Parul Kudtarkar

Title(s)	Sr Bioinfo Analyst, Pediatrics
School	Vc-health Sciences-schools
Address	9500 Gilman Drive # La Jolla CA 92093
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Biography

Education and Training

Northeastern University, Boston

Overview

Interests

Bioinformatics, Cloud Computing, Genetics, Data Visualization, Machine learning

Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.

Sex-specific regulatory architecture of pancreatic islets from subjects with and without type 2 diabetes. EMBO J. 2024 Nov 20. Qadir MMF, Elgamal RM, Song K, Kudtarkar P, Sakamuri SSVP, Katakam PV, El-Dahr SS, Kolls JK, Gaulton KJ, Mauvais-Jarvis F. PMID: 39567827.

View in: PubMed Mentions: Fields:
Bio Biotechnology Mol Molecular Biology
Single cell multiome profiling of pancreatic islets reveals physiological changes in cell type-specific regulation associated with diabetes risk. bioRxiv. 2024 Aug 06. Mummey HM, Elison W, Korgaonkar K, Elgamal RM, Kudtarkar P, Griffin E, Benaglio P, Miller M, Jha A, Fox JEM, McCarthy MI, Preissl S, Gloyn AL, MacDonald PE, Gaulton KJ. PMID: 39149326; PMCID: PMC11326183.

View in: PubMed Mentions:
Genetic association and machine learning improves discovery and prediction of type 1 diabetes. medRxiv. 2024 Aug 02. McGrail C, Sears TJ, Kudtarkar P, Carter H, Gaulton K. PMID: 39132494; PMCID: PMC11312647.

View in: PubMed Mentions:
Single cell regulatory architecture of human pancreatic islets suggests sex differences in β cell function and the pathogenesis of type 2 diabetes. Res Sq. 2024 Jul 03. Qadir MMF, Elgamal RM, Song K, Kudtarkar P, Sakamuri SSVP, Katakam PV, El-Dahr SS, Kolls JK, Gaulton KJ, Mauvais-Jarvis F. PMID: 39011095; PMCID: PMC11247939.

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Single cell regulatory architecture of human pancreatic islets suggests sex differences in β cell function and the pathogenesis of type 2 diabetes. bioRxiv. 2024 Jun 11. Qadir MMF, Elgamal RM, Song K, Kudtarkar P, Sakamuri SSVP, Katakam PV, El-Dahr S, Kolls J, Gaulton KJ, Mauvais-Jarvis F. PMID: 38645001; PMCID: PMC11030320.

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An Integrated Map of Cell Type-Specific Gene Expression in Pancreatic Islets. Diabetes. 2023 Nov 01; 72(11):1719-1728. Elgamal RM, Kudtarkar P, Melton RL, Mummey HM, Benaglio P, Okino ML, Gaulton KJ. PMID: 37582230; PMCID: PMC10588282.

View in: PubMed Mentions: 17 Fields:
End Endocrinology
Translation:Humans
Cardiovascular Disease Knowledge Portal: A Community Resource for Cardiovascular Disease Research. Circ Genom Precis Med. 2023 12; 16(6):e004181. Costanzo MC, Roselli C, Brandes M, Duby M, Hoang Q, Jang D, Koesterer R, Kudtarkar P, Moriondo A, Nguyen T, Ruebenacker O, Smadbeck P, Sun Y, Butterworth AS, Aragam KG, Lumbers RT, Khera AV, Lubitz SA, Ellinor PT, Gaulton KJ, Flannick J, Burtt NP. PMID: 37814896; PMCID: PMC10843166.

View in: PubMed Mentions: 3 Fields:
Car Cardiology Gen Genetics Vas Vascular Diseases
Translation:Humans
Leveraging type 1 diabetes human genetic and genomic data in the T1D knowledge portal. PLoS Biol. 2023 08; 21(8):e3002233. Kudtarkar P, Costanzo MC, Sun Y, Jang D, Koesterer R, Mychaleckyj JC, Nayak U, Onengut-Gumuscu S, Rich SS, Flannick JA, Gaulton KJ, Burtt NP. PMID: 37561710; PMCID: PMC10414605.

View in: PubMed Mentions: 2 Fields:
Bio Biology
Translation:Humans
The Type 2 Diabetes Knowledge Portal: An open access genetic resource dedicated to type 2 diabetes and related traits. Cell Metab. 2023 04 04; 35(4):695-710.e6. Costanzo MC, von Grotthuss M, Massung J, Jang D, Caulkins L, Koesterer R, Gilbert C, Welch RP, Kudtarkar P, Hoang Q, Boughton AP, Singh P, Sun Y, Duby M, Moriondo A, Nguyen T, Smadbeck P, Alexander BR, Brandes M, Carmichael M, Dornbos P, Green T, Huellas-Bruskiewicz KC, Ji Y, Kluge A, McMahon AC, Mercader JM, Ruebenacker O, Sengupta S, Spalding D, Taliun D, AMP-T2D Consortium, Smith P, Thomas MK, Akolkar B, Brosnan MJ, Cherkas A, Chu AY, Fauman EB, Fox CS, Kamphaus TN, Miller MR, Nguyen L, Parsa A, Reilly DF, Ruetten H, Wholley D, Zaghloul NA, Abecasis GR, Altshuler D, Keane TM, McCarthy MI, Gaulton KJ, Florez JC, Boehnke M, Burtt NP, Flannick J. PMID: 36963395; PMCID: PMC10231654.

View in: PubMed Mentions: 35 Fields:
Cel Cell Biology Met Metabolism
Translation:Humans
Leveraging type 1 diabetes human genetic and genomic data in the T1D Knowledge Portal. bioRxiv. 2023 Feb 05. Kudtarkar P, Costanzo MC, Sun Y, Jang D, Koesterer R, Mychaleckyj JC, Nayak U, Onengut-Gumuscu S, Rich SS, Flannick JA, Gaulton KJ, Burtt NP. PMID: 36778413; PMCID: PMC9915602.

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An integrated map of cell type-specific gene expression in pancreatic islets. bioRxiv. 2023 Feb 04. Elgamal RM, Kudtarkar P, Melton RL, Mummey HM, Benaglio P, Okino ML, Gaulton KJ. PMID: 36778506; PMCID: PMC9915747.

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Single-cell chromatin accessibility identifies pancreatic islet cell type- and state-specific regulatory programs of diabetes risk. Nat Genet. 2021 04; 53(4):455-466. Chiou J, Zeng C, Cheng Z, Han JY, Schlichting M, Miller M, Mendez R, Huang S, Wang J, Sui Y, Deogaygay A, Okino ML, Qiu Y, Sun Y, Kudtarkar P, Fang R, Preissl S, Sander M, Gorkin DU, Gaulton KJ. PMID: 33795864; PMCID: PMC9037575.

View in: PubMed Mentions: 83 Fields:
Gen Genetics
Translation:Humans Cells
Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes. Elife. 2020 11 09; 9. Wang A, Chiou J, Poirion OB, Buchanan J, Valdez MJ, Verheyden JM, Hou X, Kudtarkar P, Narendra S, Newsome JM, Guo M, Faddah DA, Zhang K, Young RE, Barr J, Sajti E, Misra R, Huyck H, Rogers L, Poole C, Whitsett JA, Pryhuber G, Xu Y, Gaulton KJ, Preissl S, Sun X, NHLBI LungMap Consortium. PMID: 33164753; PMCID: PMC7688309.

View in: PubMed Mentions: 91 Fields:
Bio Biology
Translation:Humans Cells PHPublic Health
Developmental effector gene regulation: Multiplexed strategies for functional analysis. Dev Biol. 2019 01 01; 445(1):68-79. Wang L, Koppitch K, Cutting A, Dong P, Kudtarkar P, Zeng J, Cameron RA, Davidson EH. PMID: 30392838; PMCID: PMC6321769.

View in: PubMed Mentions: 1 Fields:
Bio Biology Emb Embryology
Translation:Animals Cells
Echinobase: an expanding resource for echinoderm genomic information. Database (Oxford). 2017 01 01; 2017. Kudtarkar P, Cameron RA. PMID: 29220460; PMCID: PMC5737241.

View in: PubMed Mentions: 33 Fields:
Com Computational Biology
Translation:Animals
Do echinoderm genomes measure up? Mar Genomics. 2015 Aug; 22:1-9. Cameron RA, Kudtarkar P, Gordon SM, Worley KC, Gibbs RA. PMID: 25701080; PMCID: PMC4489978.

View in: PubMed Mentions: 13 Fields:
Bio Biology Gen Genetics
Translation:Animals Cells
Cost-effective cloud computing: a case study using the comparative genomics tool, roundup. Evol Bioinform Online. 2010 Dec 22; 6:197-203. Kudtarkar P, Deluca TF, Fusaro VA, Tonellato PJ, Wall DP. PMID: 21258651; PMCID: PMC3023304.

View in: PubMed Mentions: 13
Cloud computing for comparative genomics. BMC Bioinformatics. 2010 May 18; 11:259. Wall DP, Kudtarkar P, Fusaro VA, Pivovarov R, Patil P, Tonellato PJ. PMID: 20482786; PMCID: PMC3098063.

View in: PubMed Mentions: 38 Fields:
Com Computational Biology