Varsha Badal

Title(s)Assistant Project Scientist, Psychiatry
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Evaluating natural language processing derived linguistic features associated with current suicidal ideation, past attempts, and future suicidal behavior. J Psychiatr Res. 2025 May 02; 187:25-33. McBride L, Badal VD, Harvey PD, Pinkham A, Aich A, Parde N, Depp C. PMID: 40334457.
      View in: PubMed   Mentions:    Fields:    
    2. Relationship of Perceived Burdensomeness and Thwarted Belongingness to Suicide Ideation Persistence and Suicide Behavior Over 12 Months in People With Serious Mental Illness. Schizophr Bull. 2025 Mar 14. Parrish EM, Kuehn K, Pinkham A, Moore RC, Harvey PD, Granholm E, Roesch S, Joiner T, Badal VD, Depp CA. PMID: 40084583.
      View in: PubMed   Mentions:    Fields:    
    3. Editorial for the special issue on "microbiomes in extremes of aging". Exp Gerontol. 2025 Jan; 199:112663. Yadav H, Badal VD, Masternak MM, Leeuwenburgh C. PMID: 39706502.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    4. Dynamic influence of mood on subjective cognitive complaints in mild cognitive impairment: A time series network analysis approach. Int Psychogeriatr. 2025 Mar; 37(2):100007. Badal VD, Campbell LM, Depp CA, Parrish EM, Ackerman RA, Moore RC, Harvey PD, Pinkham AE. PMID: 40086909; PMCID: PMC11909412.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    5. Using machine learning modeling to identify childhood abuse victims on the basis of personality inventory responses. J Psychiatr Res. 2024 Dec; 180:8-15. Sadeghpour A, Badal VD, Pogge DL, O'Donoghue E, Bigdeli T, Harvey PD. PMID: 39366273.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    6. Investigating Acoustic and Psycholinguistic Predictors of Cognitive Impairment in Older Adults: Modeling Study. JMIR Aging. 2024 Sep 16; 7:e54655. Badal VD, Reinen JM, Twamley EW, Lee EE, Fellows RP, Bilal E, Depp CA. PMID: 39283659; PMCID: PMC11443203.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    7. Decoding loneliness: Can explainable AI help in understanding language differences in lonely older adults? Psychiatry Res. 2024 Sep; 339:116078. Wang N, Goel S, Ibrahim S, Badal VD, Depp C, Bilal E, Subbalakshmi K, Lee E. PMID: 39003802; PMCID: PMC11457424.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    8. Comparisons of Self-Report With Objective Measurements Suggest Faster Responding but Little Change in Response Quality Over Time in Ecological Momentary Assessment Studies. Assessment. 2025 Apr; 32(3):335-355. Hernandez R, Schneider S, Pinkham AE, Depp CA, Ackerman R, Pyatak EA, Badal VD, Moore RC, Harvey PD, Funsch K, Stone AA. PMID: 38634454.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    9. A meta-cognitive Wisconsin Card Sorting Test in people with schizophrenia and bipolar disorder: Self-assessment of sorting performance. Psychiatry Res. 2024 Apr; 334:115831. Gorora ME, Dalkner N, Moore RC, Depp CA, Badal VD, Ackerman RA, Pinkham AE, Harvey PD. PMID: 38428288; PMCID: PMC10947823.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    10. Dynamics of task-based confidence in schizophrenia using seasonal decomposition approach. Schizophr Res Cogn. 2023 Jun; 32:100278. Badal VD, Depp CA, Pinkham AE, Harvey PD. PMID: 36718249; PMCID: PMC9883296.
      View in: PubMed   Mentions: 3  
    11. Childhood trauma and real-world social experiences in psychosis. Schizophr Res. 2023 02; 252:279-286. Steenkamp LR, Parrish EM, Chalker SA, Badal VD, Pinkham AE, Harvey PD, Depp CA. PMID: 36701936.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    12. Automated Analysis of Drawing Process to Estimate Global Cognition in Older Adults: Preliminary International Validation on the US and Japan Data Sets. JMIR Form Res. 2022 May 05; 6(5):e37014. Yamada Y, Shinkawa K, Kobayashi M, Badal VD, Glorioso D, Lee EE, Daly R, Nebeker C, Twamley EW, Depp C, Nemoto M, Nemoto K, Kim HC, Arai T, Jeste DV. PMID: 35511253; PMCID: PMC9121219.
      View in: PubMed   Mentions: 6  
    13. Confidence, accuracy judgments and feedback in schizophrenia and bipolar disorder: a time series network analysis. Psychol Med. 2023 07; 53(9):4200-4209. Badal VD, Depp CA, Harvey PD, Ackerman RA, Moore RC, Pinkham AE. PMID: 35478065.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    14. Natural language processing of medical records: new understanding of suicide ideation by dementia subtypes. Int Psychogeriatr. 2022 04; 34(4):319-321. Badal VD, Depp CA. PMID: 35538873.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    15. Dynamics of Loneliness Among Older Adults During the COVID-19 Pandemic: Pilot Study of Ecological Momentary Assessment With Network Analysis. Front Digit Health. 2022; 4:814179. Badal VD, Lee EE, Daly R, Parrish EM, Kim HC, Jeste DV, Depp CA. PMID: 35199099; PMCID: PMC8859335.
      View in: PubMed   Mentions: 5  
    16. Dynamic contextual influences on social motivation and behavior in schizophrenia: a case-control network analysis. NPJ Schizophr. 2021 Dec 09; 7(1):62. Badal VD, Parrish EM, Holden JL, Depp CA, Granholm E. PMID: 34887402; PMCID: PMC8660790.
      View in: PubMed   Mentions: 9  
    17. Do Words Matter? Detecting Social Isolation and Loneliness in Older Adults Using Natural Language Processing. Front Psychiatry. 2021; 12:728732. Badal VD, Nebeker C, Shinkawa K, Yamada Y, Rentscher KE, Kim HC, Lee EE. PMID: 34867518; PMCID: PMC8635064.
      View in: PubMed   Mentions: 10  
    18. Text mining for modeling of protein complexes enhanced by machine learning. Bioinformatics. 2021 05 01; 37(4):497-505. Badal VD, Kundrotas PJ, Vakser IA. PMID: 32960948; PMCID: PMC8088328.
      View in: PubMed   Mentions: 3     Fields:    
    19. Computational methods for integrative evaluation of confidence, accuracy, and reaction time in facial affect recognition in schizophrenia. Schizophr Res Cogn. 2021 Sep; 25:100196. Badal VD, Depp CA, Hitchcock PF, Penn DL, Harvey PD, Pinkham AE. PMID: 33996517; PMCID: PMC8093458.
      View in: PubMed   Mentions: 6  
    20. The Gut Microbiome, Aging, and Longevity: A Systematic Review. Nutrients. 2020 Dec 07; 12(12). Badal VD, Vaccariello ED, Murray ER, Yu KE, Knight R, Jeste DV, Nguyen TT. PMID: 33297486; PMCID: PMC7762384.
      View in: PubMed   Mentions: 189     Fields:    Translation:HumansCells
    21. Prediction of Loneliness in Older Adults Using Natural Language Processing: Exploring Sex Differences in Speech. Am J Geriatr Psychiatry. 2021 08; 29(8):853-866. Badal VD, Graham SA, Depp CA, Shinkawa K, Yamada Y, Palinkas LA, Kim HC, Jeste DV, Lee EE. PMID: 33039266; PMCID: PMC7486862.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    22. Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment. Proteins. 2019 12; 87(12):1200-1221. Lensink MF, Brysbaert G, Nadzirin N, Velankar S, Chaleil RAG, Gerguri T, Bates PA, Laine E, Carbone A, Grudinin S, Kong R, Liu RR, Xu XM, Shi H, Chang S, Eisenstein M, Karczynska A, Czaplewski C, Lubecka E, Lipska A, Krupa P, Mozolewska M, Golon L, Samsonov S, Liwo A, Crivelli S, Pagès G, Karasikov M, Kadukova M, Yan Y, Huang SY, Rosell M, Rodríguez-Lumbreras LA, Romero-Durana M, Díaz-Bueno L, Fernandez-Recio J, Christoffer C, Terashi G, Shin WH, Aderinwale T, Maddhuri Venkata Subraman SR, Kihara D, Kozakov D, Vajda S, Porter K, Padhorny D, Desta I, Beglov D, Ignatov M, Kotelnikov S, Moal IH, Ritchie DW, Chauvot de Beauchêne I, Maigret B, Devignes MD, Ruiz Echartea ME, Barradas-Bautista D, Cao Z, Cavallo L, Oliva R, Cao Y, Shen Y, Baek M, Park T, Woo H, Seok C, Braitbard M, Bitton L, Scheidman-Duhovny D, Dapkunas J, Olechnovic K, Venclovas C, Kundrotas PJ, Belkin S, Chakravarty D, Badal VD, Vakser IA, Vreven T, Vangaveti S, Borrman T, Weng Z, Guest JD, Gowthaman R, Pierce BG, Xu X, Duan R, Qiu L, Hou J, Ryan Merideth B, Ma Z, Cheng J, Zou X, Koukos PI, Roel-Touris J, Ambrosetti F, Geng C, Schaarschmidt J, Trellet ME, Melquiond ASJ, Xue L, Jiménez-García B, van Noort CW, Honorato RV, Bonvin AMJJ, Wodak SJ. PMID: 31612567; PMCID: PMC7274794.
      View in: PubMed   Mentions: 55     Fields:    
    23. Challenges in the construction of knowledge bases for human microbiome-disease associations. Microbiome. 2019 09 05; 7(1):129. Badal VD, Wright D, Katsis Y, Kim HC, Swafford AD, Knight R, Hsu CN. PMID: 31488215; PMCID: PMC6728997.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    24. Natural language processing in text mining for structural modeling of protein complexes. BMC Bioinformatics. 2018 03 05; 19(1):84. Badal VD, Kundrotas PJ, Vakser IA. PMID: 29506465; PMCID: PMC5838950.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    25. Modeling CAPRI targets 110-120 by template-based and free docking using contact potential and combined scoring function. Proteins. 2018 03; 86 Suppl 1:302-310. Kundrotas PJ, Anishchenko I, Badal VD, Das M, Dauzhenka T, Vakser IA. PMID: 28905425; PMCID: PMC5820180.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCells
    26. Text Mining for Protein Docking. PLoS Comput Biol. 2015 Dec; 11(12):e1004630. Badal VD, Kundrotas PJ, Vakser IA. PMID: 26650466; PMCID: PMC4674139.
      View in: PubMed   Mentions: 10     Fields:    
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