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Oliver Ryder

Title(s)Adjunct Professor, Ecology, Behavior, and Evolution
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    COMPARATIVE MOLECULAR CYTOGENETICS
    NIH/NIGMS R01GM023073Jun 1, 1976 - Jul 31, 1988
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. Proc Natl Acad Sci U S A. 2020 Aug 21. Damas J, Hughes GM, Keough KC, Painter CA, Persky NS, Corbo M, Hiller M, Koepfli KP, Pfenning AR, Zhao H, Genereux DP, Swofford R, Pollard KS, Ryder OA, Nweeia MT, Lindblad-Toh K, Teeling EC, Karlsson EK, Lewin HA. PMID: 32826334.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    2. Publisher Correction: The tuatara genome reveals ancient features of amniote evolution. Nature. 2020 Aug 18. Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, Martin FJ, Flicek P, Petersen B, Kang L, Michalak P, Buckley TR, Wilson M, Cheng Y, Miller H, Schott RK, Jordan MD, Newcomb RD, Arroyo JI, Valenzuela N, Hore TA, Renart J, Peona V, Peart CR, Warmuth VM, Zeng L, Kortschak RD, Raison JM, Zapata VV, Wu Z, Santesmasses D, Mariotti M, Guigó R, Rupp SM, Twort VG, Dussex N, Taylor H, Abe H, Bond DM, Paterson JM, Mulcahy DG, Gonzalez VL, Barbieri CG, DeMeo DP, Pabinger S, Van Stijn T, Clarke S, Ryder O, Edwards SV, Salzberg SL, Anderson L, Nelson N, Stone C. PMID: 32811988.
      View in: PubMed   Mentions:    Fields:    
    3. Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros. Curr Biol. 2020 Oct 05; 30(19):3871-3879.e7. Lord E, Dussex N, Kierczak M, Díez-Del-Molino D, Ryder OA, Stanton DWG, Gilbert MTP, Sánchez-Barreiro F, Zhang G, Sinding MS, Lorenzen ED, Willerslev E, Protopopov A, Shidlovskiy F, Fedorov S, Bocherens H, Nathan SKSS, Goossens B, van der Plicht J, Chan YL, Prost S, Potapova O, Kirillova I, Lister AM, Heintzman PD, Kapp JD, Shapiro B, Vartanyan S, Götherström A, Dalén L. PMID: 32795436.
      View in: PubMed   Mentions:    Fields:    
    4. The tuatara genome reveals ancient features of amniote evolution. Nature. 2020 08; 584(7821):403-409. Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, Martin FJ, Flicek P, Petersen B, Kang L, Michalak P, Buckley TR, Wilson M, Cheng Y, Miller H, Schott RK, Jordan MD, Newcomb RD, Arroyo JI, Valenzuela N, Hore TA, Renart J, Peona V, Peart CR, Warmuth VM, Zeng L, Kortschak RD, Raison JM, Zapata VV, Wu Z, Santesmasses D, Mariotti M, Guigó R, Rupp SM, Twort VG, Dussex N, Taylor H, Abe H, Bond DM, Paterson JM, Mulcahy DG, Gonzalez VL, Barbieri CG, DeMeo DP, Pabinger S, Van Stijn T, Clarke S, Ryder O, Edwards SV, Salzberg SL, Anderson L, Nelson N, Stone C. PMID: 32760000.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    5. Interspecific gene flow and the evolution of specialisation in black and white rhinoceros. Mol Biol Evol. 2020 Jun 25. Moodley Y, Westbury MV, Russo IM, Gopalakrishnan S, Rakotoarivelo A, Olsen RA, Prost S, Tunstall T, Ryder OA, Dalén L, Bruford MW. PMID: 32585004.
      View in: PubMed   Mentions:    Fields:    
    6. Ampliconic Genes on the Great Ape Y Chromosomes: Rapid Evolution of Copy Number but Conservation of Expression Levels. Genome Biol Evol. 2020 Jun 01; 12(6):842-859. Vegesna R, Tomaszkiewicz M, Ryder OA, Campos-Sánchez R, Medvedev P, DeGiorgio M, Makova KD. PMID: 32374870.
      View in: PubMed   Mentions:    Fields:    
    7. A draft genome assembly of spotted hyena, Crocuta crocuta. Sci Data. 2020 04 28; 7(1):126. Yang C, Li F, Xiong Z, Koepfli KP, Ryder O, Perelman P, Li Q, Zhang G. PMID: 32345970.
      View in: PubMed   Mentions:    Fields:    
    8. Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates. bioRxiv. 2020 Apr 18. Damas J, Hughes GM, Keough KC, Painter CA, Persky NS, Corbo M, Hiller M, Koepfli KP, Pfenning AR, Zhao H, Genereux DP, Swofford R, Pollard KS, Ryder OA, Nweeia MT, Lindblad-Toh K, Teeling EC, Karlsson EK, Lewin HA. PMID: 32511356.
      View in: PubMed   Mentions:
    9. Assessing possible hybridization among managed Nubian ibex in North America. Zoo Biol. 2020 Mar; 39(2):121-128. Putnam AS, Nguyen TN, Mott A, Korody ML, Ryder OA. PMID: 31833594.
      View in: PubMed   Mentions:    Fields:    
    10. Contemporary Demographic Reconstruction Methods Are Robust to Genome Assembly Quality: A Case Study in Tasmanian Devils. Mol Biol Evol. 2019 12 01; 36(12):2906-2921. Patton AH, Margres MJ, Stahlke AR, Hendricks S, Lewallen K, Hamede RK, Ruiz-Aravena M, Ryder O, McCallum HI, Jones ME, Hohenlohe PA, Storfer A. PMID: 31424552.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    11. Precision nomenclature for the new genomics. Gigascience. 2019 08 01; 8(8). Lewin HA, Graves JAM, Ryder OA, Graphodatsky AS, O'Brien SJ. PMID: 31437278.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    12. An integrated chromosome-scale genome assembly of the Masai giraffe (Giraffa camelopardalis tippelskirchi). Gigascience. 2019 08 01; 8(8). Farré M, Li Q, Darolti I, Zhou Y, Damas J, Proskuryakova AA, Kulemzina AI, Chemnick LG, Kim J, Ryder OA, Ma J, Graphodatsky AS, Zhang G, Larkin DM, Lewin HA. PMID: 31367745.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    13. Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards. Nat Ecol Evol. 2019 08; 3(8):1241-1252. Lind AL, Lai YYY, Mostovoy Y, Holloway AK, Iannucci A, Mak ACY, Fondi M, Orlandini V, Eckalbar WL, Milan M, Rovatsos M, Kichigin IG, Makunin AI, Johnson Pokorná M, Altmanová M, Trifonov VA, Schijlen E, Kratochvíl L, Fani R, Velenský P, Rehák I, Patarnello T, Jessop TS, Hicks JW, Ryder OA, Mendelson JR, Ciofi C, Kwok PY, Pollard KS, Bruneau BG. PMID: 31358948.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    14. Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits. Science. 2019 06 21; 364(6446). Chen L, Qiu Q, Jiang Y, Wang K, Lin Z, Li Z, Bibi F, Yang Y, Wang J, Nie W, Su W, Liu G, Li Q, Fu W, Pan X, Liu C, Yang J, Zhang C, Yin Y, Wang Y, Zhao Y, Zhang C, Wang Z, Qin Y, Liu W, Wang B, Ren Y, Zhang R, Zeng Y, da Fonseca RR, Wei B, Li R, Wan W, Zhao R, Zhu W, Wang Y, Duan S, Gao Y, Zhang YE, Chen C, Hvilsom C, Epps CW, Chemnick LG, Dong Y, Mirarab S, Siegismund HR, Ryder OA, Gilbert MTP, Lewin HA, Zhang G, Heller R, Wang W. PMID: 31221828.
      View in: PubMed   Mentions: 14     Fields:    Translation:Animals
    15. Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations. G3 (Bethesda). 2019 06 05; 9(6):1785-1793. Koepfli KP, Tamazian G, Wildt D, Dobrynin P, Kim C, Frandsen PB, Godinho R, Yurchenko AA, Komissarov A, Krasheninnikova K, Kliver S, Kolchanova S, Gonçalves M, Carneiro M, Pinto PV, Ferrand N, Maldonado JE, Ferrie GM, Chemnick L, Ryder OA, Johnson WE, Comizzoli P, O'Brien SJ, Pukazhenthi BS. PMID: 31000506.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    16. Data gaps and opportunities for comparative and conservation biology. Proc Natl Acad Sci U S A. 2019 05 07; 116(19):9658-9664. Conde DA, Staerk J, Colchero F, da Silva R, Schöley J, Baden HM, Jouvet L, Fa JE, Syed H, Jongejans E, Meiri S, Gaillard JM, Chamberlain S, Wilcken J, Jones OR, Dahlgren JP, Steiner UK, Bland LM, Gomez-Mestre I, Lebreton JD, González Vargas J, Flesness N, Canudas-Romo V, Salguero-Gómez R, Byers O, Berg TB, Scheuerlein A, Devillard S, Schigel DS, Ryder OA, Possingham HP, Baudisch A, Vaupel JW. PMID: 31004061.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    17. Editorial. J Hered. 2019 03 05; 110(2):257-259. Ryder OA. PMID: 31222255.
      View in: PubMed   Mentions:    Fields:    
    18. Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks. Genome Res. 2019 04; 29(4):576-589. Farré M, Kim J, Proskuryakova AA, Zhang Y, Kulemzina AI, Li Q, Zhou Y, Xiong Y, Johnson JL, Perelman PL, Johnson WE, Warren WC, Kukekova AV, Zhang G, O'Brien SJ, Ryder OA, Graphodatsky AS, Ma J, Lewin HA, Larkin DM. PMID: 30760546.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    19. A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert. Gigascience. 2019 02 01; 8(2). Farré M, Li Q, Zhou Y, Damas J, Chemnick LG, Kim J, Ryder OA, Ma J, Zhang G, Larkin DM, Lewin HA. PMID: 30649288.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    20. Contrasting evolutionary history, anthropogenic declines and genetic contact in the northern and southern white rhinoceros (Ceratotherium simum). Proc Biol Sci. 2018 11 07; 285(1890). Moodley Y, Russo IM, Robovský J, Dalton DL, Kotzé A, Smith S, Stejskal J, Ryder OA, Hermes R, Walzer C, Bruford MW. PMID: 30404873.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    21. A High-Quality, Long-Read De Novo Genome Assembly to Aid Conservation of Hawaii's Last Remaining Crow Species. Genes (Basel). 2018 Aug 01; 9(8). Sutton JT, Helmkampf M, Steiner CC, Bellinger MR, Korlach J, Hall R, Baybayan P, Muehling J, Gu J, Kingan S, Masuda BM, Ryder OA. PMID: 30071683.
      View in: PubMed   Mentions: 2     Fields:    
    22. Genetic Structure and Diversity Among Historic and Modern Populations of the Sumatran Rhinoceros (Dicerorhinus sumatrensis). J Hered. 2018 06 27; 109(5):553-565. Brandt JR, van Coeverden de Groot PJ, Witt KE, Engelbrektsson PK, Helgen KM, Malhi RS, Ryder OA, Roca AL. PMID: 29684146.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    23. The Case of X and Y Localization of Nucleolus Organizer Regions (NORs) in Tragulus javanicus (Cetartiodactyla, Mammalia). Genes (Basel). 2018 Jun 20; 9(6). Proskuryakova AA, Kulemzina AI, Perelman PL, Serdukova NA, Ryder OA, Graphodatsky AS. PMID: 29925822.
      View in: PubMed   Mentions: 1     Fields:    
    24. Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells. Genome Res. 2018 06; 28(6):780-788. Tunstall T, Kock R, Vahala J, Diekhans M, Fiddes I, Armstrong J, Paten B, Ryder OA, Steiner CC. PMID: 29798851.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    25. A comprehensive genomic history of extinct and living elephants. Proc Natl Acad Sci U S A. 2018 03 13; 115(11):E2566-E2574. Palkopoulou E, Lipson M, Mallick S, Nielsen S, Rohland N, Baleka S, Karpinski E, Ivancevic AM, To TH, Kortschak RD, Raison JM, Qu Z, Chin TJ, Alt KW, Claesson S, Dalén L, MacPhee RDE, Meller H, Roca AL, Ryder OA, Heiman D, Young S, Breen M, Williams C, Aken BL, Ruffier M, Karlsson E, Johnson J, Di Palma F, Alfoldi J, Adelson DL, Mailund T, Munch K, Lindblad-Toh K, Hofreiter M, Poinar H, Reich D. PMID: 29483247.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    26. Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat. Nat Ecol Evol. 2018 04; 2(4):659-668. Zepeda Mendoza ML, Xiong Z, Escalera-Zamudio M, Runge AK, Thézé J, Streicker D, Frank HK, Loza-Rubio E, Liu S, Ryder OA, Samaniego Castruita JA, Katzourakis A, Pacheco G, Taboada B, Löber U, Pybus OG, Li Y, Rojas-Anaya E, Bohmann K, Carmona Baez A, Arias CF, Liu S, Greenwood AD, Bertelsen MF, White NE, Bunce M, Zhang G, Sicheritz-Pontén T, Gilbert MPT. PMID: 29459707.
      View in: PubMed   Mentions: 19     Fields:    Translation:Animals
    27. Viable Cell Culture Banking for Biodiversity Characterization and Conservation. Annu Rev Anim Biosci. 2018 02 15; 6:83-98. Ryder OA, Onuma M. PMID: 29447472.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    28. Draft genome of the milu (Elaphurus davidianus). Gigascience. 2018 02 01; 7(2). Zhang C, Chen L, Zhou Y, Wang K, Chemnick LG, Ryder OA, Wang W, Zhang G, Qiu Q. PMID: 29267854.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    29. X Chromosome Evolution in Cetartiodactyla. Genes (Basel). 2017 Aug 31; 8(9). Proskuryakova AA, Kulemzina AI, Perelman PL, Makunin AI, Larkin DM, Farré M, Kukekova AV, Lynn Johnson J, Lemskaya NA, Beklemisheva VR, Roelke-Parker ME, Bellizzi J, Ryder OA, O'Brien SJ, Graphodatsky AS. PMID: 28858207.
      View in: PubMed   Mentions: 6     Fields:    
    30. Large numbers of vertebrates began rapid population decline in the late 19th century. Proc Natl Acad Sci U S A. 2016 12 06; 113(49):14079-14084. Li H, Xiang-Yu J, Dai G, Gu Z, Ming C, Yang Z, Ryder OA, Li WH, Fu YX, Zhang YP. PMID: 27872315.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    31. Genomic analysis of snub-nosed monkeys (Rhinopithecus) identifies genes and processes related to high-altitude adaptation. Nat Genet. 2016 08; 48(8):947-52. Yu L, Wang GD, Ruan J, Chen YB, Yang CP, Cao X, Wu H, Liu YH, Du ZL, Wang XP, Yang J, Cheng SC, Zhong L, Wang L, Wang X, Hu JY, Fang L, Bai B, Wang KL, Yuan N, Wu SF, Li BG, Zhang JG, Yang YQ, Zhang CL, Long YC, Li HS, Yang JY, Irwin DM, Ryder OA, Li Y, Wu CI, Zhang YP. PMID: 27399969.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    32. Applying SNP-Derived Molecular Coancestry Estimates to Captive Breeding Programs. J Hered. 2016 Sep; 107(5):403-12. Ivy JA, Putnam AS, Navarro AY, Gurr J, Ryder OA. PMID: 27208150.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    33. Rewinding the process of mammalian extinction. Zoo Biol. 2016 Jul; 35(4):280-92. Saragusty J, Diecke S, Drukker M, Durrant B, Friedrich Ben-Nun I, Galli C, Göritz F, Hayashi K, Hermes R, Holtze S, Johnson S, Lazzari G, Loi P, Loring JF, Okita K, Renfree MB, Seet S, Voracek T, Stejskal J, Ryder OA, Hildebrandt TB. PMID: 27142508.
      View in: PubMed   Mentions: 13     Fields:    Translation:Animals
    34. The Use of Genomics in Conservation Management of the Endangered Visayan Warty Pig (Sus cebifrons). Int J Genomics. 2016; 2016:5613862. Nuijten RJ, Bosse M, Crooijmans RP, Madsen O, Schaftenaar W, Ryder OA, Groenen MA, Megens HJ. PMID: 27069913.
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    35. A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y. Genome Res. 2016 Apr; 26(4):530-40. Tomaszkiewicz M, Rangavittal S, Cechova M, Campos Sanchez R, Fescemyer HW, Harris R, Ye D, O'Brien PC, Chikhi R, Ryder OA, Ferguson-Smith MA, Medvedev P, Makova KD. PMID: 26934921.
      View in: PubMed   Mentions: 20     Fields:    Translation:HumansAnimalsCells
    36. Derivation of induced pluripotent stem cells from orangutan skin fibroblasts. BMC Res Notes. 2015 Oct 16; 8:577. Ramaswamy K, Yik WY, Wang XM, Oliphant EN, Lu W, Shibata D, Ryder OA, Hacia JG. PMID: 26475477.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansAnimalsCells
    37. Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse. Curr Biol. 2015 Oct 05; 25(19):2577-83. Der Sarkissian C, Ermini L, Schubert M, Yang MA, Librado P, Fumagalli M, Jónsson H, Bar-Gal GK, Albrechtsen A, Vieira FG, Petersen B, Ginolhac A, Seguin-Orlando A, Magnussen K, Fages A, Gamba C, Lorente-Galdos B, Polani S, Steiner C, Neuditschko M, Jagannathan V, Feh C, Greenblatt CL, Ludwig A, Abramson NI, Zimmermann W, Schafberg R, Tikhonov A, Sicheritz-Ponten T, Willerslev E, Marques-Bonet T, Ryder OA, McCue M, Rieder S, Leeb T, Slatkin M, Orlando L. PMID: 26412128.
      View in: PubMed   Mentions: 37     Fields:    Translation:Animals
    38. A Road Map for 21st Century Genetic Restoration: Gene Pool Enrichment of the Black-Footed Ferret. J Hered. 2015 Sep-Oct; 106(5):581-92. Wisely SM, Ryder OA, Santymire RM, Engelhardt JF, Novak BJ. PMID: 26304983.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    39. Using genome-wide measures of coancestry to maintain diversity and fitness in endangered and domestic pig populations. Genome Res. 2015 Jul; 25(7):970-81. Bosse M, Megens HJ, Madsen O, Crooijmans RP, Ryder OA, Austerlitz F, Groenen MA, de Cara MA. PMID: 26063737.
      View in: PubMed   Mentions: 21     Fields:    Translation:Animals
    40. Chromosomal variation and perinatal mortality in San Diego zoo Soemmerring's gazelles. Zoo Biol. 2015 Jul-Aug; 34(4):374-84. Steiner CC, Charter SJ, Goddard N, Davis H, Brandt M, Houck ML, Ryder OA. PMID: 26011774.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    41. Generation of Induced Pluripotent Stem Cells from Mammalian Endangered Species. Methods Mol Biol. 2015; 1330:101-9. Ben-Nun IF, Montague SC, Houck ML, Ryder O, Loring JF. PMID: 26621593.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    42. Inference of gorilla demographic and selective history from whole-genome sequence data. Mol Biol Evol. 2015 Mar; 32(3):600-12. McManus KF, Kelley JL, Song S, Veeramah KR, Woerner AE, Stevison LS, Ryder OA, Ape Genome Project G, Kidd JM, Wall JD, Bustamante CD, Hammer MF. PMID: 25534031.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimals
    43. Whole-genome analyses resolve early branches in the tree of life of modern birds. Science. 2014 Dec 12; 346(6215):1320-31. Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G. PMID: 25504713.
      View in: PubMed   Mentions: 341     Fields:    Translation:AnimalsCells
    44. The birds of Genome10K. Gigascience. 2014; 3(1):32. OBrien SJ, Haussler D, Ryder O. PMID: 25685332.
      View in: PubMed   Mentions: 3     Fields:    
    45. Comparative genomics reveals insights into avian genome evolution and adaptation. Science. 2014 Dec 12; 346(6215):1311-20. Zhang G, Li C, Li Q, Li B, Larkin DM, Lee C, Storz JF, Antunes A, Greenwold MJ, Meredith RW, Ödeen A, Cui J, Zhou Q, Xu L, Pan H, Wang Z, Jin L, Zhang P, Hu H, Yang W, Hu J, Xiao J, Yang Z, Liu Y, Xie Q, Yu H, Lian J, Wen P, Zhang F, Li H, Zeng Y, Xiong Z, Liu S, Zhou L, Huang Z, An N, Wang J, Zheng Q, Xiong Y, Wang G, Wang B, Wang J, Fan Y, da Fonseca RR, Alfaro-Núñez A, Schubert M, Orlando L, Mourier T, Howard JT, Ganapathy G, Pfenning A, Whitney O, Rivas MV, Hara E, Smith J, Farré M, Narayan J, Slavov G, Romanov MN, Borges R, Machado JP, Khan I, Springer MS, Gatesy J, Hoffmann FG, Opazo JC, Håstad O, Sawyer RH, Kim H, Kim KW, Kim HJ, Cho S, Li N, Huang Y, Bruford MW, Zhan X, Dixon A, Bertelsen MF, Derryberry E, Warren W, Wilson RK, Li S, Ray DA, Green RE, O'Brien SJ, Griffin D, Johnson WE, Haussler D, Ryder OA, Willerslev E, Graves GR, Alström P, Fjeldså J, Mindell DP, Edwards SV, Braun EL, Rahbek C, Burt DW, Houde P, Zhang Y, Yang H, Wang J, Jarvis ED, Gilbert MT, Wang J. PMID: 25504712.
      View in: PubMed   Mentions: 231     Fields:    Translation:AnimalsCells
    46. Evolutionary and functional novelty of pancreatic ribonuclease: a study of Musteloidea (order Carnivora). Sci Rep. 2014 May 27; 4:5070. Liu J, Wang XP, Cho S, Lim BK, Irwin DM, Ryder OA, Zhang YP, Yu L. PMID: 24861105.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    47. Molecular phylogeny and chromosomal evolution of Alcelaphini (Antilopinae). J Hered. 2014 May-Jun; 105(3):324-33. Steiner CC, Charter SJ, Houck ML, Ryder OA. PMID: 24516191.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    48. Great ape genetic diversity and population history. Nature. 2013 Jul 25; 499(7459):471-5. Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, Hobolth A, Halager AE, Malig M, Hernandez-Rodriguez J, Hernando-Herraez I, Prüfer K, Pybus M, Johnstone L, Lachmann M, Alkan C, Twigg D, Petit N, Baker C, Hormozdiari F, Fernandez-Callejo M, Dabad M, Wilson ML, Stevison L, Camprubí C, Carvalho T, Ruiz-Herrera A, Vives L, Mele M, Abello T, Kondova I, Bontrop RE, Pusey A, Lankester F, Kiyang JA, Bergl RA, Lonsdorf E, Myers S, Ventura M, Gagneux P, Comas D, Siegismund H, Blanc J, Agueda-Calpena L, Gut M, Fulton L, Tishkoff SA, Mullikin JC, Wilson RK, Gut IG, Gonder MK, Ryder OA, Hahn BH, Navarro A, Akey JM, Bertranpetit J, Reich D, Mailund T, Schierup MH, Hvilsom C, Andrés AM, Wall JD, Bustamante CD, Hammer MF, Eichler EE, Marques-Bonet T. PMID: 23823723.
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    49. Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse. Nature. 2013 Jul 04; 499(7456):74-8. Orlando L, Ginolhac A, Zhang G, Froese D, Albrechtsen A, Stiller M, Schubert M, Cappellini E, Petersen B, Moltke I, Johnson PL, Fumagalli M, Vilstrup JT, Raghavan M, Korneliussen T, Malaspinas AS, Vogt J, Szklarczyk D, Kelstrup CD, Vinther J, Dolocan A, Stenderup J, Velazquez AM, Cahill J, Rasmussen M, Wang X, Min J, Zazula GD, Seguin-Orlando A, Mortensen C, Magnussen K, Thompson JF, Weinstock J, Gregersen K, Røed KH, Eisenmann V, Rubin CJ, Miller DC, Antczak DF, Bertelsen MF, Brunak S, Al-Rasheid KA, Ryder O, Andersson L, Mundy J, Krogh A, Gilbert MT, Kjær K, Sicheritz-Ponten T, Jensen LJ, Olsen JV, Hofreiter M, Nielsen R, Shapiro B, Wang J, Willerslev E. PMID: 23803765.
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    50. Characterization of Prdm9 in equids and sterility in mules. PLoS One. 2013; 8(4):e61746. Steiner CC, Ryder OA. PMID: 23613924.
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    51. Diverse captive non-human primates with phytanic acid-deficient diets rich in plant products have substantial phytanic acid levels in their red blood cells. Lipids Health Dis. 2013 Feb 04; 12:10. Moser AB, Hey J, Dranchak PK, Karaman MW, Zhao J, Cox LA, Ryder OA, Hacia JG. PMID: 23379307.
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    52. Conservation genomics of threatened animal species. Annu Rev Anim Biosci. 2013 Jan; 1:261-81. Steiner CC, Putnam AS, Hoeck PE, Ryder OA. PMID: 25387020.
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    53. Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix. PLoS One. 2012; 7(11):e49521. Springer MS, Meredith RW, Gatesy J, Emerling CA, Park J, Rabosky DL, Stadler T, Steiner C, Ryder OA, Janecka JE, Fisher CA, Murphy WJ. PMID: 23166696.
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    54. Incorporating indels as phylogenetic characters: impact for interfamilial relationships within Arctoidea (Mammalia: Carnivora). Mol Phylogenet Evol. 2013 Mar; 66(3):748-56. Luan PT, Ryder OA, Davis H, Zhang YP, Yu L. PMID: 23147269.
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    55. IOD in rhinos--epidemiology group report: report from the Epidemiology Working Group of the International Workshop on Iron Overload Disorder in Browsing Rhinoceros (February 2011). J Zoo Wildl Med. 2012 Sep; 43(3 Suppl):S114-6. Dennis P, Ellis S, Mellen J, Lee P, Olea-Popelka F, Petric A, Ryder O. PMID: 23156714.
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    56. Molecular phylogeny of extant equids and effects of ancestral polymorphism in resolving species-level phylogenies. Mol Phylogenet Evol. 2012 Nov; 65(2):573-81. Steiner CC, Mitelberg A, Tursi R, Ryder OA. PMID: 22846684.
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    57. Tissue sampling methods and standards for vertebrate genomics. Gigascience. 2012 Jul 12; 1(1):8. Wong PB, Wiley EO, Johnson WE, Ryder OA, O'Brien SJ, Haussler D, Koepfli KP, Houck ML, Perelman P, Mastromonaco G, Bentley AC, Venkatesh B, Zhang YP, Murphy RW. PMID: 23587255.
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    58. Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers. Mob DNA. 2012 Apr 30; 3:8. Walker JA, Konkel MK, Ullmer B, Monceaux CP, Ryder OA, Hubley R, Smit AF, Batzer MA. PMID: 22541534.
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    60. Insights into hominid evolution from the gorilla genome sequence. Nature. 2012 Mar 07; 483(7388):169-75. Scally A, Dutheil JY, Hillier LW, Jordan GE, Goodhead I, Herrero J, Hobolth A, Lappalainen T, Mailund T, Marques-Bonet T, McCarthy S, Montgomery SH, Schwalie PC, Tang YA, Ward MC, Xue Y, Yngvadottir B, Alkan C, Andersen LN, Ayub Q, Ball EV, Beal K, Bradley BJ, Chen Y, Clee CM, Fitzgerald S, Graves TA, Gu Y, Heath P, Heger A, Karakoc E, Kolb-Kokocinski A, Laird GK, Lunter G, Meader S, Mort M, Mullikin JC, Munch K, O'Connor TD, Phillips AD, Prado-Martinez J, Rogers AS, Sajjadian S, Schmidt D, Shaw K, Simpson JT, Stenson PD, Turner DJ, Vigilant L, Vilella AJ, Whitener W, Zhu B, Cooper DN, de Jong P, Dermitzakis ET, Eichler EE, Flicek P, Goldman N, Mundy NI, Ning Z, Odom DT, Ponting CP, Quail MA, Ryder OA, Searle SM, Warren WC, Wilson RK, Schierup MH, Rogers J, Tyler-Smith C, Durbin R. PMID: 22398555.
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    62. Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification. Science. 2011 Oct 28; 334(6055):521-4. Meredith RW, Janecka JE, Gatesy J, Ryder OA, Fisher CA, Teeling EC, Goodbla A, Eizirik E, Simão TL, Stadler T, Rabosky DL, Honeycutt RL, Flynn JJ, Ingram CM, Steiner C, Williams TL, Robinson TJ, Burk-Herrick A, Westerman M, Ayoub NA, Springer MS, Murphy WJ. PMID: 21940861.
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    63. Induced pluripotent stem cells from highly endangered species. Nat Methods. 2011 Sep 04; 8(10):829-31. Ben-Nun IF, Montague SC, Houck ML, Tran HT, Garitaonandia I, Leonardo TR, Wang YC, Charter SJ, Laurent LC, Ryder OA, Loring JF. PMID: 21892153.
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    64. Copy number variation analysis in the great apes reveals species-specific patterns of structural variation. Genome Res. 2011 Oct; 21(10):1626-39. Gazave E, Darré F, Morcillo-Suarez C, Petit-Marty N, Carreño A, Marigorta UM, Ryder OA, Blancher A, Rocchi M, Bosch E, Baker C, Marquès-Bonet T, Eichler EE, Navarro A. PMID: 21824994.
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    65. A massively parallel sequencing approach uncovers ancient origins and high genetic variability of endangered Przewalski's horses. Genome Biol Evol. 2011; 3:1096-106. Goto H, Ryder OA, Fisher AR, Schultz B, Kosakovsky Pond SL, Nekrutenko A, Makova KD. PMID: 21803766.
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    66. Human and great ape red blood cells differ in plasmalogen levels and composition. Lipids Health Dis. 2011 Jun 17; 10:101. Moser AB, Steinberg SJ, Watkins PA, Moser HW, Ramaswamy K, Siegmund KD, Lee DR, Ely JJ, Ryder OA, Hacia JG. PMID: 21679470.
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    67. Comparative biology of mammalian telomeres: hypotheses on ancestral states and the roles of telomeres in longevity determination. Aging Cell. 2011 Oct; 10(5):761-8. Gomes NM, Ryder OA, Houck ML, Charter SJ, Walker W, Forsyth NR, Austad SN, Venditti C, Pagel M, Shay JW, Wright WE. PMID: 21518243.
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    68. On the phylogeny of Mustelidae subfamilies: analysis of seventeen nuclear non-coding loci and mitochondrial complete genomes. BMC Evol Biol. 2011 Apr 10; 11:92. Yu L, Peng D, Liu J, Luan P, Liang L, Lee H, Lee M, Ryder OA, Zhang Y. PMID: 21477367.
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    69. Chromosome painting in Tragulidae facilitates the reconstruction of Ruminantia ancestral karyotype. Chromosome Res. 2011 May; 19(4):531-9. Kulemzina AI, Yang F, Trifonov VA, Ryder OA, Ferguson-Smith MA, Graphodatsky AS. PMID: 21445689.
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    70. Comparative and demographic analysis of orang-utan genomes. Nature. 2011 Jan 27; 469(7331):529-33. Locke DP, Hillier LW, Warren WC, Worley KC, Nazareth LV, Muzny DM, Yang SP, Wang Z, Chinwalla AT, Minx P, Mitreva M, Cook L, Delehaunty KD, Fronick C, Schmidt H, Fulton LA, Fulton RS, Nelson JO, Magrini V, Pohl C, Graves TA, Markovic C, Cree A, Dinh HH, Hume J, Kovar CL, Fowler GR, Lunter G, Meader S, Heger A, Ponting CP, Marques-Bonet T, Alkan C, Chen L, Cheng Z, Kidd JM, Eichler EE, White S, Searle S, Vilella AJ, Chen Y, Flicek P, Ma J, Raney B, Suh B, Burhans R, Herrero J, Haussler D, Faria R, Fernando O, Darré F, Farré D, Gazave E, Oliva M, Navarro A, Roberto R, Capozzi O, Archidiacono N, Della Valle G, Purgato S, Rocchi M, Konkel MK, Walker JA, Ullmer B, Batzer MA, Smit AF, Hubley R, Casola C, Schrider DR, Hahn MW, Quesada V, Puente XS, Ordoñez GR, López-Otín C, Vinar T, Brejova B, Ratan A, Harris RS, Miller W, Kosiol C, Lawson HA, Taliwal V, Martins AL, Siepel A, Roychoudhury A, Ma X, Degenhardt J, Bustamante CD, Gutenkunst RN, Mailund T, Dutheil JY, Hobolth A, Schierup MH, Ryder OA, Yoshinaga Y, de Jong PJ, Weinstock GM, Rogers J, Mardis ER, Gibbs RA, Wilson RK. PMID: 21270892.
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    71. Phylogenetic utility of nuclear introns in interfamilial relationships of Caniformia (order Carnivora). Syst Biol. 2011 Mar; 60(2):175-87. Yu L, Luan PT, Jin W, Ryder OA, Chemnick LG, Davis HA, Zhang YP. PMID: 21252386.
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    72. Genome-wide characterization of centromeric satellites from multiple mammalian genomes. Genome Res. 2011 Jan; 21(1):137-45. Alkan C, Cardone MF, Catacchio CR, Antonacci F, O'Brien SJ, Ryder OA, Purgato S, Zoli M, Della Valle G, Eichler EE, Ventura M. PMID: 21081712.
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    73. Species identification and chromosome variation of captive two-toed sloths. Zoo Biol. 2011 Nov-Dec; 30(6):623-35. Steiner CC, Houck ML, Ryder OA. PMID: 22147591.
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    74. Identification of differences in human and great ape phytanic acid metabolism that could influence gene expression profiles and physiological functions. BMC Physiol. 2010 Oct 08; 10:19. Watkins PA, Moser AB, Toomer CB, Steinberg SJ, Moser HW, Karaman MW, Ramaswamy K, Siegmund KD, Lee DR, Ely JJ, Ryder OA, Hacia JG. PMID: 20932325.
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    75. Detection of two distinct forms of apoC-I in great apes. Comp Biochem Physiol Part D Genomics Proteomics. 2010 Mar; 5(1):73-9. Puppione DL, Ryan CM, Bassilian S, Souda P, Xiao X, Ryder OA, Whitelegge JP. PMID: 20209111.
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    76. Molecular cytogenetics of the california condor: evolutionary and conservation implications. Cytogenet Genome Res. 2009; 127(1):26-32. Modi WS, Romanov M, Green ED, Ryder O. PMID: 20051671.
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    77. The sequence and de novo assembly of the giant panda genome. Nature. 2010 Jan 21; 463(7279):311-7. Li R, Fan W, Tian G, Zhu H, He L, Cai J, Huang Q, Cai Q, Li B, Bai Y, Zhang Z, Zhang Y, Wang W, Li J, Wei F, Li H, Jian M, Li J, Zhang Z, Nielsen R, Li D, Gu W, Yang Z, Xuan Z, Ryder OA, Leung FC, Zhou Y, Cao J, Sun X, Fu Y, Fang X, Guo X, Wang B, Hou R, Shen F, Mu B, Ni P, Lin R, Qian W, Wang G, Yu C, Nie W, Wang J, Wu Z, Liang H, Min J, Wu Q, Cheng S, Ruan J, Wang M, Shi Z, Wen M, Liu B, Ren X, Zheng H, Dong D, Cook K, Shan G, Zhang H, Kosiol C, Xie X, Lu Z, Zheng H, Li Y, Steiner CC, Lam TT, Lin S, Zhang Q, Li G, Tian J, Gong T, Liu H, Zhang D, Fang L, Ye C, Zhang J, Hu W, Xu A, Ren Y, Zhang G, Bruford MW, Li Q, Ma L, Guo Y, An N, Hu Y, Zheng Y, Shi Y, Li Z, Liu Q, Chen Y, Zhao J, Qu N, Zhao S, Tian F, Wang X, Wang H, Xu L, Liu X, Vinar T, Wang Y, Lam TW, Yiu SM, Liu S, Zhang H, Li D, Huang Y, Wang X, Yang G, Jiang Z, Wang J, Qin N, Li L, Li J, Bolund L, Kristiansen K, Wong GK, Olson M, Zhang X, Li S, Yang H, Wang J, Wang J. PMID: 20010809.
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    78. Phylogeny of horse chromosome 5q in the genus Equus and centromere repositioning. Cytogenet Genome Res. 2009; 126(1-2):165-72. Piras FM, Nergadze SG, Poletto V, Cerutti F, Ryder OA, Leeb T, Raimondi E, Giulotto E. PMID: 20016166.
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    80. Genome sequence, comparative analysis, and population genetics of the domestic horse. Science. 2009 Nov 06; 326(5954):865-7. Wade CM, Giulotto E, Sigurdsson S, Zoli M, Gnerre S, Imsland F, Lear TL, Adelson DL, Bailey E, Bellone RR, Blöcker H, Distl O, Edgar RC, Garber M, Leeb T, Mauceli E, MacLeod JN, Penedo MC, Raison JM, Sharpe T, Vogel J, Andersson L, Antczak DF, Biagi T, Binns MM, Chowdhary BP, Coleman SJ, Della Valle G, Fryc S, Guérin G, Hasegawa T, Hill EW, Jurka J, Kiialainen A, Lindgren G, Liu J, Magnani E, Mickelson JR, Murray J, Nergadze SG, Onofrio R, Pedroni S, Piras MF, Raudsepp T, Rocchi M, Røed KH, Ryder OA, Searle S, Skow L, Swinburne JE, Syvänen AC, Tozaki T, Valberg SJ, Vaudin M, White JR, Zody MC, Lander ES, Lindblad-Toh K. PMID: 19892987.
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    81. Molecular decay of the tooth gene Enamelin (ENAM) mirrors the loss of enamel in the fossil record of placental mammals. PLoS Genet. 2009 Sep; 5(9):e1000634. Meredith RW, Gatesy J, Murphy WJ, Ryder OA, Springer MS. PMID: 19730686.
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    82. Forests of the night: refugia of genetic diversity in wild tigers. PLoS Genet. 2009 Aug; 5(8):e1000603. Ryder OA. PMID: 19680440.
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    83. The value of avian genomics to the conservation of wildlife. BMC Genomics. 2009 Jul 14; 10 Suppl 2:S10. Romanov MN, Tuttle EM, Houck ML, Modi WS, Chemnick LG, Korody ML, Mork EM, Otten CA, Renner T, Jones KC, Dandekar S, Papp JC, Da Y, Green ED, Magrini V, Hickenbotham MT, Glasscock J, McGrath S, Mardis ER, Ryder OA. PMID: 19607652.
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    84. Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements. Gene. 2009 Dec 15; 448(2):242-9. Li J, Han K, Xing J, Kim HS, Rogers J, Ryder OA, Disotell T, Yue B, Batzer MA. PMID: 19497354.
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    85. Isolation and characterization of 23 polymorphic microsatellite loci for a West Indian iguana (Cyclura pinguis) from the British Virgin Islands. Mol Ecol Resour. 2009 Sep; 9(5):1412-4. Lau J, Alberts AC, Chemnick LG, Gerber GP, Jones KC, Mitchell AA, Ryder OA. PMID: 21564923.
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    86. A chromosomal inversion unique to the northern white-cheeked gibbon. PLoS One. 2009; 4(3):e4999. Carbone L, Mootnick AR, Nadler T, Moisson P, Ryder O, Roos C, de Jong PJ. PMID: 19319194.
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    87. Cryobanking of viable biomaterials: implementation of new strategies for conservation purposes. Mol Ecol. 2009 Mar; 18(6):1030-3. Lermen D, Blömeke B, Browne R, Clarke A, Dyce PW, Fixemer T, Fuhr GR, Holt WV, Jewgenow K, Lloyd RE, Lötters S, Paulus M, Reid GM, Rapoport DH, Rawson D, Ringleb J, Ryder OA, Spörl G, Schmitt T, Veith M, Müller P. PMID: 19207252.
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    88. Sequencing primate genomes: what have we learned? Annu Rev Genomics Hum Genet. 2009; 10:355-86. Marques-Bonet T, Ryder OA, Eichler EE. PMID: 19630567.
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    89. Horse domestication and conservation genetics of Przewalski's horse inferred from sex chromosomal and autosomal sequences. Mol Biol Evol. 2009 Jan; 26(1):199-208. Lau AN, Peng L, Goto H, Chemnick L, Ryder OA, Makova KD. PMID: 18931383.
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    90. New insights into the evolution of intronic sequences of the beta-fibrinogen gene and their application in reconstructing mustelid phylogeny. Zoolog Sci. 2008 Jun; 25(6):662-72. Yu L, Liu J, Luan PT, Lee H, Lee M, Min MS, Ryder OA, Chemnick L, Davis H, Zhang YP. PMID: 18624576.
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    91. Analysis of complete mitochondrial genome sequences increases phylogenetic resolution of bears (Ursidae), a mammalian family that experienced rapid speciation. BMC Evol Biol. 2007 Oct 24; 7:198. Yu L, Li YW, Ryder OA, Zhang YP. PMID: 17956639.
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    92. Gallus GBrowse: a unified genomic database for the chicken. Nucleic Acids Res. 2008 Jan; 36(Database issue):D719-23. Schmidt CJ, Romanov M, Ryder O, Magrini V, Hickenbotham M, Glasscock J, McGrath S, Mardis E, Stein LD. PMID: 17933775.
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    93. Primate TNF promoters reveal markers of phylogeny and evolution of innate immunity. PLoS One. 2007 Jul 18; 2(7):e621. Baena A, Mootnick AR, Falvo JV, Tsytskova AV, Ligeiro F, Diop OM, Brieva C, Gagneux P, O'Brien SJ, Ryder OA, Goldfeld AE. PMID: 17637837.
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    94. Construction of a California condor BAC library and first-generation chicken-condor comparative physical map as an endangered species conservation genomics resource. Genomics. 2006 Dec; 88(6):711-718. Romanov MN, Koriabine M, Nefedov M, de Jong PJ, Ryder OA. PMID: 16884891.
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    95. Sonic Hedgehog, a key development gene, experienced intensified molecular evolution in primates. Hum Mol Genet. 2006 Jul 01; 15(13):2031-7. Dorus S, Anderson JR, Vallender EJ, Gilbert SL, Zhang L, Chemnick LG, Ryder OA, Li W, Lahn BT. PMID: 16687440.
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    96. A mobile element based phylogeny of Old World monkeys. Mol Phylogenet Evol. 2005 Dec; 37(3):872-80. Xing J, Wang H, Han K, Ray DA, Huang CH, Chemnick LG, Stewart CB, Disotell TR, Ryder OA, Batzer MA. PMID: 15936216.
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    97. Karyotypic evolution of a novel cervid satellite DNA family isolated by microdissection from the Indian muntjac Y-chromosome. Chromosoma. 2005 May; 114(1):28-38. Li YC, Cheng YM, Hsieh LJ, Ryder OA, Yang F, Liao SJ, Hsiao KM, Tsai FJ, Tsai CH, Lin CC. PMID: 15827746.
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    99. Conservation genomics: applying whole genome studies to species conservation efforts. Cytogenet Genome Res. 2005; 108(1-3):6-15. Ryder OA. PMID: 15545710.
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    100. Phylogenetic relationships within mammalian order Carnivora indicated by sequences of two nuclear DNA genes. Mol Phylogenet Evol. 2004 Dec; 33(3):694-705. Yu L, Li QW, Ryder OA, Zhang YP. PMID: 15522797.
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    101. Evolution of the tandem repeats in thymidylate synthase enhancer region (TSER) in primates. Gene. 2004 Aug 18; 338(1):47-54. Zhang YW, Luo HR, Ryder OA, Zhang YP. PMID: 15302405.
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    103. A prevalent POLG CAG microsatellite length allele in humans and African great apes. Mamm Genome. 2004 Jun; 15(6):492-502. Rovio AT, Abel J, Ahola AL, Andres AM, Bertranpetit J, Blancher A, Bontrop RE, Chemnick LG, Cooke HJ, Cummins JM, Davis HA, Elliott DJ, Fritsche E, Hargreave TB, Hoffman SM, Jequier AM, Kao SH, Kim HS, Marchington DR, Mehmet D, Otting N, Poulton J, Ryder OA, Schuppe HC, Takenaka O, Wei YH, Wichmann L, Jacobs HT. PMID: 15181541.
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    104. A population genetic comparison of argali sheep (Ovis ammon) in Mongolia using the ND5 gene of mitochondrial DNA; implications for conservation. Mol Ecol. 2004 May; 13(5):1333-9. Tserenbataa T, Ramey RR, Ryder OA, Quinn TW, Reading RP. PMID: 15078469.
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    105. The genetic architecture of selection at the human dopamine receptor D4 (DRD4) gene locus. Am J Hum Genet. 2004 May; 74(5):931-44. Wang E, Ding YC, Flodman P, Kidd JR, Kidd KK, Grady DL, Ryder OA, Spence MA, Swanson JM, Moyzis RK. PMID: 15077199.
      View in: PubMed   Mentions: 99     Fields:    Translation:HumansCells
    106. Nucleotide diversity in gorillas. Genetics. 2004 Mar; 166(3):1375-83. Yu N, Jensen-Seaman MI, Chemnick L, Ryder O, Li WH. PMID: 15082556.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    107. Refined genome-wide comparative map of the domestic horse, donkey and human based on cross-species chromosome painting: insight into the occasional fertility of mules. Chromosome Res. 2004; 12(1):65-76. Yang F, Fu B, O'Brien PC, Nie W, Ryder OA, Ferguson-Smith MA. PMID: 14984103.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansAnimalsCells
    108. Intra- and interspecific variation of the CCR5 gene in higher primates. Mol Biol Evol. 2003 Oct; 20(10):1722-9. Zhang YW, Ryder OA, Zhang YP. PMID: 12949140.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    109. Low nucleotide diversity in chimpanzees and bonobos. Genetics. 2003 Aug; 164(4):1511-8. Yu N, Jensen-Seaman MI, Chemnick L, Kidd JR, Deinard AS, Ryder O, Kidd KK, Li WH. PMID: 12930756.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansAnimalsCells
    110. Comparative analysis of gene-expression patterns in human and African great ape cultured fibroblasts. Genome Res. 2003 Jul; 13(7):1619-30. Karaman MW, Houck ML, Chemnick LG, Nagpal S, Chawannakul D, Sudano D, Pike BL, Ho VV, Ryder OA, Hacia JG. PMID: 12840040.
      View in: PubMed   Mentions: 50     Fields:    Translation:HumansAnimalsCells
    111. Homologous fission event(s) implicated for chromosomal polymorphisms among five species in the genus Equus. Cytogenet Genome Res. 2003; 102(1-4):217-21. Myka JL, Lear TL, Houck ML, Ryder OA, Bailey E. PMID: 14970706.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    112. FISH analysis comparing genome organization in the domestic horse (Equus caballus) to that of the Mongolian wild horse (E. przewalskii). Cytogenet Genome Res. 2003; 102(1-4):222-5. Myka JL, Lear TL, Houck ML, Ryder OA, Bailey E. PMID: 14970707.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    113. Karyotypic relationships of horses and zebras: results of cross-species chromosome painting. Cytogenet Genome Res. 2003; 102(1-4):235-43. Yang F, Fu B, O'Brien PC, Robinson TJ, Ryder OA, Ferguson-Smith MA. PMID: 14970709.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsCells
    114. Genetic variation in Przewalski's horses, with special focus on the last wild caught mare, 231 Orlitza III. Cytogenet Genome Res. 2003; 102(1-4):226-34. Bowling AT, Zimmermann W, Ryder O, Penado C, Peto S, Chemnick L, Yasinetskaya N, Zharkikh T. PMID: 14970708.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    115. Cloning advances and challenges for conservation. Trends Biotechnol. 2002 Jun; 20(6):231-2; discussion 233. Ryder OA. PMID: 12007484.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    116. Cytogenetic analysis of California condor (Gymnogyps californianus) chromosomes: comparison with chicken (Gallus gallus) macrochromosomes. Cytogenet Genome Res. 2002; 98(1):54-60. Raudsepp T, Houck ML, O'Brien PC, Ferguson-Smith MA, Ryder OA, Chowdhary BP. PMID: 12584441.
      View in: PubMed   Mentions: 20     Fields:    Translation:Animals
    117. Resolution of the early placental mammal radiation using Bayesian phylogenetics. Science. 2001 Dec 14; 294(5550):2348-51. Murphy WJ, Eizirik E, O'Brien SJ, Madsen O, Scally M, Douady CJ, Teeling E, Ryder OA, Stanhope MJ, de Jong WW, Springer MS. PMID: 11743200.
      View in: PubMed   Mentions: 304     Fields:    Translation:AnimalsCells
    118. Primate evolutionary genetics. J Hered. 2001 Nov-Dec; 92(6):453. Ryder OA. PMID: 11948210.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    119. Human and ape molecular clocks and constraints on paleontological hypotheses. J Hered. 2001 Nov-Dec; 92(6):469-74. Stauffer RL, Walker A, Ryder OA, Lyons-Weiler M, Hedges SB. PMID: 11948213.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansAnimals
    120. Genetic divergence of orangutan subspecies (Pongo pygmaeus). J Mol Evol. 2001 Jun; 52(6):516-26. Zhang Y, Ryder OA, Zhang Y. PMID: 11443355.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    121. Molecular phylogenetics and the origins of placental mammals. Nature. 2001 Feb 01; 409(6820):614-8. Murphy WJ, Eizirik E, Johnson WE, Zhang YP, Ryder OA, O'Brien SJ. PMID: 11214319.
      View in: PubMed   Mentions: 313     Fields:    Translation:HumansAnimals
    122. Identification of monozygotic twin chimpanzees by microsatellite analysis. Am J Primatol. 2000 Oct; 52(2):101-6. Zhang Y, Lawrance SK, Ryder OA, Zhang Y, Isaza R. PMID: 11051445.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    123. DNA banks for endangered animal species. Science. 2000 Apr 14; 288(5464):275-7. Ryder OA, McLaren A, Brenner S, Zhang YP, Benirschke K. PMID: 10777408.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    124. Molecular basis of albinism in the rhesus monkey. Mutat Res. 2000 Apr 03; 449(1-2):1-6. Ding B, Ryder OA, Wang X, Bai SC, Zhou SQ, Zhang Y. PMID: 10751629.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    125. Sequence evolution of the CCR5 chemokine receptor gene in primates. Mol Biol Evol. 1999 Sep; 16(9):1145-54. Zhang YW, Ryder OA, Zhang YP. PMID: 10486970.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    126. Distribution of the ERE-1 family in Perissodactyla. Mamm Genome. 1999 Sep; 10(9):930-3. Sakagami M, Hiromura K, Chemnick LG, Ryder OA. PMID: 10441748.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    127. Determination of ancestral alleles for human single-nucleotide polymorphisms using high-density oligonucleotide arrays. Nat Genet. 1999 Jun; 22(2):164-7. Hacia JG, Fan JB, Ryder O, Jin L, Edgemon K, Ghandour G, Mayer RA, Sun B, Hsie L, Robbins CM, Brody LC, Wang D, Lander ES, Lipshutz R, Fodor SP, Collins FS. PMID: 10369258.
      View in: PubMed   Mentions: 88     Fields:    Translation:HumansAnimals
    128. Mitochondrial sequences show diverse evolutionary histories of African hominoids. Proc Natl Acad Sci U S A. 1999 Apr 27; 96(9):5077-82. Gagneux P, Wills C, Gerloff U, Tautz D, Morin PA, Boesch C, Fruth B, Hohmann G, Ryder OA, Woodruff DS. PMID: 10220421.
      View in: PubMed   Mentions: 52     Fields:    Translation:HumansAnimals
    129. Primate evolution--in and out of Africa. Curr Biol. 1999 Feb 25; 9(4):R119-22. Zhang YP, Ryder OA. PMID: 10215416.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimals
    130. [The relationship among human, gorilla, chimpanzee and orangutan]. Yi Chuan Xue Bao. 1999; 26(6):604-9. Ding B, Zhang YP, Ryder OA. PMID: 10876659.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    131. Centric fusion differences among Oryx dammah, O. gazella, and O. leucoryx (Artiodactyla, Bovidae) Cytogenet Cell Genet. 1999; 86(1):74-80. Kumamoto AT, Charter SJ, Kingswood SC, Ryder OA, Gallagher DS. PMID: 10516440.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    132. Mitochondrial control region and 12S rRNA variation in Przewalski's horse (Equus przewalskii). Anim Genet. 1998 Dec; 29(6):456-9. Oakenfull EA, Ryder OA. PMID: 9883508.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    133. Chimp research. Science. 1998 Oct 02; 282(5386):47. Ryder OA. PMID: 9786795.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimals
    134. Centric fusion polymorphisms in waterbuck (Kobus ellipsiprymnus). J Hered. 1998 Jan-Feb; 89(1):96-100. Kingswood SC, Kumamoto AT, Charter SJ, Aman RA, Ryder OA. PMID: 9487681.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    135. [Mitochondrial DNA sequence evolution and conservation relevance of snub-nosed langurs]. Yi Chuan Xue Bao. 1997 Apr; 24(2):116-21. Zhang Y, Ryder OA. PMID: 9254966.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    136. Sequence variation and genetic diversity in the giant panda. Sci China C Life Sci. 1997 Apr; 40(2):210-6. Zhang Y, Ryder OA, Fan Z, Zhang H, He T, He G, Zhang A, Fei L, Zhong S, Chen H, Zhang C, Yang M, Zhu F, Peng Z, Pu T, Chen Y, Yao M, Guo W. PMID: 18726318.
      View in: PubMed   Mentions: 3     Fields:    
    137. Y-chromosome variation in great apes. Nature. 1997 Jan 09; 385(6612):125-6. Burrows W, Ryder OA. PMID: 8990113.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    138. Mitochondrial DNA diversity in gorillas. Mol Phylogenet Evol. 1996 Aug; 6(1):39-48. Garner KJ, Ryder OA. PMID: 8812304.
      View in: PubMed   Mentions: 14     Fields:    Translation:HumansAnimalsCells
    139. Evolution of the cryptic FMR1 CGG repeat. Nat Genet. 1995 Nov; 11(3):301-8. Eichler EE, Kunst CB, Lugenbeel KA, Ryder OA, Davison D, Warren ST, Nelson DL. PMID: 7581454.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    140. Different rates of mitochondrial DNA sequence evolution in Kirk's dik-dik (Madoqua kirkii) populations. Mol Phylogenet Evol. 1995 Sep; 4(3):291-7. Zhang Y, Ryder OA. PMID: 8845965.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    141. Cytogenetic analysis shows extensive genomic rearrangements between red howler (Alouatta seniculus, Linnaeus) subspecies. Am J Primatol. 1995; 35(3):171-183. Stanyon R, Tofanelli S, Morescalchi MA, Agoramoorthy G, Ryder OA, Wienberg J. PMID: 31924072.
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    142. Phylogenetic relationships of bears (the Ursidae) inferred from mitochondrial DNA sequences. Mol Phylogenet Evol. 1994 Dec; 3(4):351-9. Zhang YP, Ryder OA. PMID: 7697192.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    143. Diploid chromosome number and chromosomal variation in the white rhinoceros (Ceratotherium simum). J Hered. 1994 Jan-Feb; 85(1):30-4. Houck ML, Ryder OA, Váhala J, Kock RA, Oosterhuis JE. PMID: 8120356.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    144. Mitochondrial DNA sequence evolution in the Arctoidea. Proc Natl Acad Sci U S A. 1993 Oct 15; 90(20):9557-61. Zhang YP, Ryder OA. PMID: 8415740.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    145. Sequence of the mitochondrial control region, tRNA(Thr), tRNA(Pro) and tRNA(Phe) genes from the black rhinoceros, Diceros bicornis. Nucleic Acids Res. 1993 Sep 11; 21(18):4392. Jama M, Zhang Y, Aman RA, Ryder OA. PMID: 8414998.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    146. Chromosomal and mitochondrial DNA variation in orang utans. J Hered. 1993 Sep-Oct; 84(5):405-9. Ryder OA, Chemnick LG. PMID: 8409361.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    147. Genomic distribution of heterochromatic sequences in equids: implications to rapid chromosomal evolution. J Hered. 1991 Sep-Oct; 82(5):369-77. Wichman HA, Payne CT, Ryder OA, Hamilton MJ, Maltbie M, Baker RJ. PMID: 1658126.
      View in: PubMed   Mentions: 44     Fields:    Translation:AnimalsCells
    148. A chimpanzee-derived chromosome-specific alpha satellite DNA sequence conserved between chimpanzee and human. Chromosoma. 1991 Mar; 100(3):156-61. Baldini A, Miller DA, Miller OJ, Ryder OA, Mitchell AR. PMID: 2040204.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    149. Phylogeny and evolution of antlered deer determined from mitochondrial DNA sequences. Proc Natl Acad Sci U S A. 1990 Aug; 87(16):6127-31. Miyamoto MM, Kraus F, Ryder OA. PMID: 2385588.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    150. Distribution of non-telomeric sites of the (TTAGGG)n telomeric sequence in vertebrate chromosomes. Chromosoma. 1990 Apr; 99(1):3-10. Meyne J, Baker RJ, Hobart HH, Hsu TC, Ryder OA, Ward OG, Wiley JE, Wurster-Hill DH, Yates TL, Moyzis RK. PMID: 2340757.
      View in: PubMed   Mentions: 169     Fields:    Translation:AnimalsCells
    151. Chromosomal and molecular evolution in Asiatic wild asses. Genetica. 1990; 83(1):67-72. Ryder OA, Chemnick LG. PMID: 2090563.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    152. The majority of vitamin A is transported as retinyl esters in the blood of most carnivores. Comp Biochem Physiol A Comp Physiol. 1990; 95(4):573-8. Schweigert FJ, Ryder OA, Rambeck WA, Zucker H. PMID: 1971545.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    153. Allozyme variation and differentiation in African and Indian rhinoceroses. J Hered. 1989 Sep-Oct; 80(5):377-82. Merenlender AM, Woodruff DS, Ryder OA, Kock R, Váhala J. PMID: 2794471.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    154. Letters. J Hered. 1988 Sep 01; 79(5):401-402. Bowling AT, Ryder OA. PMID: 31581759.
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    155. Identification of the gene coding for the Endo B murine cytokeratin and its methylated, stable inactive state in mouse nonepithelial cells. Genes Dev. 1988 May; 2(5):505-16. Oshima RG, Trevor K, Shevinsky LH, Ryder OA, Ceceña G. PMID: 2454868.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    156. Genetic studies of blood markers in Przewalski's horses. J Hered. 1987 Mar-Apr; 78(2):75-80. Bowling AT, Ryder OA. PMID: 3584938.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    157. Mitochondrial DNA evolution in the genus Equus. Mol Biol Evol. 1986 Nov; 3(6):535-46. George M, Ryder OA. PMID: 2832696.
      View in: PubMed   Mentions: 20     Fields:    Translation:Animals
    158. Immunological systematics of the extinct quagga (Equidae). Experientia. 1985 Sep 15; 41(9):1192-3. Lowenstein JM, Ryder OA. PMID: 4043335.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    159. Male mule foal qualifies as the offspring of a female mule and jack donkey. J Hered. 1985 Sep-Oct; 76(5):379-81. Ryder OA, Chemnick LG, Bowling AT, Benirschke K. PMID: 4056372.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    160. DNA sequences from the quagga, an extinct member of the horse family. Nature. 1984 Nov 15-21; 312(5991):282-4. Higuchi R, Bowman B, Freiberger M, Ryder OA, Wilson AC. PMID: 6504142.
      View in: PubMed   Mentions: 88     Fields:    Translation:AnimalsCells
    161. Molecular cytogenetics of the equidae. II. purification and cytological localization of a (G + C)-rich satellite DNA from Equus hemionus onager and cross-species hybridization to E. asinus chromosomes. Cytogenet Cell Genet. 1983; 35(2):124-30. Gadi IK, Ryder OA. PMID: 6851669.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    162. Characterization of a cloned repetitive DNA sequence concentrated on the human X chromosome. Proc Natl Acad Sci U S A. 1982 Nov; 79(21):6593-7. Yang TP, Hansen SK, Oishi KK, Ryder OA, Hamkalo BA. PMID: 6959140.
      View in: PubMed   Mentions: 65     Fields:    Translation:HumansCells
    163. Satellite DNA relationships in man and the primates. Nucleic Acids Res. 1981 Jul 24; 9(14):3235-49. Mitchell AR, Gosden JR, Ryder OA. PMID: 6269076.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    164. Molecular evidence for genetic exchanges among ribosomal genes on nonhomologous chromosomes in man and apes. Proc Natl Acad Sci U S A. 1980 Dec; 77(12):7323-7. Arnheim N, Krystal M, Schmickel R, Wilson G, Ryder O, Zimmer E. PMID: 6261251.
      View in: PubMed   Mentions: 126     Fields:    Translation:HumansAnimalsCells
    165. Molecular cytogenetics of the Equidae. I. Purification and cytological localization of a (G + C)-rich satellite DNA from Equus przewalskii. Chromosoma. 1979 Apr 30; 72(2):115-29. Ryder OA, Hansen SK. PMID: 456203.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    166. Hemoglobin polymorphism in Equus przewalskii and E. caballus analyzed by isoelectric focusing. Comp Biochem Physiol B. 1979; 62(4):305-8. Ryder OA, Sparkes RS, Sparkes MC, Clegg JB. PMID: 318448.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    167. Detection of proviral DNA in horse cells infected with equine infectious anemia virus. J Virol. 1978 Jun; 26(3):577-83. Rice NR, Simek S, Ryder OA, Coggins L. PMID: 209211.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    168. Common and species-specific esterases of Equidae--IV. Horse of przewalski, onager and Zebra hartmannae. Comp Biochem Physiol B. 1978; 61(3):357-64. Kaminski M, Metenier L, Sykiotis M, Ryder OA, Demontoy MC. PMID: 318381.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    169. Chromosomal polymorphism in Equus hemionus. Cytogenet Cell Genet. 1978; 21(4):177-83. Ryder OA. PMID: 149653.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    170. Chromosome banding studies of the Equidae. Cytogenet Cell Genet. 1978; 20(1-6):332-50. Ryder OA, Epel NC, Benirschke K. PMID: 648186.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    171. Electron microscopy of membrane-associated folded chromosomes of Escherichia coli. Chromosoma. 1976 Mar 31; 55(1):13-25. Kavenoff R, Ryder OA. PMID: 767075.
      View in: PubMed   Mentions: 30     Fields:    Translation:Cells
    172. Properties of membrane-associated folded chromosomes of E. coli related to initiation and termination of DNA replication. Cell. 1975 Apr; 4(4):337-45. Ryder OA, Smith DW. PMID: 1091362.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    173. Isolation of membrane-associated folded chromosomes from Escherichia coli: effect of protein synthesis inhibition. J Bacteriol. 1974 Dec; 120(3):1356-63. Ryder OA, Smith DW. PMID: 4612018.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
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