James Mcdonald

Title(s)Assistant Clinical Professor, Psychiatry
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Multi-scale influences on Escherichia coli concentrations in shellfish: From catchment to estuary. Environ Pollut. 2024 Dec 06; 366:125476. Malham SK, Taft H, Farkas K, Ladd CJT, Seymour M, Robins PE, Jones DL, McDonald JE, Le Vay L, Jones L. PMID: 39647770.
      View in: PubMed   Mentions:
    2. Investigating the impact of temperature on growth rate of the root rot fungus, Gymnopus fusipes. Access Microbiol. 2024; 6(6). Pettifor BJ, Kajamuhan A, Denman S, McDonald JE. PMID: 39045248; PMCID: PMC11261711.
      View in: PubMed   Mentions:
    3. Lutispora saccharofermentans sp. nov., a mesophilic, non-spore-forming bacterium isolated from a lab-scale methanogenic landfill bioreactor digesting anaerobic sludge, and emendation of the genus Lutispora to include species which are non-spore-forming and mesophilic. Int J Syst Evol Microbiol. 2023 Feb; 73(1). El Houari A, Carpenter M, Chaplin D, Golyshin P, McDonald JE. PMID: 36748601.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    4. Navigating barriers to antiracist supervision within the veterans affairs health care system: Reflections on 2020 and a call to action. Psychol Serv. 2023 May; 20(2):283-290. McDonald JE, Bohlig AJ, Engle JL. PMID: 36395059.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    5. RNA-viromics reveals diverse communities of soil RNA viruses with the potential to affect grassland ecosystems across multiple trophic levels. ISME Commun. 2022; 2:34. Hillary LS, Adriaenssens EM, Jones DL, McDonald JE. PMID: 36373138; PMCID: PMC8992426.
      View in: PubMed   Mentions: 20  
    6. A comparison of precipitation and filtration-based SARS-CoV-2 recovery methods and the influence of temperature, turbidity, and surfactant load in urban wastewater. Sci Total Environ. 2022 Feb 20; 808:151916. Kevill JL, Pellett C, Farkas K, Brown MR, Bassano I, Denise H, McDonald JE, Malham SK, Porter J, Warren J, Evens NP, Paterson S, Singer AC, Jones DL. PMID: 34826466; PMCID: PMC8610557.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansCellsPHPublic Health
    7. Correction: Farkas et al. Concentration and Quantification of SARS-CoV-2 RNA in Wastewater Using Polyethylene Glycol-Based Concentration and qRT-PCR. Methods Protoc. 2021, 4, 17. Methods Protoc. 2021 Nov 12; 4(4). Farkas K, Hillary LS, Thorpe J, Walker DI, Lowther JA, McDonald JE, Malham SK, Jones DL. PMID: 34842792; PMCID: PMC8628876.
      View in: PubMed   Mentions:
    8. Shifts in Soil Structure, Biological, and Functional Diversity Under Long-Term Carbon Deprivation. Front Microbiol. 2021; 12:735022. George PBL, Fidler DB, Van Nostrand JD, Atkinson JA, Mooney SJ, Creer S, Griffiths RI, McDonald JE, Robinson DA, Jones DL. PMID: 34594317; PMCID: PMC8477002.
      View in: PubMed   Mentions:
    9. Tracing the fate of wastewater viruses reveals catchment-scale virome diversity and connectivity. Water Res. 2021 Sep 15; 203:117568. Adriaenssens EM, Farkas K, McDonald JE, Jones DL, Allison HE, McCarthy AJ. PMID: 34450465.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCellsPHPublic Health
    10. Monitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK. Water Res. 2021 Jul 15; 200:117214. Hillary LS, Farkas K, Maher KH, Lucaci A, Thorpe J, Distaso MA, Gaze WH, Paterson S, Burke T, Connor TR, McDonald JE, Malham SK, Jones DL. PMID: 34058486; PMCID: PMC8105641.
      View in: PubMed   Mentions: 68     Fields:    Translation:HumansCellsPHPublic Health
    11. Concentration and Quantification of SARS-CoV-2 RNA in Wastewater Using Polyethylene Glycol-Based Concentration and qRT-PCR. Methods Protoc. 2021 Feb 23; 4(1). Farkas K, Hillary LS, Thorpe J, Walker DI, Lowther JA, McDonald JE, Malham SK, Jones DL. PMID: 33672247; PMCID: PMC8005995.
      View in: PubMed   Mentions: 32  
    12. E. coli Is a Poor End-Product Criterion for Assessing the General Microbial Risk Posed From Consuming Norovirus Contaminated Shellfish. Front Microbiol. 2021; 12:608888. Sharp JH, Clements K, Diggens M, McDonald JE, Malham SK, Jones DL. PMID: 33679634; PMCID: PMC7933002.
      View in: PubMed   Mentions: 4  
    13. Application of ecological and evolutionary theory to microbiome community dynamics across systems. Proc Biol Sci. 2020 12 23; 287(1941):20202886. McDonald JE, Marchesi JR, Koskella B. PMID: 33352082; PMCID: PMC7779500.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimals
    14. Impact of Sediment Concentration on the Survival of Wastewater-Derived blaCTX-M-15-Producing E. coli, and the Implications for Dispersal into Estuarine Waters. Int J Environ Res Public Health. 2020 10 19; 17(20). Bashawri YM, Robins P, Cooper DM, McDonald JE, Jones DL, Williams AP. PMID: 33086623; PMCID: PMC7589618.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    15. Host-microbiota-insect interactions drive emergent virulence in a complex tree disease. Proc Biol Sci. 2020 08 26; 287(1933):20200956. Doonan JM, Broberg M, Denman S, McDonald JE. PMID: 32811286; PMCID: PMC7482278.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    16. A Large-Class Undergraduate Microbiology Laboratory Activity on Microbial Diversity and Antimicrobial Resistance. J Microbiol Biol Educ. 2020; 21(2). Farkas K, McDonald JE. PMID: 32742548; PMCID: PMC7386325.
      View in: PubMed   Mentions:
    17. Shedding of SARS-CoV-2 in feces and urine and its potential role in person-to-person transmission and the environment-based spread of COVID-19. Sci Total Environ. 2020 Dec 20; 749:141364. Jones DL, Baluja MQ, Graham DW, Corbishley A, McDonald JE, Malham SK, Hillary LS, Connor TR, Gaze WH, Moura IB, Wilcox MH, Farkas K. PMID: 32836117; PMCID: PMC7836549.
      View in: PubMed   Mentions: 186     Fields:    Translation:HumansCells
    18. Wastewater and public health: the potential of wastewater surveillance for monitoring COVID-19. Curr Opin Environ Sci Health. 2020 Oct; 17:14-20. Farkas K, Hillary LS, Malham SK, McDonald JE, Jones DL. PMID: 32835157; PMCID: PMC7291992.
      View in: PubMed   Mentions: 86  
    19. Viral indicators for tracking domestic wastewater contamination in the aquatic environment. Water Res. 2020 Aug 15; 181:115926. Farkas K, Walker DI, Adriaenssens EM, McDonald JE, Hillary LS, Malham SK, Jones DL. PMID: 32417460; PMCID: PMC7211501.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansCellsPHPublic Health
    20. Survival of Brenneria goodwinii and Gibbsiella quercinecans, associated with acute oak decline, in rainwater and forest soil. Syst Appl Microbiol. 2020 Mar; 43(2):126052. Pettifor BJ, Doonan J, Denman S, McDonald JE. PMID: 31932140.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCellsPHPublic Health
    21. Critical Evaluation of CrAssphage as a Molecular Marker for Human-Derived Wastewater Contamination in the Aquatic Environment. Food Environ Virol. 2019 06; 11(2):113-119. Farkas K, Adriaenssens EM, Walker DI, McDonald JE, Malham SK, Jones DL. PMID: 30758724; PMCID: PMC6513805.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    22. Extraction of Microbial and Host DNA, RNA, and Proteins from Oak Bark Tissue. Methods Protoc. 2019 Feb 05; 2(1). Broberg M, McDonald JE. PMID: 31164597; PMCID: PMC6481080.
      View in: PubMed   Mentions: 1  
    23. Genomic analysis of bacteria in the Acute Oak Decline pathobiome. Microb Genom. 2019 01; 5(1). Doonan J, Denman S, Pachebat JA, McDonald JE. PMID: 30625111; PMCID: PMC6412055.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    24. Seasonal and diurnal surveillance of treated and untreated wastewater for human enteric viruses. Environ Sci Pollut Res Int. 2018 Nov; 25(33):33391-33401. Farkas K, Marshall M, Cooper D, McDonald JE, Malham SK, Peters DE, Maloney JD, Jones DL. PMID: 30259243; PMCID: PMC6245017.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansCellsPHPublic Health
    25. Two-Step Concentration of Complex Water Samples for the Detection of Viruses. Methods Protoc. 2018 Sep 10; 1(3). Farkas K, McDonald JE, Malham SK, Jones DL. PMID: 31164575; PMCID: PMC6481077.
      View in: PubMed   Mentions: 13  
    26. The presence of large focal lesions is a strong independent prognostic factor in multiple myeloma. Blood. 2018 07 05; 132(1):59-66. Rasche L, Angtuaco EJ, Alpe TL, Gershner GH, McDonald JE, Samant RS, Kumar M, Van Hemert R, Epstein J, Deshpande S, Tytarenko R, Yaccoby S, Hillengass J, Thanendrarajan S, Schinke C, van Rhee F, Zangari M, Walker BA, Barlogie B, Morgan GJ, Davies FE, Weinhold N. PMID: 29784643; PMCID: PMC6034645.
      View in: PubMed   Mentions: 52     Fields:    Translation:HumansCTClinical Trials
    27. Seasonal and spatial dynamics of enteric viruses in wastewater and in riverine and estuarine receiving waters. Sci Total Environ. 2018 Sep 01; 634:1174-1183. Farkas K, Cooper DM, McDonald JE, Malham SK, de Rougemont A, Jones DL. PMID: 29710623.
      View in: PubMed   Mentions: 61     Fields:    Translation:PHPublic Health
    28. Treatment to suppression of focal lesions on positron emission tomography-computed tomography is a therapeutic goal in newly diagnosed multiple myeloma. Haematologica. 2018 06; 103(6):1047-1053. Davies FE, Rosenthal A, Rasche L, Petty NM, McDonald JE, Ntambi JA, Steward DM, Panozzo SB, van Rhee F, Zangari M, Schinke CD, Thanendrarajan S, Walker B, Weinhold N, Barlogie B, Hoering A, Morgan GJ. PMID: 29567784; PMCID: PMC6058800.
      View in: PubMed   Mentions: 33     Fields:    Translation:Humans
    29. Integrated multi-omic analysis of host-microbiota interactions in acute oak decline. Microbiome. 2018 01 30; 6(1):21. Broberg M, Doonan J, Mundt F, Denman S, McDonald JE. PMID: 29378627; PMCID: PMC5789699.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    30. Physicochemical Factors Influence the Abundance and Culturability of Human Enteric Pathogens and Fecal Indicator Organisms in Estuarine Water and Sediment. Front Microbiol. 2017; 8:1996. Hassard F, Andrews A, Jones DL, Parsons L, Jones V, Cox BA, Daldorph P, Brett H, McDonald JE, Malham SK. PMID: 29089931; PMCID: PMC5650961.
      View in: PubMed   Mentions: 8  
    31. Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline. ISME J. 2018 02; 12(2):386-399. Denman S, Doonan J, Ransom-Jones E, Broberg M, Plummer S, Kirk S, Scarlett K, Griffiths AR, Kaczmarek M, Forster J, Peace A, Golyshin PN, Hassard F, Brown N, Kenny JG, McDonald JE. PMID: 29028005; PMCID: PMC5776452.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    32. Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems. Sci Rep. 2017 09 12; 7(1):11314. Potter C, Freeman C, Golyshin PN, Ackermann G, Fenner N, McDonald JE, Ehbair A, Jones TG, Murphy LM, Creer S. PMID: 28900257; PMCID: PMC5595961.
      View in: PubMed   Mentions: 11     Fields:    Translation:PHPublic Health
    33. Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass-Degrading Diversity. mSphere. 2017 Jul-Aug; 2(4). Ransom-Jones E, McCarthy AJ, Haldenby S, Doonan J, McDonald JE. PMID: 28776044; PMCID: PMC5541161.
      View in: PubMed   Mentions: 18     Fields:    
    34. Multilocus sequence typing provides insights into the population structure and evolutionary potential of Brenneria goodwinii, associated with acute oak decline. PLoS One. 2017; 12(6):e0178390. Kaczmarek M, Mullett MS, McDonald JE, Denman S. PMID: 28570630; PMCID: PMC5453491.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    35. Fifty important research questions in microbial ecology. FEMS Microbiol Ecol. 2017 05 01; 93(5). Antwis RE, Griffiths SM, Harrison XA, Aranega-Bou P, Arce A, Bettridge AS, Brailsford FL, de Menezes A, Devaynes A, Forbes KM, Fry EL, Goodhead I, Haskell E, Heys C, James C, Johnston SR, Lewis GR, Lewis Z, Macey MC, McCarthy A, McDonald JE, Mejia-Florez NL, O'Brien D, Orland C, Pautasso M, Reid WDK, Robinson HA, Wilson K, Sutherland WJ. PMID: 28379446.
      View in: PubMed   Mentions: 58     Fields:    Translation:HumansCellsPHPublic Health
    36. Low expression of hexokinase-2 is associated with false-negative FDG-positron emission tomography in multiple myeloma. Blood. 2017 07 06; 130(1):30-34. Rasche L, Angtuaco E, McDonald JE, Buros A, Stein C, Pawlyn C, Thanendrarajan S, Schinke C, Samant R, Yaccoby S, Walker BA, Epstein J, Zangari M, van Rhee F, Meissner T, Goldschmidt H, Hemminki K, Houlston R, Barlogie B, Davies FE, Morgan GJ, Weinhold N. PMID: 28432222; PMCID: PMC5501152.
      View in: PubMed   Mentions: 115     Fields:    Translation:Humans
    37. Evaluation of Two Triplex One-Step qRT-PCR Assays for the Quantification of Human Enteric Viruses in Environmental Samples. Food Environ Virol. 2017 09; 9(3):342-349. Farkas K, Peters DE, McDonald JE, de Rougemont A, Malham SK, Jones DL. PMID: 28391510; PMCID: PMC5548846.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCellsPHPublic Health
    38. Regarding Harolds et al, "Recruitment into a Combined Radiology/Nuclear Medicine Subspecialty". J Am Coll Radiol. 2017 04; 14(4):450-451. McDonald JE, Bezold SL, Deloney LA, Jambhekar K. PMID: 28259498.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    39. Critical Review on the Public Health Impact of Norovirus Contamination in Shellfish and the Environment: A UK Perspective. Food Environ Virol. 2017 06; 9(2):123-141. Hassard F, Sharp JH, Taft H, LeVay L, Harris JP, McDonald JE, Tuson K, Wilson J, Jones DL, Malham SK. PMID: 28176295; PMCID: PMC5429388.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    40. Evaluation of Molecular Methods for the Detection and Quantification of Pathogen-Derived Nucleic Acids in Sediment. Front Microbiol. 2017; 8:53. Farkas K, Hassard F, McDonald JE, Malham SK, Jones DL. PMID: 28174565; PMCID: PMC5258707.
      View in: PubMed   Mentions: 15  
    41. Shotgun Metagenomic Sequencing Analysis of Soft-Rot Enterobacteriaceae in Polymicrobial Communities. Methods Mol Biol. 2017; 1539:85-97. Doonan J, Denman S, McDonald JE, Golyshin PN. PMID: 27900686.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    42. Abundance and Distribution of Enteric Bacteria and Viruses in Coastal and Estuarine Sediments-a Review. Front Microbiol. 2016; 7:1692. Hassard F, Gwyther CL, Farkas K, Andrews A, Jones V, Cox B, Brett H, Jones DL, McDonald JE, Malham SK. PMID: 27847499; PMCID: PMC5088438.
      View in: PubMed   Mentions: 26  
    43. Assessment of Total Lesion Glycolysis by 18F FDG PET/CT Significantly Improves Prognostic Value of GEP and ISS in Myeloma. Clin Cancer Res. 2017 04 15; 23(8):1981-1987. McDonald JE, Kessler MM, Gardner MW, Buros AF, Ntambi JA, Waheed S, van Rhee F, Zangari M, Heuck CJ, Petty N, Schinke C, Thanendrarajan S, Mitchell A, Hoering A, Barlogie B, Morgan GJ, Davies FE. PMID: 27698001; PMCID: PMC5777601.
      View in: PubMed   Mentions: 61     Fields:    Translation:HumansCells
    44. Draft Genome Sequence of Clostridium sp. Strain W14A Isolated from a Cellulose-Degrading Biofilm in a Landfill Leachate Microcosm. Genome Announc. 2016 Sep 22; 4(5). Ransom-Jones E, McDonald JE. PMID: 27660778; PMCID: PMC5034129.
      View in: PubMed   Mentions: 2  
    45. Use of Mytilus edulis biosentinels to investigate spatial patterns of norovirus and faecal indicator organism contamination around coastal sewage discharges. Water Res. 2016 Nov 15; 105:241-250. Winterbourn JB, Clements K, Lowther JA, Malham SK, McDonald JE, Jones DL. PMID: 27619500.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    46. Isolation studies reveal a shift in the cultivable microbiome of oak affected with Acute Oak Decline. Syst Appl Microbiol. 2016 Oct; 39(7):484-490. Denman S, Plummer S, Kirk S, Peace A, McDonald JE. PMID: 27553488.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    47. Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules. PLoS One. 2016; 11(6):e0157046. McDonald JE, Larsen N, Pennington A, Connolly J, Wallis C, Rooks DJ, Hall N, McCarthy AJ, Allison HE. PMID: 27276347; PMCID: PMC4898712.
      View in: PubMed   Mentions: 25     Fields:    Translation:AnimalsCells
    48. Spatial patterns and environmental constraints on ecosystem services at a catchment scale. Sci Total Environ. 2016 Dec 01; 572:1586-1600. Emmett BA, Cooper D, Smart S, Jackson B, Thomas A, Cosby B, Evans C, Glanville H, McDonald JE, Malham SK, Marshall M, Jarvis S, Rajko-Nenow P, Webb GP, Ward S, Rowe E, Jones L, Vanbergen AJ, Keith A, Carter H, Pereira MG, Hughes S, Lebron I, Wade A, Jones DL. PMID: 27156120.
      View in: PubMed   Mentions: 7     Fields:    
    49. Decay rates of faecal indicator bacteria from sewage and ovine faeces in brackish and freshwater microcosms with contrasting suspended particulate matter concentrations. Sci Total Environ. 2016 Dec 01; 572:1645-1652. Perkins TL, Perrow K, Rajko-Nenow P, Jago CF, Jones DL, Malham SK, McDonald JE. PMID: 27039273.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimalsCells
    50. 111In-Pentetreotide Imaging in Diffuse Idiopathic Neuroendocrine Hyperplasia of the Lung. Clin Nucl Med. 2016 Mar; 41(3):239-40. Kuruva M, Shah HR, Dunn AL, McDonald JE. PMID: 26595338.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    51. Lessons Learned Establishing a Radiology Resident Education Fund. J Am Coll Radiol. 2016 Feb; 13(2):196-7. Jambhekar K, McDonald JE, Braswell LE, Deloney LA. PMID: 26395647.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    52. A Unique Case of Diffuse Metastatic Neuroendocrine Cancer with Subcutaneous Nodules on (18)F-Fluorodeoxyglucose Positron Emission Tomography/Computer Assisted Tomography. World J Nucl Med. 2015 May-Aug; 14(2):134-6. Johnston MJ, Sachedina A, McDonald JE. PMID: 26097426; PMCID: PMC4455171.
      View in: PubMed   Mentions:
    53. Using chemical, microbial and fluorescence techniques to understand contaminant sources and pathways to wetlands in a conservation site. Sci Total Environ. 2015 Apr 01; 511:703-10. Rhymes J, Jones L, Lapworth DJ, White D, Fenner N, McDonald JE, Perkins TL. PMID: 25616189.
      View in: PubMed   Mentions: 1     Fields:    Translation:CellsPHPublic Health
    54. The intergenic transcribed spacer region 1 as a molecular marker for identification and discrimination of Enterobacteriaceae associated with acute oak decline. J Appl Microbiol. 2015 Jan; 118(1):193-201. Doonan J, Denman S, Gertler C, Pachebat JA, Golyshin PN, McDonald JE. PMID: 25355271.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    55. Sediment composition influences spatial variation in the abundance of human pathogen indicator bacteria within an estuarine environment. PLoS One. 2014; 9(11):e112951. Perkins TL, Clements K, Baas JH, Jago CF, Jones DL, Malham SK, McDonald JE. PMID: 25397595; PMCID: PMC4232572.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCellsPHPublic Health
    56. Pulmonary arterial hypertension: Part 1: A review for an internist. J Ark Med Soc. 2014 Sep; 111(4):62-4. McDonald JE, Deloney LA, Jambhekar K. PMID: 25255688.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    57. Integrated residency training leading to radiology and nuclear medicine board certification: the Arkansas experience. J Ark Med Soc. 2014 Aug; 111(2):38-9. McDonald JE, Deloney LA, Jambhekar K. PMID: 25174156.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    58. The interaction of human microbial pathogens, particulate material and nutrients in estuarine environments and their impacts on recreational and shellfish waters. Environ Sci Process Impacts. 2014 Sep 20; 16(9):2145-55. Malham SK, Rajko-Nenow P, Howlett E, Tuson KE, Perkins TL, Pallett DW, Wang H, Jago CF, Jones DL, McDonald JE. PMID: 25043898.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCellsPHPublic Health
    59. Distribution and diversity of members of the bacterial phylum Fibrobacteres in environments where cellulose degradation occurs. Syst Appl Microbiol. 2014 Oct; 37(7):502-9. Ransom-Jones E, Jones DL, Edwards A, McDonald JE. PMID: 25154048.
      View in: PubMed   Mentions: 12     Fields:    Translation:CellsPHPublic Health
    60. Radiation safety concerns and clinical decision support in computed tomography. J Ark Med Soc. 2014 Jun; 110(13):276-7. McDonald JE, Nelsen DA. PMID: 25004667.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    61. Adapting ACGME-Accredited Training to Meet Changing Demands of the Workforce: The NuRad Pathway. J Grad Med Educ. 2014 Jun; 6(2):372-3. McDonald JE, Deloney LA, Jambhekar K. PMID: 24949162; PMCID: PMC4054757.
      View in: PubMed   Mentions:    Fields:    
    62. Grover disease (transient acantholytic dermatosis) in acute myeloid leukemia on FDG PET/CT. Clin Nucl Med. 2014 Feb; 39(2):e173-5. Zhu HJ, Clark LN, Deloney LA, McDonald JE. PMID: 24152615.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    63. Server-based enterprise collaboration software improves safety and quality in high-volume PET/CT practice. J Nucl Med Technol. 2013 Dec; 41(4):289-91. McDonald JE, Kessler MM, Hightower JL, Henry SD, Deloney LA. PMID: 24159008.
      View in: PubMed   Mentions:    Fields:    
    64. Re: "Appropriate responsibilities and actions of radiologists in radiologic accidents and crises". J Am Coll Radiol. 2013 Aug; 10(8):640. Kessler MM, Johnston M, McDonald JE. PMID: 23796474.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    65. Bioreduction of sheep carcasses effectively contains and reduces pathogen levels under operational and simulated breakdown conditions. Environ Sci Technol. 2013 May 21; 47(10):5267-75. Gwyther CL, Jones DL, Golyshin PN, Edwards-Jones G, McKillen J, McNair I, McDonald JE, Williams AP. PMID: 23590844.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCellsPHPublic Health
    66. Prevalence of drug-resistant HIV type 1 at the time of initiation of antiretroviral therapy in Portland, Oregon. AIDS Res Hum Retroviruses. 2013 Feb; 29(2):337-42. MacVeigh MS, Kosmetatos MK, McDonald JE, Reeder JL, Parrish DA, Young TP. PMID: 22697610.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    67. A new system, the LipiFlow, for the treatment of meibomian gland dysfunction. Cornea. 2012 Apr; 31(4):396-404. Lane SS, DuBiner HB, Epstein RJ, Ernest PH, Greiner JV, Hardten DR, Holland EJ, Lemp MA, McDonald JE, Silbert DI, Blackie CA, Stevens CA, Bedi R. PMID: 22222996.
      View in: PubMed   Mentions: 91     Fields:    Translation:Humans
    68. Importance of Micromonospora spp. as colonizers of cellulose in freshwater lakes as demonstrated by quantitative reverse transcriptase PCR of 16S rRNA. Appl Environ Microbiol. 2012 May; 78(9):3495-9. de Menezes AB, McDonald JE, Allison HE, McCarthy AJ. PMID: 22389367; PMCID: PMC3346464.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    69. The microbial ecology of anaerobic cellulose degradation in municipal waste landfill sites: evidence of a role for fibrobacters. Environ Microbiol. 2012 Apr; 14(4):1077-87. McDonald JE, Houghton JN, Rooks DJ, Allison HE, McCarthy AJ. PMID: 22225785.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCellsPHPublic Health
    70. The Fibrobacteres: an important phylum of cellulose-degrading bacteria. Microb Ecol. 2012 Feb; 63(2):267-81. Ransom-Jones E, Jones DL, McCarthy AJ, McDonald JE. PMID: 22213055.
      View in: PubMed   Mentions: 127     Fields:    Translation:AnimalsCellsPHPublic Health
    71. Methods for the isolation of cellulose-degrading microorganisms. Methods Enzymol. 2012; 510:349-74. McDonald JE, Rooks DJ, McCarthy AJ. PMID: 22608736.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    72. Metagenomic approaches to the discovery of cellulases. Methods Enzymol. 2012; 510:375-94. Rooks DJ, McDonald JE, McCarthy AJ. PMID: 22608737.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    73. Identification of carbohydrate metabolism genes in the metagenome of a marine biofilm community shown to be dominated by gammaproteobacteria and bacteroidetes. Genes (Basel). 2010 Oct 26; 1(3):371-84. Edwards JL, Smith DL, Connolly J, McDonald JE, Cox MJ, Joint I, Edwards C, McCarthy AJ. PMID: 24710093; PMCID: PMC3966224.
      View in: PubMed   Mentions: 31     Fields:    
    74. 454-pyrosequencing: a molecular battiscope for freshwater viral ecology. Genes (Basel). 2010 Jul 21; 1(2):210-26. Rooks DJ, Smith DL, McDonald JE, Woodward MJ, McCarthy AJ, Allison HE. PMID: 24710042; PMCID: PMC3954088.
      View in: PubMed   Mentions: 6     Fields:    
    75. Development and validation of a qPCR-based method for quantifying Shiga toxin-encoding and other lambdoid bacteriophages. Environ Microbiol. 2010 May; 12(5):1194-204. Rooks DJ, Yan Y, McDonald JE, Woodward MJ, McCarthy AJ, Allison HE. PMID: 20148931.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    76. High-throughput method for rapid induction of prophages from lysogens and its application in the study of Shiga Toxin-encoding Escherichia coli strains. Appl Environ Microbiol. 2010 Apr; 76(7):2360-5. McDonald JE, Smith DL, Fogg PC, McCarthy AJ, Allison HE. PMID: 20139312; PMCID: PMC2849228.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    77. Composition of the landfill microbial community as determined by application of domain- and group-specific 16S and 18S rRNA-targeted oligonucleotide probes. Appl Environ Microbiol. 2010 Feb; 76(4):1301-6. McDonald JE, Allison HE, McCarthy AJ. PMID: 20023104; PMCID: PMC2820961.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCellsPHPublic Health
    78. A new interocular suppression technique for measuring sensory eye dominance. Invest Ophthalmol Vis Sci. 2010 Jan; 51(1):588-93. Yang E, Blake R, McDonald JE. PMID: 19628736; PMCID: PMC2810859.
      View in: PubMed   Mentions: 33     Fields:    Translation:Humans
    79. Molecular biological detection and quantification of novel Fibrobacter populations in freshwater lakes. Appl Environ Microbiol. 2009 Aug; 75(15):5148-52. McDonald JE, de Menezes AB, Allison HE, McCarthy AJ. PMID: 19502438; PMCID: PMC2725500.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCellsPHPublic Health
    80. Detection of novel Fibrobacter populations in landfill sites and determination of their relative abundance via quantitative PCR. Environ Microbiol. 2008 May; 10(5):1310-9. McDonald JE, Lockhart RJ, Cox MJ, Allison HE, McCarthy AJ. PMID: 18266756.
      View in: PubMed   Mentions: 7     Fields:    Translation:CellsPHPublic Health
    81. Contact lens assisted pharmacologically induced keratoshaping. Eye Contact Lens. 2004 Jul; 30(3):122-6. McDonald JE, Mertins A, Deitz D. PMID: 15499230.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    82. Removal of Intacs with a fractured positioning hole. J Refract Surg. 2004 Mar-Apr; 20(2):182-3. McDonald JE, Deitz DJ. PMID: 15072320.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    83. Positron emission tomography. The St. Vincent experience. J Ark Med Soc. 2003 Jun; 99(12):391-4. Harris WT, Prather JL, McDonald JE, Goad K, Goad M, Holman K. PMID: 12817517.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    84. Two-year outcomes of intrastromal corneal ring segments for the correction of myopia. Ophthalmology. 2001 Sep; 108(9):1688-94. Schanzlin DJ, Abbott RL, Asbell PA, Assil KK, Burris TE, Durrie DS, Fouraker BD, Lindstrom RL, McDonald JE, Verity SM, Waring GO. PMID: 11535474.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansCTClinical Trials
    85. Effect of brimonidine tartrate ophthalmic solution 0.2% on pupil size in normal eyes under different luminance conditions. J Cataract Refract Surg. 2001 Apr; 27(4):560-4. McDonald JE, El-Moatassem Kotb AM, Decker BB. PMID: 11311624.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    86. Aid for keratoconus patient. J Cataract Refract Surg. 2001 Mar; 27(3):341. McDonald JE. PMID: 11322136.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    87. Breast cancer metastatic to the lung. J Ark Med Soc. 1990 Jan; 86(8):320-1. Amir J, Atkinson WE, McDonald JE, Langston HD, Farley H. PMID: 2154444.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    88. Carcinoma of lung with mediastinal metastasis. J Ark Med Soc. 1986 Sep; 83(4):184-5. Araoz CA, Landgren RC, Lincoln BM, McDonald JE, Ross SW. PMID: 2944879.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    89. Detection of breast cancer in the asymptomatic woman. J Ark Med Soc. 1984 Mar; 80(10):441-3. McDonald JE. PMID: 6232254.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    90. Tear duct obstruction in the infant--a practical approach to diagnosis and therapy. J Ark Med Soc. 1974 Jan; 70(8):264-5. McDonald JE. PMID: 4275902.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
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