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James Mcdonald

Title(s)Assistant Clinical Professor, Psychiatry
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Chemical cues from Agrilus biguttatus beetle larvae trigger proliferation and putative virulence gene expression of the tree pathogen Brenneria goodwinii. J Appl Microbiol. 2026 Apr 02; 137(4). Cambon MC, Thomas G, Caulfield J, Crampton M, Reed K, Doonan JM, Hussain U, Denman S, Vuts J, McDonald JE. PMID: 41830917.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    2. Microbial communities in semi-mature oak trees are resilient to drought, nutrient limitation, and pathogen challenge. Cell Host Microbe. 2026 Feb 11; 34(2):344-358.e5. Hussain U, Cambon MC, Crampton B, Subramaniam S, Kajamuhan A, Ordoñez A, Downie J, Finch J, Beckmann M, Brown N, Elison A, Brady C, Vanguelova E, Denman S, McDonald JE. PMID: 41679285.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    3. Soil microbial adaptation to carbon deprivation: shifts in lignocellulolytic gene profiles following long-term plant exclusion. Environ Microbiome. 2025 Dec 10; 21(1):9. Fidler DB, George PBL, Le Brun LJ, Griffiths RI, Jones DL, McDonald JE. PMID: 41373036; PMCID: PMC12802329.
      View in: PubMed   Mentions:
    4. Anaerozeibacter quisquiliarum gen. nov., sp. nov., a novel mesophilic bacterium isolated from a laboratory-scale methanogenic landfill bioreactor digesting maize, and proposal of Anaerozeibacteraceae fam. nov., representing a new family within the order Eubacteriales. Int J Syst Evol Microbiol. 2025 Dec; 75(12). El Houari A, Carpenter M, Chaplin D, Golyshin P, McDonald JE. PMID: 41369690; PMCID: PMC12694931.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsPHPublic Health
    5. The role of volatile cues in mediating tree host-bacteria-insect interactions in acute oak decline. Curr Biol. 2025 Dec 01; 35(23):5831-5839.e7. Thomas GA, Caulfield JC, Songara P, Richardson M, Crampton B, Crampton M, Sarria A, Brady C, Apangu GP, Powers SJ, Hughes D, Brown N, Imrei Z, Withall DM, Birkett MA, McDonald JE, Denman S, Vuts J. PMID: 41237771.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    6. Residual PTSD and depression symptoms among veterans receiving prolonged exposure therapy with and without topiramate. Psychol Trauma. 2025 Nov 13. Klein AB, Hicks TA, Park J, McDonald JE, Luciano MT, Panza KE, Schnurr PP, Anthenelli RM, Angkaw AC, Brody AL, Davis BC, Martis B, Norman SB. PMID: 41231593; PMCID: PMC12617316.
      View in: PubMed   Mentions:    Fields:    
    7. Synthetic microbial communities for studying and engineering the tree microbiome: challenges and opportunities. Curr Opin Microbiol. 2025 Sep; 87:102636. Cambon MC, Xu X, Kovács ÁT, Gomes SI, McDonald JE. PMID: 40701110.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    8. Responses of an Old Deciduous Forest Ecosystem to Elevated CO2. Glob Chang Biol. 2025 Jul; 31(7):e70355. Foyer CH, Gardner A, Hayward SAL, Sanchez-Lucas R, Luna E, McDonald JE, Rumeau M, Hart K, Norby RJ, Mayoral C, Gauci V, Smith A, Hartley IP, Crowley LM, Sadler JP, Ullah S, MacKenzie AR. PMID: 40682342.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    9. Representatives of the Synergistaceae family, taxonomic description and genome sequence of Caenicola nitritireducens gen nov., sp. nov., a novel fermenting and amino-acid degrading bacterium isolated from a municipal anaerobic digester sludge. Syst Appl Microbiol. 2025 May; 48(3):126607. El Houari A, Ranchou-Peyruse M, Carlier E, Ranchou-Peyruse A, Hirschler-Réa A, Bennisse R, Bouterfas R, McDonald JE, Guyoneaud R, Qatibi AI. PMID: 40288042.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    10. Evaluating agar-plating and dilution-to-extinction isolation methods for generating oak-associated microbial culture collections. ISME Commun. 2025 Jan; 5(1):ycaf019. Ordonez A, Hussain U, Cambon MC, Golyshin PN, Downie J, McDonald JE. PMID: 40041709; PMCID: PMC11878766.
      View in: PubMed   Mentions: 4  
    11. Taxonomic description and genome sequence of Anaerorudis cellulosivorans gen. Nov. sp. nov., a novel cellulose- and Xylan-degrading bacterium of the Bacteroidota phylum isolated from a lab-scale methanogenic landfill bioreactor digesting municipal solid waste. Syst Appl Microbiol. 2025 Mar; 48(2):126590. El Houari A, Carpenter M, Chaplin D, Golyshin P, McDonald JE. PMID: 39954481.
      View in: PubMed   Mentions: 3     Fields:    Translation:CellsPHPublic Health
    12. Multi-scale influences on Escherichia coli concentrations in shellfish: From catchment to estuary. Environ Pollut. 2025 Feb 01; 366:125476. Malham SK, Taft H, Farkas K, Ladd CJT, Seymour M, Robins PE, Jones DL, McDonald JE, Le Vay L, Jones L. PMID: 39647770.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCellsPHPublic Health
    13. Investigating the impact of temperature on growth rate of the root rot fungus, Gymnopus fusipes. Access Microbiol. 2024; 6(6). Pettifor BJ, Kajamuhan A, Denman S, McDonald JE. PMID: 39045248; PMCID: PMC11261711.
      View in: PubMed   Mentions:
    14. Lutispora saccharofermentans sp. nov., a mesophilic, non-spore-forming bacterium isolated from a lab-scale methanogenic landfill bioreactor digesting anaerobic sludge, and emendation of the genus Lutispora to include species which are non-spore-forming and mesophilic. Int J Syst Evol Microbiol. 2023 Feb; 73(1). El Houari A, Carpenter M, Chaplin D, Golyshin P, McDonald JE. PMID: 36748601.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    15. Navigating barriers to antiracist supervision within the veterans affairs health care system: Reflections on 2020 and a call to action. Psychol Serv. 2023 May; 20(2):283-290. McDonald JE, Bohlig AJ, Engle JL. PMID: 36395059.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
    16. RNA-viromics reveals diverse communities of soil RNA viruses with the potential to affect grassland ecosystems across multiple trophic levels. ISME Commun. 2022; 2:34. Hillary LS, Adriaenssens EM, Jones DL, McDonald JE. PMID: 36373138; PMCID: PMC8992426.
      View in: PubMed   Mentions: 29  
    17. A comparison of precipitation and filtration-based SARS-CoV-2 recovery methods and the influence of temperature, turbidity, and surfactant load in urban wastewater. Sci Total Environ. 2022 Feb 20; 808:151916. Kevill JL, Pellett C, Farkas K, Brown MR, Bassano I, Denise H, McDonald JE, Malham SK, Porter J, Warren J, Evens NP, Paterson S, Singer AC, Jones DL. PMID: 34826466; PMCID: PMC8610557.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansCellsPHPublic Health
    18. Correction: Farkas et al. Concentration and Quantification of SARS-CoV-2 RNA in Wastewater Using Polyethylene Glycol-Based Concentration and qRT-PCR. Methods Protoc. 2021, 4, 17. Methods Protoc. 2021 Nov 12; 4(4). Farkas K, Hillary LS, Thorpe J, Walker DI, Lowther JA, McDonald JE, Malham SK, Jones DL. PMID: 34842792; PMCID: PMC8628876.
      View in: PubMed   Mentions:
    19. Shifts in Soil Structure, Biological, and Functional Diversity Under Long-Term Carbon Deprivation. Front Microbiol. 2021; 12:735022. George PBL, Fidler DB, Van Nostrand JD, Atkinson JA, Mooney SJ, Creer S, Griffiths RI, McDonald JE, Robinson DA, Jones DL. PMID: 34594317; PMCID: PMC8477002.
      View in: PubMed   Mentions: 2  
    20. Tracing the fate of wastewater viruses reveals catchment-scale virome diversity and connectivity. Water Res. 2021 Sep 15; 203:117568. Adriaenssens EM, Farkas K, McDonald JE, Jones DL, Allison HE, McCarthy AJ. PMID: 34450465.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansCellsPHPublic Health
    21. Monitoring SARS-CoV-2 in municipal wastewater to evaluate the success of lockdown measures for controlling COVID-19 in the UK. Water Res. 2021 Jul 15; 200:117214. Hillary LS, Farkas K, Maher KH, Lucaci A, Thorpe J, Distaso MA, Gaze WH, Paterson S, Burke T, Connor TR, McDonald JE, Malham SK, Jones DL. PMID: 34058486; PMCID: PMC8105641.
      View in: PubMed   Mentions: 79     Fields:    Translation:HumansCellsPHPublic Health
    22. Concentration and Quantification of SARS-CoV-2 RNA in Wastewater Using Polyethylene Glycol-Based Concentration and qRT-PCR. Methods Protoc. 2021 Feb 23; 4(1). Farkas K, Hillary LS, Thorpe J, Walker DI, Lowther JA, McDonald JE, Malham SK, Jones DL. PMID: 33672247; PMCID: PMC8005995.
      View in: PubMed   Mentions: 37  
    23. E. coli Is a Poor End-Product Criterion for Assessing the General Microbial Risk Posed From Consuming Norovirus Contaminated Shellfish. Front Microbiol. 2021; 12:608888. Sharp JH, Clements K, Diggens M, McDonald JE, Malham SK, Jones DL. PMID: 33679634; PMCID: PMC7933002.
      View in: PubMed   Mentions: 6  
    24. Application of ecological and evolutionary theory to microbiome community dynamics across systems. Proc Biol Sci. 2020 12 23; 287(1941):20202886. McDonald JE, Marchesi JR, Koskella B. PMID: 33352082; PMCID: PMC7779500.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimals
    25. Impact of Sediment Concentration on the Survival of Wastewater-Derived blaCTX-M-15-Producing E. coli, and the Implications for Dispersal into Estuarine Waters. Int J Environ Res Public Health. 2020 10 19; 17(20). Bashawri YM, Robins P, Cooper DM, McDonald JE, Jones DL, Williams AP. PMID: 33086623; PMCID: PMC7589618.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCellsPHPublic Health
    26. Host-microbiota-insect interactions drive emergent virulence in a complex tree disease. Proc Biol Sci. 2020 08 26; 287(1933):20200956. Doonan JM, Broberg M, Denman S, McDonald JE. PMID: 32811286; PMCID: PMC7482278.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    27. A Large-Class Undergraduate Microbiology Laboratory Activity on Microbial Diversity and Antimicrobial Resistance. J Microbiol Biol Educ. 2020; 21(2). Farkas K, McDonald JE. PMID: 32742548; PMCID: PMC7386325.
      View in: PubMed   Mentions: 1  
    28. Shedding of SARS-CoV-2 in feces and urine and its potential role in person-to-person transmission and the environment-based spread of COVID-19. Sci Total Environ. 2020 Dec 20; 749:141364. Jones DL, Baluja MQ, Graham DW, Corbishley A, McDonald JE, Malham SK, Hillary LS, Connor TR, Gaze WH, Moura IB, Wilcox MH, Farkas K. PMID: 32836117; PMCID: PMC7836549.
      View in: PubMed   Mentions: 216     Fields:    Translation:HumansCells
    29. Wastewater and public health: the potential of wastewater surveillance for monitoring COVID-19. Curr Opin Environ Sci Health. 2020 Oct; 17:14-20. Farkas K, Hillary LS, Malham SK, McDonald JE, Jones DL. PMID: 32835157; PMCID: PMC7291992.
      View in: PubMed   Mentions: 101  
    30. Viral indicators for tracking domestic wastewater contamination in the aquatic environment. Water Res. 2020 Aug 15; 181:115926. Farkas K, Walker DI, Adriaenssens EM, McDonald JE, Hillary LS, Malham SK, Jones DL. PMID: 32417460; PMCID: PMC7211501.
      View in: PubMed   Mentions: 49     Fields:    Translation:HumansCellsPHPublic Health
    31. Survival of Brenneria goodwinii and Gibbsiella quercinecans, associated with acute oak decline, in rainwater and forest soil. Syst Appl Microbiol. 2020 Mar; 43(2):126052. Pettifor BJ, Doonan J, Denman S, McDonald JE. PMID: 31932140.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCellsPHPublic Health
    32. Critical Evaluation of CrAssphage as a Molecular Marker for Human-Derived Wastewater Contamination in the Aquatic Environment. Food Environ Virol. 2019 06; 11(2):113-119. Farkas K, Adriaenssens EM, Walker DI, McDonald JE, Malham SK, Jones DL. PMID: 30758724; PMCID: PMC6513805.
      View in: PubMed   Mentions: 48     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    33. Extraction of Microbial and Host DNA, RNA, and Proteins from Oak Bark Tissue. Methods Protoc. 2019 Feb 05; 2(1). Broberg M, McDonald JE. PMID: 31164597; PMCID: PMC6481080.
      View in: PubMed   Mentions: 1  
    34. Genomic analysis of bacteria in the Acute Oak Decline pathobiome. Microb Genom. 2019 01; 5(1). Doonan J, Denman S, Pachebat JA, McDonald JE. PMID: 30625111; PMCID: PMC6412055.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    35. Seasonal and diurnal surveillance of treated and untreated wastewater for human enteric viruses. Environ Sci Pollut Res Int. 2018 Nov; 25(33):33391-33401. Farkas K, Marshall M, Cooper D, McDonald JE, Malham SK, Peters DE, Maloney JD, Jones DL. PMID: 30259243; PMCID: PMC6245017.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCellsPHPublic Health
    36. Two-Step Concentration of Complex Water Samples for the Detection of Viruses. Methods Protoc. 2018 Sep 10; 1(3). Farkas K, McDonald JE, Malham SK, Jones DL. PMID: 31164575; PMCID: PMC6481077.
      View in: PubMed   Mentions: 14  
    37. The presence of large focal lesions is a strong independent prognostic factor in multiple myeloma. Blood. 2018 07 05; 132(1):59-66. Rasche L, Angtuaco EJ, Alpe TL, Gershner GH, McDonald JE, Samant RS, Kumar M, Van Hemert R, Epstein J, Deshpande S, Tytarenko R, Yaccoby S, Hillengass J, Thanendrarajan S, Schinke C, van Rhee F, Zangari M, Walker BA, Barlogie B, Morgan GJ, Davies FE, Weinhold N. PMID: 29784643; PMCID: PMC6034645.
      View in: PubMed   Mentions: 61     Fields:    Translation:HumansCTClinical Trials
    38. Seasonal and spatial dynamics of enteric viruses in wastewater and in riverine and estuarine receiving waters. Sci Total Environ. 2018 Sep 01; 634:1174-1183. Farkas K, Cooper DM, McDonald JE, Malham SK, de Rougemont A, Jones DL. PMID: 29710623.
      View in: PubMed   Mentions: 71     Fields:    Translation:PHPublic Health
    39. Treatment to suppression of focal lesions on positron emission tomography-computed tomography is a therapeutic goal in newly diagnosed multiple myeloma. Haematologica. 2018 06; 103(6):1047-1053. Davies FE, Rosenthal A, Rasche L, Petty NM, McDonald JE, Ntambi JA, Steward DM, Panozzo SB, van Rhee F, Zangari M, Schinke CD, Thanendrarajan S, Walker B, Weinhold N, Barlogie B, Hoering A, Morgan GJ. PMID: 29567784; PMCID: PMC6058800.
      View in: PubMed   Mentions: 39     Fields:    Translation:Humans
    40. Integrated multi-omic analysis of host-microbiota interactions in acute oak decline. Microbiome. 2018 01 30; 6(1):21. Broberg M, Doonan J, Mundt F, Denman S, McDonald JE. PMID: 29378627; PMCID: PMC5789699.
      View in: PubMed   Mentions: 21     Fields:    Translation:AnimalsCells
    41. Physicochemical Factors Influence the Abundance and Culturability of Human Enteric Pathogens and Fecal Indicator Organisms in Estuarine Water and Sediment. Front Microbiol. 2017; 8:1996. Hassard F, Andrews A, Jones DL, Parsons L, Jones V, Cox BA, Daldorph P, Brett H, McDonald JE, Malham SK. PMID: 29089931; PMCID: PMC5650961.
      View in: PubMed   Mentions: 11  
    42. Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline. ISME J. 2018 02; 12(2):386-399. Denman S, Doonan J, Ransom-Jones E, Broberg M, Plummer S, Kirk S, Scarlett K, Griffiths AR, Kaczmarek M, Forster J, Peace A, Golyshin PN, Hassard F, Brown N, Kenny JG, McDonald JE. PMID: 29028005; PMCID: PMC5776452.
      View in: PubMed   Mentions: 30     Fields:    Translation:AnimalsCells
    43. Subtle shifts in microbial communities occur alongside the release of carbon induced by drought and rewetting in contrasting peatland ecosystems. Sci Rep. 2017 09 12; 7(1):11314. Potter C, Freeman C, Golyshin PN, Ackermann G, Fenner N, McDonald JE, Ehbair A, Jones TG, Murphy LM, Creer S. PMID: 28900257; PMCID: PMC5595961.
      View in: PubMed   Mentions: 12     Fields:    Translation:PHPublic Health
    44. Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass-Degrading Diversity. mSphere. 2017 Jul-Aug; 2(4). Ransom-Jones E, McCarthy AJ, Haldenby S, Doonan J, McDonald JE. PMID: 28776044; PMCID: PMC5541161.
      View in: PubMed   Mentions: 21     Fields:    
    45. Multilocus sequence typing provides insights into the population structure and evolutionary potential of Brenneria goodwinii, associated with acute oak decline. PLoS One. 2017; 12(6):e0178390. Kaczmarek M, Mullett MS, McDonald JE, Denman S. PMID: 28570630; PMCID: PMC5453491.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    46. Fifty important research questions in microbial ecology. FEMS Microbiol Ecol. 2017 05 01; 93(5). Antwis RE, Griffiths SM, Harrison XA, Aranega-Bou P, Arce A, Bettridge AS, Brailsford FL, de Menezes A, Devaynes A, Forbes KM, Fry EL, Goodhead I, Haskell E, Heys C, James C, Johnston SR, Lewis GR, Lewis Z, Macey MC, McCarthy A, McDonald JE, Mejia-Florez NL, O'Brien D, Orland C, Pautasso M, Reid WDK, Robinson HA, Wilson K, Sutherland WJ. PMID: 28379446.
      View in: PubMed   Mentions: 64     Fields:    Translation:HumansCellsPHPublic Health
    47. Low expression of hexokinase-2 is associated with false-negative FDG-positron emission tomography in multiple myeloma. Blood. 2017 07 06; 130(1):30-34. Rasche L, Angtuaco E, McDonald JE, Buros A, Stein C, Pawlyn C, Thanendrarajan S, Schinke C, Samant R, Yaccoby S, Walker BA, Epstein J, Zangari M, van Rhee F, Meissner T, Goldschmidt H, Hemminki K, Houlston R, Barlogie B, Davies FE, Morgan GJ, Weinhold N. PMID: 28432222; PMCID: PMC5501152.
      View in: PubMed   Mentions: 134     Fields:    Translation:Humans
    48. Evaluation of Two Triplex One-Step qRT-PCR Assays for the Quantification of Human Enteric Viruses in Environmental Samples. Food Environ Virol. 2017 09; 9(3):342-349. Farkas K, Peters DE, McDonald JE, de Rougemont A, Malham SK, Jones DL. PMID: 28391510; PMCID: PMC5548846.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCellsPHPublic Health
    49. Regarding Harolds et al, "Recruitment into a Combined Radiology/Nuclear Medicine Subspecialty". J Am Coll Radiol. 2017 04; 14(4):450-451. McDonald JE, Bezold SL, Deloney LA, Jambhekar K. PMID: 28259498.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    50. Critical Review on the Public Health Impact of Norovirus Contamination in Shellfish and the Environment: A UK Perspective. Food Environ Virol. 2017 06; 9(2):123-141. Hassard F, Sharp JH, Taft H, LeVay L, Harris JP, McDonald JE, Tuson K, Wilson J, Jones DL, Malham SK. PMID: 28176295; PMCID: PMC5429388.
      View in: PubMed   Mentions: 30     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    51. Evaluation of Molecular Methods for the Detection and Quantification of Pathogen-Derived Nucleic Acids in Sediment. Front Microbiol. 2017; 8:53. Farkas K, Hassard F, McDonald JE, Malham SK, Jones DL. PMID: 28174565; PMCID: PMC5258707.
      View in: PubMed   Mentions: 17  
    52. Shotgun Metagenomic Sequencing Analysis of Soft-Rot Enterobacteriaceae in Polymicrobial Communities. Methods Mol Biol. 2017; 1539:85-97. Doonan J, Denman S, McDonald JE, Golyshin PN. PMID: 27900686.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    53. Abundance and Distribution of Enteric Bacteria and Viruses in Coastal and Estuarine Sediments-a Review. Front Microbiol. 2016; 7:1692. Hassard F, Gwyther CL, Farkas K, Andrews A, Jones V, Cox B, Brett H, Jones DL, McDonald JE, Malham SK. PMID: 27847499; PMCID: PMC5088438.
      View in: PubMed   Mentions: 34  
    54. Assessment of Total Lesion Glycolysis by 18F FDG PET/CT Significantly Improves Prognostic Value of GEP and ISS in Myeloma. Clin Cancer Res. 2017 04 15; 23(8):1981-1987. McDonald JE, Kessler MM, Gardner MW, Buros AF, Ntambi JA, Waheed S, van Rhee F, Zangari M, Heuck CJ, Petty N, Schinke C, Thanendrarajan S, Mitchell A, Hoering A, Barlogie B, Morgan GJ, Davies FE. PMID: 27698001; PMCID: PMC5777601.
      View in: PubMed   Mentions: 69     Fields:    Translation:HumansCells
    55. Draft Genome Sequence of Clostridium sp. Strain W14A Isolated from a Cellulose-Degrading Biofilm in a Landfill Leachate Microcosm. Genome Announc. 2016 Sep 22; 4(5). Ransom-Jones E, McDonald JE. PMID: 27660778; PMCID: PMC5034129.
      View in: PubMed   Mentions: 2  
    56. Use of Mytilus edulis biosentinels to investigate spatial patterns of norovirus and faecal indicator organism contamination around coastal sewage discharges. Water Res. 2016 Nov 15; 105:241-250. Winterbourn JB, Clements K, Lowther JA, Malham SK, McDonald JE, Jones DL. PMID: 27619500.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    57. Isolation studies reveal a shift in the cultivable microbiome of oak affected with Acute Oak Decline. Syst Appl Microbiol. 2016 Oct; 39(7):484-490. Denman S, Plummer S, Kirk S, Peace A, McDonald JE. PMID: 27553488.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    58. Characterising the Canine Oral Microbiome by Direct Sequencing of Reverse-Transcribed rRNA Molecules. PLoS One. 2016; 11(6):e0157046. McDonald JE, Larsen N, Pennington A, Connolly J, Wallis C, Rooks DJ, Hall N, McCarthy AJ, Allison HE. PMID: 27276347; PMCID: PMC4898712.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    59. Spatial patterns and environmental constraints on ecosystem services at a catchment scale. Sci Total Environ. 2016 Dec 01; 572:1586-1600. Emmett BA, Cooper D, Smart S, Jackson B, Thomas A, Cosby B, Evans C, Glanville H, McDonald JE, Malham SK, Marshall M, Jarvis S, Rajko-Nenow P, Webb GP, Ward S, Rowe E, Jones L, Vanbergen AJ, Keith A, Carter H, Pereira MG, Hughes S, Lebron I, Wade A, Jones DL. PMID: 27156120.
      View in: PubMed   Mentions: 8     Fields:    
    60. Decay rates of faecal indicator bacteria from sewage and ovine faeces in brackish and freshwater microcosms with contrasting suspended particulate matter concentrations. Sci Total Environ. 2016 Dec 01; 572:1645-1652. Perkins TL, Perrow K, Rajko-Nenow P, Jago CF, Jones DL, Malham SK, McDonald JE. PMID: 27039273.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansAnimalsCells
    61. 111In-Pentetreotide Imaging in Diffuse Idiopathic Neuroendocrine Hyperplasia of the Lung. Clin Nucl Med. 2016 Mar; 41(3):239-40. Kuruva M, Shah HR, Dunn AL, McDonald JE. PMID: 26595338.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    62. Lessons Learned Establishing a Radiology Resident Education Fund. J Am Coll Radiol. 2016 Feb; 13(2):196-7. Jambhekar K, McDonald JE, Braswell LE, Deloney LA. PMID: 26395647.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    63. A Unique Case of Diffuse Metastatic Neuroendocrine Cancer with Subcutaneous Nodules on (18)F-Fluorodeoxyglucose Positron Emission Tomography/Computer Assisted Tomography. World J Nucl Med. 2015 May-Aug; 14(2):134-6. Johnston MJ, Sachedina A, McDonald JE. PMID: 26097426; PMCID: PMC4455171.
      View in: PubMed   Mentions:
    64. Using chemical, microbial and fluorescence techniques to understand contaminant sources and pathways to wetlands in a conservation site. Sci Total Environ. 2015 Apr 01; 511:703-10. Rhymes J, Jones L, Lapworth DJ, White D, Fenner N, McDonald JE, Perkins TL. PMID: 25616189.
      View in: PubMed   Mentions: 1     Fields:    Translation:CellsPHPublic Health
    65. The intergenic transcribed spacer region 1 as a molecular marker for identification and discrimination of Enterobacteriaceae associated with acute oak decline. J Appl Microbiol. 2015 Jan; 118(1):193-201. Doonan J, Denman S, Gertler C, Pachebat JA, Golyshin PN, McDonald JE. PMID: 25355271.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    66. Sediment composition influences spatial variation in the abundance of human pathogen indicator bacteria within an estuarine environment. PLoS One. 2014; 9(11):e112951. Perkins TL, Clements K, Baas JH, Jago CF, Jones DL, Malham SK, McDonald JE. PMID: 25397595; PMCID: PMC4232572.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansCellsPHPublic Health
    67. Pulmonary arterial hypertension: Part 1: A review for an internist. J Ark Med Soc. 2014 Sep; 111(4):62-4. McDonald JE, Deloney LA, Jambhekar K. PMID: 25255688.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    68. Integrated residency training leading to radiology and nuclear medicine board certification: the Arkansas experience. J Ark Med Soc. 2014 Aug; 111(2):38-9. McDonald JE, Deloney LA, Jambhekar K. PMID: 25174156.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    69. The interaction of human microbial pathogens, particulate material and nutrients in estuarine environments and their impacts on recreational and shellfish waters. Environ Sci Process Impacts. 2014 Sep 20; 16(9):2145-55. Malham SK, Rajko-Nenow P, Howlett E, Tuson KE, Perkins TL, Pallett DW, Wang H, Jago CF, Jones DL, McDonald JE. PMID: 25043898.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansCellsPHPublic Health
    70. Distribution and diversity of members of the bacterial phylum Fibrobacteres in environments where cellulose degradation occurs. Syst Appl Microbiol. 2014 Oct; 37(7):502-9. Ransom-Jones E, Jones DL, Edwards A, McDonald JE. PMID: 25154048.
      View in: PubMed   Mentions: 12     Fields:    Translation:CellsPHPublic Health
    71. Radiation safety concerns and clinical decision support in computed tomography. J Ark Med Soc. 2014 Jun; 110(13):276-7. McDonald JE, Nelsen DA. PMID: 25004667.
      View in: PubMed   Mentions:    Fields:    Translation:HumansPHPublic Health
    72. Adapting ACGME-Accredited Training to Meet Changing Demands of the Workforce: The NuRad Pathway. J Grad Med Educ. 2014 Jun; 6(2):372-3. McDonald JE, Deloney LA, Jambhekar K. PMID: 24949162; PMCID: PMC4054757.
      View in: PubMed   Mentions:    Fields:    
    73. Grover disease (transient acantholytic dermatosis) in acute myeloid leukemia on FDG PET/CT. Clin Nucl Med. 2014 Feb; 39(2):e173-5. Zhu HJ, Clark LN, Deloney LA, McDonald JE. PMID: 24152615.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    74. Server-based enterprise collaboration software improves safety and quality in high-volume PET/CT practice. J Nucl Med Technol. 2013 Dec; 41(4):289-91. McDonald JE, Kessler MM, Hightower JL, Henry SD, Deloney LA. PMID: 24159008.
      View in: PubMed   Mentions:    Fields:    
    75. Re: "Appropriate responsibilities and actions of radiologists in radiologic accidents and crises". J Am Coll Radiol. 2013 Aug; 10(8):640. Kessler MM, Johnston M, McDonald JE. PMID: 23796474.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    76. Bioreduction of sheep carcasses effectively contains and reduces pathogen levels under operational and simulated breakdown conditions. Environ Sci Technol. 2013 May 21; 47(10):5267-75. Gwyther CL, Jones DL, Golyshin PN, Edwards-Jones G, McKillen J, McNair I, McDonald JE, Williams AP. PMID: 23590844.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCellsPHPublic Health
    77. Prevalence of drug-resistant HIV type 1 at the time of initiation of antiretroviral therapy in Portland, Oregon. AIDS Res Hum Retroviruses. 2013 Feb; 29(2):337-42. MacVeigh MS, Kosmetatos MK, McDonald JE, Reeder JL, Parrish DA, Young TP. PMID: 22697610.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    78. A new system, the LipiFlow, for the treatment of meibomian gland dysfunction. Cornea. 2012 Apr; 31(4):396-404. Lane SS, DuBiner HB, Epstein RJ, Ernest PH, Greiner JV, Hardten DR, Holland EJ, Lemp MA, McDonald JE, Silbert DI, Blackie CA, Stevens CA, Bedi R. PMID: 22222996.
      View in: PubMed   Mentions: 109     Fields:    Translation:Humans
    79. Importance of Micromonospora spp. as colonizers of cellulose in freshwater lakes as demonstrated by quantitative reverse transcriptase PCR of 16S rRNA. Appl Environ Microbiol. 2012 May; 78(9):3495-9. de Menezes AB, McDonald JE, Allison HE, McCarthy AJ. PMID: 22389367; PMCID: PMC3346464.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    80. The microbial ecology of anaerobic cellulose degradation in municipal waste landfill sites: evidence of a role for fibrobacters. Environ Microbiol. 2012 Apr; 14(4):1077-87. McDonald JE, Houghton JN, Rooks DJ, Allison HE, McCarthy AJ. PMID: 22225785.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCellsPHPublic Health
    81. The Fibrobacteres: an important phylum of cellulose-degrading bacteria. Microb Ecol. 2012 Feb; 63(2):267-81. Ransom-Jones E, Jones DL, McCarthy AJ, McDonald JE. PMID: 22213055.
      View in: PubMed   Mentions: 152     Fields:    Translation:AnimalsCellsPHPublic Health
    82. Methods for the isolation of cellulose-degrading microorganisms. Methods Enzymol. 2012; 510:349-74. McDonald JE, Rooks DJ, McCarthy AJ. PMID: 22608736.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    83. Metagenomic approaches to the discovery of cellulases. Methods Enzymol. 2012; 510:375-94. Rooks DJ, McDonald JE, McCarthy AJ. PMID: 22608737.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    84. Identification of carbohydrate metabolism genes in the metagenome of a marine biofilm community shown to be dominated by gammaproteobacteria and bacteroidetes. Genes (Basel). 2010 Oct 26; 1(3):371-84. Edwards JL, Smith DL, Connolly J, McDonald JE, Cox MJ, Joint I, Edwards C, McCarthy AJ. PMID: 24710093; PMCID: PMC3966224.
      View in: PubMed   Mentions: 33     Fields:    
    85. 454-pyrosequencing: a molecular battiscope for freshwater viral ecology. Genes (Basel). 2010 Jul 21; 1(2):210-26. Rooks DJ, Smith DL, McDonald JE, Woodward MJ, McCarthy AJ, Allison HE. PMID: 24710042; PMCID: PMC3954088.
      View in: PubMed   Mentions: 6     Fields:    
    86. Development and validation of a qPCR-based method for quantifying Shiga toxin-encoding and other lambdoid bacteriophages. Environ Microbiol. 2010 May; 12(5):1194-204. Rooks DJ, Yan Y, McDonald JE, Woodward MJ, McCarthy AJ, Allison HE. PMID: 20148931.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    87. High-throughput method for rapid induction of prophages from lysogens and its application in the study of Shiga Toxin-encoding Escherichia coli strains. Appl Environ Microbiol. 2010 Apr; 76(7):2360-5. McDonald JE, Smith DL, Fogg PC, McCarthy AJ, Allison HE. PMID: 20139312; PMCID: PMC2849228.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    88. Composition of the landfill microbial community as determined by application of domain- and group-specific 16S and 18S rRNA-targeted oligonucleotide probes. Appl Environ Microbiol. 2010 Feb; 76(4):1301-6. McDonald JE, Allison HE, McCarthy AJ. PMID: 20023104; PMCID: PMC2820961.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCellsPHPublic Health
    89. A new interocular suppression technique for measuring sensory eye dominance. Invest Ophthalmol Vis Sci. 2010 Jan; 51(1):588-93. Yang E, Blake R, McDonald JE. PMID: 19628736; PMCID: PMC2810859.
      View in: PubMed   Mentions: 41     Fields:    Translation:Humans
    90. Molecular biological detection and quantification of novel Fibrobacter populations in freshwater lakes. Appl Environ Microbiol. 2009 Aug; 75(15):5148-52. McDonald JE, de Menezes AB, Allison HE, McCarthy AJ. PMID: 19502438; PMCID: PMC2725500.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCellsPHPublic Health
    91. Detection of novel Fibrobacter populations in landfill sites and determination of their relative abundance via quantitative PCR. Environ Microbiol. 2008 May; 10(5):1310-9. McDonald JE, Lockhart RJ, Cox MJ, Allison HE, McCarthy AJ. PMID: 18266756.
      View in: PubMed   Mentions: 7     Fields:    Translation:CellsPHPublic Health
    92. Contact lens assisted pharmacologically induced keratoshaping. Eye Contact Lens. 2004 Jul; 30(3):122-6. McDonald JE, Mertins A, Deitz D. PMID: 15499230.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    93. Removal of Intacs with a fractured positioning hole. J Refract Surg. 2004 Mar-Apr; 20(2):182-3. McDonald JE, Deitz DJ. PMID: 15072320.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    94. Onagers, a potential pasture parasite management tool in zoological collections. Vet Rec. 2004 Jan 24; 154(4):118-9. Dagleish MP, Ashley F, Marley CL, MacKenzie C, McDonald JE, Siah S, Sanderson S. PMID: 14765901.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    95. Positron emission tomography. The St. Vincent experience. J Ark Med Soc. 2003 Jun; 99(12):391-4. Harris WT, Prather JL, McDonald JE, Goad K, Goad M, Holman K. PMID: 12817517.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    96. Two-year outcomes of intrastromal corneal ring segments for the correction of myopia. Ophthalmology. 2001 Sep; 108(9):1688-94. Schanzlin DJ, Abbott RL, Asbell PA, Assil KK, Burris TE, Durrie DS, Fouraker BD, Lindstrom RL, McDonald JE, Verity SM, Waring GO. PMID: 11535474.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansCTClinical Trials
    97. Effect of brimonidine tartrate ophthalmic solution 0.2% on pupil size in normal eyes under different luminance conditions. J Cataract Refract Surg. 2001 Apr; 27(4):560-4. McDonald JE, El-Moatassem Kotb AM, Decker BB. PMID: 11311624.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    98. Aid for keratoconus patient. J Cataract Refract Surg. 2001 Mar; 27(3):341. McDonald JE. PMID: 11322136.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    99. Phosphorylation of the Gq/11-coupled m3-muscarinic receptor is involved in receptor activation of the ERK-1/2 mitogen-activated protein kinase pathway. J Biol Chem. 2001 Feb 16; 276(7):4581-7. Budd DC, Willars GB, McDonald JE, Tobin AB. PMID: 11083874.
      View in: PubMed   Mentions: 23     Fields:    Translation:AnimalsCells
    100. Phosphorylation and regulation of a Gq/11-coupled receptor by casein kinase 1alpha. J Biol Chem. 2000 Jun 30; 275(26):19667-75. Budd DC, McDonald JE, Tobin AB. PMID: 10777483.
      View in: PubMed   Mentions: 27     Fields:    Translation:HumansAnimalsCells
    101. Breast cancer metastatic to the lung. J Ark Med Soc. 1990 Jan; 86(8):320-1. Amir J, Atkinson WE, McDonald JE, Langston HD, Farley H. PMID: 2154444.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    102. Carcinoma of lung with mediastinal metastasis. J Ark Med Soc. 1986 Sep; 83(4):184-5. Araoz CA, Landgren RC, Lincoln BM, McDonald JE, Ross SW. PMID: 2944879.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    103. Detection of breast cancer in the asymptomatic woman. J Ark Med Soc. 1984 Mar; 80(10):441-3. McDonald JE. PMID: 6232254.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    104. Tear duct obstruction in the infant--a practical approach to diagnosis and therapy. J Ark Med Soc. 1974 Jan; 70(8):264-5. McDonald JE. PMID: 4275902.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
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