong S. PMID: 30240742.
View in: PubMed Mentions:
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Trends in Cannabis Use Disorder among Pregnant Women in the U.S., 1993-2014. J Gen Intern Med. 2018 03; 33(3):245-246.
Shi Y, Zhong S. PMID: 29030807.
View in: PubMed Mentions: 3 Fields: Translation: Humans
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Pattern-based Search of Epigenomic Data Using GeNemo. J Vis Exp. 2017 10 08; (128).
Zheng A, Cao X, Zhong S. PMID: 29053670.
View in: PubMed Mentions: Fields: Translation: Humans
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SMARCAD1 Contributes to the Regulation of Naive Pluripotency by Interacting with Histone Citrullination. Cell Rep. 2017 03 28; 18(13):3117-3128.
Xiao S, Lu J, Sridhar B, Cao X, Yu P, Zhao T, Chen CC, McDee D, Sloofman L, Wang Y, Rivas-Astroza M, Telugu BPVL, Levasseur D, Zhang K, Liang H, Zhao JC, Tanaka TS, Stormo G, Zhong S. PMID: 28355564.
View in: PubMed Mentions: 13 Fields: Translation: AnimalsCells
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Systematic Mapping of RNA-Chromatin Interactions In Vivo. Curr Biol. 2017 Feb 20; 27(4):602-609.
Sridhar B, Rivas-Astroza M, Nguyen TC, Chen W, Yan Z, Cao X, Hebert L, Zhong S. PMID: 28132817.
View in: PubMed Mentions: 27 Fields: Translation: HumansAnimalsCells
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Mapping RNA-RNA interactome and RNA structure in vivo by MARIO. Nat Commun. 2016 06 24; 7:12023.
Nguyen TC, Cao X, Yu P, Xiao S, Lu J, Biase FH, Sridhar B, Huang N, Zhang K, Zhong S. PMID: 27338251.
View in: PubMed Mentions: 29 Fields: Translation: AnimalsCells
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GeNemo: a search engine for web-based functional genomic data. Nucleic Acids Res. 2016 07 08; 44(W1):W122-7.
Zhang Y, Cao X, Zhong S. PMID: 27098038.
View in: PubMed Mentions: 2 Fields: Translation: HumansAnimalsCells
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P16INK4a Upregulation Mediated by SIX6 Defines Retinal Ganglion Cell Pathogenesis in Glaucoma. Mol Cell. 2015 Sep 17; 59(6):931-40.
Skowronska-Krawczyk D, Zhao L, Zhu J, Weinreb RN, Cao G, Luo J, Flagg K, Patel S, Wen C, Krupa M, Luo H, Ouyang H, Lin D, Wang W, Li G, Xu Y, Li O, Chung C, Yeh E, Jafari M, Ai M, Zhong Z, Shi W, Zheng L, Krawczyk M, Chen D, Shi C, Zin C, Zhu J, Mellon PL, Gao W, Abagyan R, Zhang L, Sun X, Zhong S, Zhuo Y, Rosenfeld MG, Liu Y, Zhang K. PMID: 26365380.
View in: PubMed Mentions: 16 Fields: Translation: HumansAnimalsCells
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A comparative encyclopedia of DNA elements in the mouse genome. Nature. 2014 Nov 20; 515(7527):355-64.
Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, Rynes E, Kirilusha A, Marinov GK, Williams BA, Trout D, Amrhein H, Fisher-Aylor K, Antoshechkin I, DeSalvo G, See LH, Fastuca M, Drenkow J, Zaleski C, Dobin A, Prieto P, Lagarde J, Bussotti G, Tanzer A, Denas O, Li K, Bender MA, Zhang M, Byron R, Groudine MT, McCleary D, Pham L, Ye Z, Kuan S, Edsall L, Wu YC, Rasmussen MD, Bansal MS, Kellis M, Keller CA, Morrissey CS, Mishra T, Jain D, Dogan N, Harris RS, Cayting P, Kawli T, Boyle AP, Euskirchen G, Kundaje A, Lin S, Lin Y, Jansen C, Malladi VS, Cline MS, Erickson DT, Kirkup VM, Learned K, Sloan CA, Rosenbloom KR, Lacerda de Sousa B, Beal K, Pignatelli M, Flicek P, Lian J, Kahveci T, Lee D, Kent WJ, Ramalho Santos M, Herrero J, Notredame C, Johnson A, Vong S, Lee K, Bates D, Neri F, Diegel M, Canfield T, Sabo PJ, Wilken MS, Reh TA, Giste E, Shafer A, Kutyavin T, Haugen E, Dunn D, Reynolds AP, Neph S, Humbert R, Hansen RS, De Bruijn M, Selleri L, Rudensky A, Josefowicz S, Samstein R, Eichler EE, Orkin SH, Levasseur D, Papayannopoulou T, Chang KH, Skoultchi A, Gosh S, Disteche C, Treuting P, Wang Y, Weiss MJ, Blobel GA, Cao X, Zhong S, Wang T, Good PJ, Lowdon RF, Adams LB, Zhou XQ, Pazin MJ, Feingold EA, Wold B, Taylor J, Mortazavi A, Weissman SM, Stamatoyannopoulos JA, Snyder MP, Guigo R, Gingeras TR, Gilbert DM, Hardison RC, Beer MA, Ren B. PMID: 25409824.
View in: PubMed Mentions: 455 Fields: Translation: HumansAnimalsCells
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Cell fate inclination within 2-cell and 4-cell mouse embryos revealed by single-cell RNA sequencing. Genome Res. 2014 Nov; 24(11):1787-96.
Biase FH, Cao X, Zhong S. PMID: 25096407.
View in: PubMed Mentions: 52 Fields: Translation: AnimalsCells
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Comparative epigenomics: defining and utilizing epigenomic variations across species, time-course, and individuals. Wiley Interdiscip Rev Syst Biol Med. 2014 Sep-Oct; 6(5):345-52.
Xiao S, Cao X, Zhong S. PMID: 25044241.
View in: PubMed Mentions: 2 Fields: Translation: Humans
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From genomes to societies: a holistic view of determinants of human health. Curr Opin Biotechnol. 2014 Aug; 28:134-42.
Shi Y, Zhong S. PMID: 24686286.
View in: PubMed Mentions: Fields: Translation: Humans
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Enabling interspecies epigenomic comparison with CEpBrowser. Bioinformatics. 2013 May 01; 29(9):1223-5.
Cao X, Zhong S. PMID: 23543396.
View in: PubMed Mentions: 4 Fields: Translation: Animals
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Spatiotemporal clustering of the epigenome reveals rules of dynamic gene regulation. Genome Res. 2013 Feb; 23(2):352-64.
Yu P, Xiao S, Xin X, Song CX, Huang W, McDee D, Tanaka T, Wang T, He C, Zhong S. PMID: 23033340.
View in: PubMed Mentions: 32 Fields: Translation: AnimalsCells
This graph shows the total number of publications by year. To see the data as text, click here.
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Year | Publications |
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2012 | 1 | 2013 | 1 | 2014 | 4 | 2015 | 1 | 2016 | 2 | 2017 | 3 | 2018 | 7 | 2019 | 4 | 2020 | 3 |
This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
To see the data as text, click here.
This graph shows the number and percent of publications by field.
Fields are based on how the National Library of Medicine (NLM) classifies the publications' journals and might not represent the specific topics of the publications.
Note that an individual publication can be assigned to more than one field. As a result, the publication counts in this graph might add up to more than the number of publications the person has written.
To see the data as text, click here.
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