Oliver Ryder

Title(s)Adjunct Professor, Ecology, Behavior, and Evolution
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    COMPARATIVE MOLECULAR CYTOGENETICS
    NIH R01GM023073Jun 1, 1976 - Dec 31, 1988
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum). Mol Ecol. 2021 Jun 27. Sánchez-Barreiro F, Gopalakrishnan S, Ramos-Madrigal J, Westbury MV, de Manuel M, Margaryan A, Ciucani MM, Vieira FG, Patramanis Y, Kalthoff DC, Timmons Z, Sicheritz-Pontén T, Dalén L, Ryder OA, Zhang G, Marquès-Bonet T, Moodley Y, Gilbert MTP. PMID: 34176179.
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    2. Recent Evolutionary History of Tigers Highlights Contrasting Roles of Genetic Drift and Selection. Mol Biol Evol. 2021 May 19; 38(6):2366-2379. Armstrong EE, Khan A, Taylor RW, Gouy A, Greenbaum G, Thiéry A, Kang JT, Redondo SA, Prost S, Barsh G, Kaelin C, Phalke S, Chugani A, Gilbert M, Miquelle D, Zachariah A, Borthakur U, Reddy A, Louis E, Ryder OA, Jhala YV, Petrov D, Excoffier L, Hadly E, Ramakrishnan U. PMID: 33592092.
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    3. Genome-wide diversity in the California condor tracks its prehistoric abundance and decline. Curr Biol. 2021 May 07. Robinson JA, Bowie RCK, Dudchenko O, Aiden EL, Hendrickson SL, Steiner CC, Ryder OA, Mindell DP, Wall JD. PMID: 33989525.
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    4. How to Make a Rodent Giant: Genomic Basis and Tradeoffs of Gigantism in the Capybara, the World's Largest Rodent. Mol Biol Evol. 2021 05 04; 38(5):1715-1730. Herrera-Álvarez S, Karlsson E, Ryder OA, Lindblad-Toh K, Crawford AJ. PMID: 33169792.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    5. Towards complete and error-free genome assemblies of all vertebrate species. Nature. 2021 Apr; 592(7856):737-746. Rhie A, McCarthy SA, Fedrigo O, Damas J, Formenti G, Koren S, Uliano-Silva M, Chow W, Fungtammasan A, Kim J, Lee C, Ko BJ, Chaisson M, Gedman GL, Cantin LJ, Thibaud-Nissen F, Haggerty L, Bista I, Smith M, Haase B, Mountcastle J, Winkler S, Paez S, Howard J, Vernes SC, Lama TM, Grutzner F, Warren WC, Balakrishnan CN, Burt D, George JM, Biegler MT, Iorns D, Digby A, Eason D, Robertson B, Edwards T, Wilkinson M, Turner G, Meyer A, Kautt AF, Franchini P, Detrich HW, Svardal H, Wagner M, Naylor GJP, Pippel M, Malinsky M, Mooney M, Simbirsky M, Hannigan BT, Pesout T, Houck M, Misuraca A, Kingan SB, Hall R, Kronenberg Z, Sovic I, Dunn C, Ning Z, Hastie A, Lee J, Selvaraj S, Green RE, Putnam NH, Gut I, Ghurye J, Garrison E, Sims Y, Collins J, Pelan S, Torrance J, Tracey A, Wood J, Dagnew RE, Guan D, London SE, Clayton DF, Mello CV, Friedrich SR, Lovell PV, Osipova E, Al-Ajli FO, Secomandi S, Kim H, Theofanopoulou C, Hiller M, Zhou Y, Harris RS, Makova KD, Medvedev P, Hoffman J, Masterson P, Clark K, Martin F, Howe K, Flicek P, Walenz BP, Kwak W, Clawson H, Diekhans M, Nassar L, Paten B, Kraus RHS, Crawford AJ, Gilbert MTP, Zhang G, Venkatesh B, Murphy RW, Koepfli KP, Shapiro B, Johnson WE, Di Palma F, Marques-Bonet T, Teeling EC, Warnow T, Graves JM, Ryder OA, Haussler D, O'Brien SJ, Korlach J, Lewin HA, Howe K, Myers EW, Durbin R, Phillippy AM, Jarvis ED. PMID: 33911273.
      View in: PubMed   Mentions: 13     Fields:    
    6. Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations. Nat Commun. 2021 04 26; 12(1):2393. von Seth J, Dussex N, Díez-Del-Molino D, van der Valk T, Kutschera VE, Kierczak M, Steiner CC, Liu S, Gilbert MTP, Sinding MS, Prost S, Guschanski K, Nathan SKSS, Brace S, Chan YL, Wheat CW, Skoglund P, Ryder OA, Goossens B, Götherström A, Dalén L. PMID: 33896938.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    7. An annotated draft genome for the Andean bear, Tremarctos ornatus. J Hered. 2021 Apr 21. Saremi NF, Oppenheimer J, Vollmers C, O'Connell B, Milne SA, Byrne A, Yu L, Ryder OA, Green RE, Shapiro B. PMID: 33882130.
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    8. Author Correction: Dense sampling of bird diversity increases power of comparative genomics. Nature. 2021 Apr 08. Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, Andreu-Sánchez S, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MS, Puetz L, Cavill E, Ribeiro ÂM, Eckhart L, Fjeldså J, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Tietze DT, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Fuchs J, Bunce M, Burt DW, Cracraft J, Meng G, Hackett SJ, Ryan PG, Jønsson KA, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Vignal A, Soares AER, Shapiro B, González-Solís J, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Dalén L, Urrutia AO, Székely T, Liu Y, Campana MG, Corvelo A, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Mouritsen H, Thiele N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Milá B, Ketterson ED, Fidler AE, Friis G, Parody-Merino ÁM, Battley PF, Cox MP, Lima NCB, Prosdocimi F, Parchman TL, Schlinger BA, Loiselle BA, Blake JG, Lim HC, Day LB, Fuxjager MJ, Baldwin MW, Braun MJ, Wirthlin M, Dikow RB, Ryder TB, Camenisch G, Keller LF, DaCosta JM, Hauber ME, Louder MIM, Witt CC, McGuire JA, Mudge J, Megna LC, Carling MD, Wang B, Taylor SA, Del-Rio G, Aleixo A, Vasconcelos ATR, Mello CV, Weir JT, Haussler D, Li Q, Yang H, Wang J, Lei F, Rahbek C, Gilbert MTP, Graves GR, Jarvis ED, Paten B, Zhang G. PMID: 33833441.
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    9. Characterization of 29 polymorphic microsatellite markers developed by genomic screening of Sumatran rhinoceros (Dicerorhinus sumatrensis). BMC Res Notes. 2021 Mar 26; 14(1):119. Brandt JR, Saidah SH, Zhao K, Ishida Y, Apriyana I, Ryder OA, Ramono W, Sudoyo H, Suryadi H, Van Coeverden de Groot PJ, Roca AL. PMID: 33771210.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    10. Rewinding Extinction in the Northern White Rhinoceros: Genetically Diverse Induced Pluripotent Stem Cell Bank for Genetic Rescue. Stem Cells Dev. 2021 02; 30(4):177-189. Korody ML, Ford SM, Nguyen TD, Pivaroff CG, Valiente-Alandi I, Peterson SE, Ryder OA, Loring JF. PMID: 33406994.
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    11. Platypus and echidna genomes reveal mammalian biology and evolution. Nature. 2021 Apr; 592(7856):756-762. Zhou Y, Shearwin-Whyatt L, Li J, Song Z, Hayakawa T, Stevens D, Fenelon JC, Peel E, Cheng Y, Pajpach F, Bradley N, Suzuki H, Nikaido M, Damas J, Daish T, Perry T, Zhu Z, Geng Y, Rhie A, Sims Y, Wood J, Haase B, Mountcastle J, Fedrigo O, Li Q, Yang H, Wang J, Johnston SD, Phillippy AM, Howe K, Jarvis ED, Ryder OA, Kaessmann H, Donnelly P, Korlach J, Lewin HA, Graves J, Belov K, Renfree MB, Grutzner F, Zhou Q, Zhang G. PMID: 33408411.
      View in: PubMed   Mentions: 4     Fields:    
    12. Diverse phylogenomic datasets uncover a concordant scenario of laurasiatherian interordinal relationships. Mol Phylogenet Evol. 2021 04; 157:107065. Lv X, Hu J, Hu Y, Li Y, Xu D, Ryder OA, Irwin DM, Yu L. PMID: 33387649.
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    13. Karyotype Evolution in 10 Pinniped Species: Variability of Heterochromatin versus High Conservatism of Euchromatin as Revealed by Comparative Molecular Cytogenetics. Genes (Basel). 2020 12 10; 11(12). Beklemisheva VR, Perelman PL, Lemskaya NA, Proskuryakova AA, Serdyukova NA, Burkanov VN, Gorshunov MB, Ryder O, Thompson M, Lento G, O'Brien SJ, Graphodatsky AS. PMID: 33321928.
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    14. Reference genome and demographic history of the most endangered marine mammal, the vaquita. Mol Ecol Resour. 2021 May; 21(4):1008-1020. Morin PA, Archer FI, Avila CD, Balacco JR, Bukhman YV, Chow W, Fedrigo O, Formenti G, Fronczek JA, Fungtammasan A, Gulland FMD, Haase B, Peter Heide-Jorgensen M, Houck ML, Howe K, Misuraca AC, Mountcastle J, Musser W, Paez S, Pelan S, Phillippy A, Rhie A, Robinson J, Rojas-Bracho L, Rowles TK, Ryder OA, Smith CR, Stevenson S, Taylor BL, Teilmann J, Torrance J, Wells RS, Westgate AJ, Jarvis ED. PMID: 33089966.
      View in: PubMed   Mentions: 5     Fields:    
    15. Dense sampling of bird diversity increases power of comparative genomics. Nature. 2020 11; 587(7833):252-257. Feng S, Stiller J, Deng Y, Armstrong J, Fang Q, Reeve AH, Xie D, Chen G, Guo C, Faircloth BC, Petersen B, Wang Z, Zhou Q, Diekhans M, Chen W, Andreu-Sánchez S, Margaryan A, Howard JT, Parent C, Pacheco G, Sinding MS, Puetz L, Cavill E, Ribeiro ÂM, Eckhart L, Fjeldså J, Hosner PA, Brumfield RT, Christidis L, Bertelsen MF, Sicheritz-Ponten T, Tietze DT, Robertson BC, Song G, Borgia G, Claramunt S, Lovette IJ, Cowen SJ, Njoroge P, Dumbacher JP, Ryder OA, Fuchs J, Bunce M, Burt DW, Cracraft J, Meng G, Hackett SJ, Ryan PG, Jønsson KA, Jamieson IG, da Fonseca RR, Braun EL, Houde P, Mirarab S, Suh A, Hansson B, Ponnikas S, Sigeman H, Stervander M, Frandsen PB, van der Zwan H, van der Sluis R, Visser C, Balakrishnan CN, Clark AG, Fitzpatrick JW, Bowman R, Chen N, Cloutier A, Sackton TB, Edwards SV, Foote DJ, Shakya SB, Sheldon FH, Vignal A, Soares AER, Shapiro B, González-Solís J, Ferrer-Obiol J, Rozas J, Riutort M, Tigano A, Friesen V, Dalén L, Urrutia AO, Székely T, Liu Y, Campana MG, Corvelo A, Fleischer RC, Rutherford KM, Gemmell NJ, Dussex N, Mouritsen H, Thiele N, Delmore K, Liedvogel M, Franke A, Hoeppner MP, Krone O, Fudickar AM, Milá B, Ketterson ED, Fidler AE, Friis G, Parody-Merino ÁM, Battley PF, Cox MP, Lima NCB, Prosdocimi F, Parchman TL, Schlinger BA, Loiselle BA, Blake JG, Lim HC, Day LB, Fuxjager MJ, Baldwin MW, Braun MJ, Wirthlin M, Dikow RB, Ryder TB, Camenisch G, Keller LF, DaCosta JM, Hauber ME, Louder MIM, Witt CC, McGuire JA, Mudge J, Megna LC, Carling MD, Wang B, Taylor SA, Del-Rio G, Aleixo A, Vasconcelos ATR, Mello CV, Weir JT, Haussler D, Li Q, Yang H, Wang J, Lei F, Rahbek C, Gilbert MTP, Graves GR, Jarvis ED, Paten B, Zhang G. PMID: 33177665.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimals
    16. Interspecific Gene Flow and the Evolution of Specialization in Black and White Rhinoceros. Mol Biol Evol. 2020 11 01; 37(11):3105-3117. Moodley Y, Westbury MV, Russo IM, Gopalakrishnan S, Rakotoarivelo A, Olsen RA, Prost S, Tunstall T, Ryder OA, Dalén L, Bruford MW. PMID: 32585004.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    17. Publisher Correction: The tuatara genome reveals ancient features of amniote evolution. Nature. 2020 Sep; 585(7823):E3. Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, Martin FJ, Flicek P, Petersen B, Kang L, Michalak P, Buckley TR, Wilson M, Cheng Y, Miller H, Schott RK, Jordan MD, Newcomb RD, Arroyo JI, Valenzuela N, Hore TA, Renart J, Peona V, Peart CR, Warmuth VM, Zeng L, Kortschak RD, Raison JM, Zapata VV, Wu Z, Santesmasses D, Mariotti M, Guigó R, Rupp SM, Twort VG, Dussex N, Taylor H, Abe H, Bond DM, Paterson JM, Mulcahy DG, Gonzalez VL, Barbieri CG, DeMeo DP, Pabinger S, Van Stijn T, Clarke S, Ryder O, Edwards SV, Salzberg SL, Anderson L, Nelson N, Stone C, Ngatiwai Trust Board . PMID: 32811988.
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    18. Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates. Proc Natl Acad Sci U S A. 2020 09 08; 117(36):22311-22322. Damas J, Hughes GM, Keough KC, Painter CA, Persky NS, Corbo M, Hiller M, Koepfli KP, Pfenning AR, Zhao H, Genereux DP, Swofford R, Pollard KS, Ryder OA, Nweeia MT, Lindblad-Toh K, Teeling EC, Karlsson EK, Lewin HA. PMID: 32826334.
      View in: PubMed   Mentions: 98     Fields:    Translation:HumansAnimalsCellsPHPublic Health
    19. Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros. Curr Biol. 2020 10 05; 30(19):3871-3879.e7. Lord E, Dussex N, Kierczak M, Díez-Del-Molino D, Ryder OA, Stanton DWG, Gilbert MTP, Sánchez-Barreiro F, Zhang G, Sinding MS, Lorenzen ED, Willerslev E, Protopopov A, Shidlovskiy F, Fedorov S, Bocherens H, Nathan SKSS, Goossens B, van der Plicht J, Chan YL, Prost S, Potapova O, Kirillova I, Lister AM, Heintzman PD, Kapp JD, Shapiro B, Vartanyan S, Götherström A, Dalén L. PMID: 32795436.
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    20. The tuatara genome reveals ancient features of amniote evolution. Nature. 2020 08; 584(7821):403-409. Gemmell NJ, Rutherford K, Prost S, Tollis M, Winter D, Macey JR, Adelson DL, Suh A, Bertozzi T, Grau JH, Organ C, Gardner PP, Muffato M, Patricio M, Billis K, Martin FJ, Flicek P, Petersen B, Kang L, Michalak P, Buckley TR, Wilson M, Cheng Y, Miller H, Schott RK, Jordan MD, Newcomb RD, Arroyo JI, Valenzuela N, Hore TA, Renart J, Peona V, Peart CR, Warmuth VM, Zeng L, Kortschak RD, Raison JM, Zapata VV, Wu Z, Santesmasses D, Mariotti M, Guigó R, Rupp SM, Twort VG, Dussex N, Taylor H, Abe H, Bond DM, Paterson JM, Mulcahy DG, Gonzalez VL, Barbieri CG, DeMeo DP, Pabinger S, Van Stijn T, Clarke S, Ryder O, Edwards SV, Salzberg SL, Anderson L, Nelson N, Stone C, Ngatiwai Trust Board . PMID: 32760000.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    21. Ampliconic Genes on the Great Ape Y Chromosomes: Rapid Evolution of Copy Number but Conservation of Expression Levels. Genome Biol Evol. 2020 06 01; 12(6):842-859. Vegesna R, Tomaszkiewicz M, Ryder OA, Campos-Sánchez R, Medvedev P, DeGiorgio M, Makova KD. PMID: 32374870.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    22. A draft genome assembly of spotted hyena, Crocuta crocuta. Sci Data. 2020 04 28; 7(1):126. Yang C, Li F, Xiong Z, Koepfli KP, Ryder O, Perelman P, Li Q, Zhang G. PMID: 32345970.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    23. Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates. bioRxiv. 2020 Apr 18. Damas J, Hughes GM, Keough KC, Painter CA, Persky NS, Corbo M, Hiller M, Koepfli KP, Pfenning AR, Zhao H, Genereux DP, Swofford R, Pollard KS, Ryder OA, Nweeia MT, Lindblad-Toh K, Teeling EC, Karlsson EK, Lewin HA. PMID: 32511356.
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    24. Assessing possible hybridization among managed Nubian ibex in North America. Zoo Biol. 2020 Mar; 39(2):121-128. Putnam AS, Nguyen TN, Mott A, Korody ML, Ryder OA. PMID: 31833594.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    25. Contemporary Demographic Reconstruction Methods Are Robust to Genome Assembly Quality: A Case Study in Tasmanian Devils. Mol Biol Evol. 2019 12 01; 36(12):2906-2921. Patton AH, Margres MJ, Stahlke AR, Hendricks S, Lewallen K, Hamede RK, Ruiz-Aravena M, Ryder O, McCallum HI, Jones ME, Hohenlohe PA, Storfer A. PMID: 31424552.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    26. Precision nomenclature for the new genomics. Gigascience. 2019 08 01; 8(8). Lewin HA, Graves JAM, Ryder OA, Graphodatsky AS, O'Brien SJ. PMID: 31437278.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimals
    27. An integrated chromosome-scale genome assembly of the Masai giraffe (Giraffa camelopardalis tippelskirchi). Gigascience. 2019 08 01; 8(8). Farré M, Li Q, Darolti I, Zhou Y, Damas J, Proskuryakova AA, Kulemzina AI, Chemnick LG, Kim J, Ryder OA, Ma J, Graphodatsky AS, Zhang G, Larkin DM, Lewin HA. PMID: 31367745.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    28. Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards. Nat Ecol Evol. 2019 08; 3(8):1241-1252. Lind AL, Lai YYY, Mostovoy Y, Holloway AK, Iannucci A, Mak ACY, Fondi M, Orlandini V, Eckalbar WL, Milan M, Rovatsos M, Kichigin IG, Makunin AI, Johnson Pokorná M, Altmanová M, Trifonov VA, Schijlen E, Kratochvíl L, Fani R, Velenský P, Rehák I, Patarnello T, Jessop TS, Hicks JW, Ryder OA, Mendelson JR, Ciofi C, Kwok PY, Pollard KS, Bruneau BG. PMID: 31358948.
      View in: PubMed   Mentions: 13     Fields:    Translation:AnimalsCells
    29. Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits. Science. 2019 06 21; 364(6446). Chen L, Qiu Q, Jiang Y, Wang K, Lin Z, Li Z, Bibi F, Yang Y, Wang J, Nie W, Su W, Liu G, Li Q, Fu W, Pan X, Liu C, Yang J, Zhang C, Yin Y, Wang Y, Zhao Y, Zhang C, Wang Z, Qin Y, Liu W, Wang B, Ren Y, Zhang R, Zeng Y, da Fonseca RR, Wei B, Li R, Wan W, Zhao R, Zhu W, Wang Y, Duan S, Gao Y, Zhang YE, Chen C, Hvilsom C, Epps CW, Chemnick LG, Dong Y, Mirarab S, Siegismund HR, Ryder OA, Gilbert MTP, Lewin HA, Zhang G, Heller R, Wang W. PMID: 31221828.
      View in: PubMed   Mentions: 40     Fields:    Translation:Animals
    30. Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations. G3 (Bethesda). 2019 06 05; 9(6):1785-1793. Koepfli KP, Tamazian G, Wildt D, Dobrynin P, Kim C, Frandsen PB, Godinho R, Yurchenko AA, Komissarov A, Krasheninnikova K, Kliver S, Kolchanova S, Gonçalves M, Carneiro M, Pinto PV, Ferrand N, Maldonado JE, Ferrie GM, Chemnick L, Ryder OA, Johnson WE, Comizzoli P, O'Brien SJ, Pukazhenthi BS. PMID: 31000506.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    31. Data gaps and opportunities for comparative and conservation biology. Proc Natl Acad Sci U S A. 2019 05 07; 116(19):9658-9664. Conde DA, Staerk J, Colchero F, da Silva R, Schöley J, Baden HM, Jouvet L, Fa JE, Syed H, Jongejans E, Meiri S, Gaillard JM, Chamberlain S, Wilcken J, Jones OR, Dahlgren JP, Steiner UK, Bland LM, Gomez-Mestre I, Lebreton JD, González Vargas J, Flesness N, Canudas-Romo V, Salguero-Gómez R, Byers O, Berg TB, Scheuerlein A, Devillard S, Schigel DS, Ryder OA, Possingham HP, Baudisch A, Vaupel JW. PMID: 31004061.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    32. Editorial. J Hered. 2019 03 05; 110(2):257-259. Ryder OA. PMID: 31222255.
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    33. Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks. Genome Res. 2019 04; 29(4):576-589. Farré M, Kim J, Proskuryakova AA, Zhang Y, Kulemzina AI, Li Q, Zhou Y, Xiong Y, Johnson JL, Perelman PL, Johnson WE, Warren WC, Kukekova AV, Zhang G, O'Brien SJ, Ryder OA, Graphodatsky AS, Ma J, Lewin HA, Larkin DM. PMID: 30760546.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    34. A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert. Gigascience. 2019 02 01; 8(2). Farré M, Li Q, Zhou Y, Damas J, Chemnick LG, Kim J, Ryder OA, Ma J, Zhang G, Larkin DM, Lewin HA. PMID: 30649288.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    35. Contrasting evolutionary history, anthropogenic declines and genetic contact in the northern and southern white rhinoceros (Ceratotherium simum). Proc Biol Sci. 2018 11 07; 285(1890). Moodley Y, Russo IM, Robovský J, Dalton DL, Kotzé A, Smith S, Stejskal J, Ryder OA, Hermes R, Walzer C, Bruford MW. PMID: 30404873.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    36. A High-Quality, Long-Read De Novo Genome Assembly to Aid Conservation of Hawaii's Last Remaining Crow Species. Genes (Basel). 2018 Aug 01; 9(8). Sutton JT, Helmkampf M, Steiner CC, Bellinger MR, Korlach J, Hall R, Baybayan P, Muehling J, Gu J, Kingan S, Masuda BM, Ryder OA. PMID: 30071683.
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    37. Genetic Structure and Diversity Among Historic and Modern Populations of the Sumatran Rhinoceros (Dicerorhinus sumatrensis). J Hered. 2018 06 27; 109(5):553-565. Brandt JR, van Coeverden de Groot PJ, Witt KE, Engelbrektsson PK, Helgen KM, Malhi RS, Ryder OA, Roca AL. PMID: 29684146.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    38. The Case of X and Y Localization of Nucleolus Organizer Regions (NORs) in Tragulus javanicus (Cetartiodactyla, Mammalia). Genes (Basel). 2018 Jun 20; 9(6). Proskuryakova AA, Kulemzina AI, Perelman PL, Serdukova NA, Ryder OA, Graphodatsky AS. PMID: 29925822.
      View in: PubMed   Mentions: 1     Fields:    
    39. Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells. Genome Res. 2018 06; 28(6):780-788. Tunstall T, Kock R, Vahala J, Diekhans M, Fiddes I, Armstrong J, Paten B, Ryder OA, Steiner CC. PMID: 29798851.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
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    44. X Chromosome Evolution in Cetartiodactyla. Genes (Basel). 2017 Aug 31; 8(9). Proskuryakova AA, Kulemzina AI, Perelman PL, Makunin AI, Larkin DM, Farré M, Kukekova AV, Lynn Johnson J, Lemskaya NA, Beklemisheva VR, Roelke-Parker ME, Bellizzi J, Ryder OA, O'Brien SJ, Graphodatsky AS. PMID: 28858207.
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    90. Detection of two distinct forms of apoC-I in great apes. Comp Biochem Physiol Part D Genomics Proteomics. 2010 Mar; 5(1):73-9. Puppione DL, Ryan CM, Bassilian S, Souda P, Xiao X, Ryder OA, Whitelegge JP. PMID: 20209111.
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    91. The sequence and de novo assembly of the giant panda genome. Nature. 2010 Jan 21; 463(7279):311-7. Li R, Fan W, Tian G, Zhu H, He L, Cai J, Huang Q, Cai Q, Li B, Bai Y, Zhang Z, Zhang Y, Wang W, Li J, Wei F, Li H, Jian M, Li J, Zhang Z, Nielsen R, Li D, Gu W, Yang Z, Xuan Z, Ryder OA, Leung FC, Zhou Y, Cao J, Sun X, Fu Y, Fang X, Guo X, Wang B, Hou R, Shen F, Mu B, Ni P, Lin R, Qian W, Wang G, Yu C, Nie W, Wang J, Wu Z, Liang H, Min J, Wu Q, Cheng S, Ruan J, Wang M, Shi Z, Wen M, Liu B, Ren X, Zheng H, Dong D, Cook K, Shan G, Zhang H, Kosiol C, Xie X, Lu Z, Zheng H, Li Y, Steiner CC, Lam TT, Lin S, Zhang Q, Li G, Tian J, Gong T, Liu H, Zhang D, Fang L, Ye C, Zhang J, Hu W, Xu A, Ren Y, Zhang G, Bruford MW, Li Q, Ma L, Guo Y, An N, Hu Y, Zheng Y, Shi Y, Li Z, Liu Q, Chen Y, Zhao J, Qu N, Zhao S, Tian F, Wang X, Wang H, Xu L, Liu X, Vinar T, Wang Y, Lam TW, Yiu SM, Liu S, Zhang H, Li D, Huang Y, Wang X, Yang G, Jiang Z, Wang J, Qin N, Li L, Li J, Bolund L, Kristiansen K, Wong GK, Olson M, Zhang X, Li S, Yang H, Wang J, Wang J. PMID: 20010809.
      View in: PubMed   Mentions: 456     Fields:    Translation:HumansAnimalsCells
    92. Mass spectral analyses of the two major apolipoproteins of great ape high density lipoproteins. Comp Biochem Physiol Part D Genomics Proteomics. 2009 12; 4(4):305-309. Puppione DL, Della Donna L, Laganowsky AD, Bassilian S, Souda P, Ryder OA, Whitelegge JP. PMID: 21298813.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    93. Molecular decay of the tooth gene Enamelin (ENAM) mirrors the loss of enamel in the fossil record of placental mammals. PLoS Genet. 2009 Sep; 5(9):e1000634. Meredith RW, Gatesy J, Murphy WJ, Ryder OA, Springer MS. PMID: 19730686.
      View in: PubMed   Mentions: 49     Fields:    Translation:AnimalsCells
    94. Forests of the night: refugia of genetic diversity in wild tigers. PLoS Genet. 2009 Aug; 5(8):e1000603. Ryder OA. PMID: 19680440.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    95. The value of avian genomics to the conservation of wildlife. BMC Genomics. 2009 Jul 14; 10 Suppl 2:S10. Romanov MN, Tuttle EM, Houck ML, Modi WS, Chemnick LG, Korody ML, Mork EM, Otten CA, Renner T, Jones KC, Dandekar S, Papp JC, Da Y, NISC Comparative Sequencing Program , Green ED, Magrini V, Hickenbotham MT, Glasscock J, McGrath S, Mardis ER, Ryder OA. PMID: 19607652.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    96. Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements. Gene. 2009 Dec 15; 448(2):242-9. Li J, Han K, Xing J, Kim HS, Rogers J, Ryder OA, Disotell T, Yue B, Batzer MA. PMID: 19497354.
      View in: PubMed   Mentions: 44     Fields:    Translation:AnimalsCells
    97. Isolation and characterization of 23 polymorphic microsatellite loci for a West Indian iguana (Cyclura pinguis) from the British Virgin Islands. Mol Ecol Resour. 2009 Sep; 9(5):1412-4. Lau J, Alberts AC, Chemnick LG, Gerber GP, Jones KC, Mitchell AA, Ryder OA. PMID: 21564923.
      View in: PubMed   Mentions: 4     Fields:    
    98. A chromosomal inversion unique to the northern white-cheeked gibbon. PLoS One. 2009; 4(3):e4999. Carbone L, Mootnick AR, Nadler T, Moisson P, Ryder O, Roos C, de Jong PJ. PMID: 19319194.
      View in: PubMed   Mentions: 8     Fields:    Translation:Animals
    99. Cryobanking of viable biomaterials: implementation of new strategies for conservation purposes. Mol Ecol. 2009 Mar; 18(6):1030-3. Lermen D, Blömeke B, Browne R, Clarke A, Dyce PW, Fixemer T, Fuhr GR, Holt WV, Jewgenow K, Lloyd RE, Lötters S, Paulus M, Reid GM, Rapoport DH, Rawson D, Ringleb J, Ryder OA, Spörl G, Schmitt T, Veith M, Müller P. PMID: 19207252.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    100. Sequencing primate genomes: what have we learned? Annu Rev Genomics Hum Genet. 2009; 10:355-86. Marques-Bonet T, Ryder OA, Eichler EE. PMID: 19630567.
      View in: PubMed   Mentions: 21     Fields:    Translation:HumansAnimals
    101. Horse domestication and conservation genetics of Przewalski's horse inferred from sex chromosomal and autosomal sequences. Mol Biol Evol. 2009 Jan; 26(1):199-208. Lau AN, Peng L, Goto H, Chemnick L, Ryder OA, Makova KD. PMID: 18931383.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    102. New insights into the evolution of intronic sequences of the beta-fibrinogen gene and their application in reconstructing mustelid phylogeny. Zoolog Sci. 2008 Jun; 25(6):662-72. Yu L, Liu J, Luan PT, Lee H, Lee M, Min MS, Ryder OA, Chemnick L, Davis H, Zhang YP. PMID: 18624576.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    103. Analysis of complete mitochondrial genome sequences increases phylogenetic resolution of bears (Ursidae), a mammalian family that experienced rapid speciation. BMC Evol Biol. 2007 Oct 24; 7:198. Yu L, Li YW, Ryder OA, Zhang YP. PMID: 17956639.
      View in: PubMed   Mentions: 28     Fields:    Translation:Animals
    104. Gallus GBrowse: a unified genomic database for the chicken. Nucleic Acids Res. 2008 Jan; 36(Database issue):D719-23. Schmidt CJ, Romanov M, Ryder O, Magrini V, Hickenbotham M, Glasscock J, McGrath S, Mardis E, Stein LD. PMID: 17933775.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    105. Primate TNF promoters reveal markers of phylogeny and evolution of innate immunity. PLoS One. 2007 Jul 18; 2(7):e621. Baena A, Mootnick AR, Falvo JV, Tsytskova AV, Ligeiro F, Diop OM, Brieva C, Gagneux P, O'Brien SJ, Ryder OA, Goldfeld AE. PMID: 17637837.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansAnimalsCells
    106. Construction of a California condor BAC library and first-generation chicken-condor comparative physical map as an endangered species conservation genomics resource. Genomics. 2006 Dec; 88(6):711-718. Romanov MN, Koriabine M, Nefedov M, de Jong PJ, Ryder OA. PMID: 16884891.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    107. Sonic Hedgehog, a key development gene, experienced intensified molecular evolution in primates. Hum Mol Genet. 2006 Jul 01; 15(13):2031-7. Dorus S, Anderson JR, Vallender EJ, Gilbert SL, Zhang L, Chemnick LG, Ryder OA, Li W, Lahn BT. PMID: 16687440.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimals
    108. A mobile element based phylogeny of Old World monkeys. Mol Phylogenet Evol. 2005 Dec; 37(3):872-80. Xing J, Wang H, Han K, Ray DA, Huang CH, Chemnick LG, Stewart CB, Disotell TR, Ryder OA, Batzer MA. PMID: 15936216.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    109. Alu insertion loci and platyrrhine primate phylogeny. Mol Phylogenet Evol. 2005 Apr; 35(1):117-26. Ray DA, Xing J, Hedges DJ, Hall MA, Laborde ME, Anders BA, White BR, Stoilova N, Fowlkes JD, Landry KE, Chemnick LG, Ryder OA, Batzer MA. PMID: 15737586.
      View in: PubMed   Mentions: 43     Fields:    Translation:HumansAnimalsCells
    110. Evolution of the tandem repeats in thymidylate synthase enhancer region (TSER) in primates. Gene. 2004 Aug 18; 338(1):47-54. Zhang YW, Luo HR, Ryder OA, Zhang YP. PMID: 15302405.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    111. A prevalent POLG CAG microsatellite length allele in humans and African great apes. Mamm Genome. 2004 Jun; 15(6):492-502. Rovio AT, Abel J, Ahola AL, Andres AM, Bertranpetit J, Blancher A, Bontrop RE, Chemnick LG, Cooke HJ, Cummins JM, Davis HA, Elliott DJ, Fritsche E, Hargreave TB, Hoffman SM, Jequier AM, Kao SH, Kim HS, Marchington DR, Mehmet D, Otting N, Poulton J, Ryder OA, Schuppe HC, Takenaka O, Wei YH, Wichmann L, Jacobs HT. PMID: 15181541.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    112. Nucleotide diversity in gorillas. Genetics. 2004 Mar; 166(3):1375-83. Yu N, Jensen-Seaman MI, Chemnick L, Ryder O, Li WH. PMID: 15082556.
      View in: PubMed   Mentions: 32     Fields:    Translation:AnimalsCells
    113. Refined genome-wide comparative map of the domestic horse, donkey and human based on cross-species chromosome painting: insight into the occasional fertility of mules. Chromosome Res. 2004; 12(1):65-76. Yang F, Fu B, O'Brien PC, Nie W, Ryder OA, Ferguson-Smith MA. PMID: 14984103.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansAnimalsCells
    114. Intra- and interspecific variation of the CCR5 gene in higher primates. Mol Biol Evol. 2003 Oct; 20(10):1722-9. Zhang YW, Ryder OA, Zhang YP. PMID: 12949140.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    115. Low nucleotide diversity in chimpanzees and bonobos. Genetics. 2003 Aug; 164(4):1511-8. Yu N, Jensen-Seaman MI, Chemnick L, Kidd JR, Deinard AS, Ryder O, Kidd KK, Li WH. PMID: 12930756.
      View in: PubMed   Mentions: 52     Fields:    Translation:HumansAnimalsCells
    116. Comparative analysis of gene-expression patterns in human and African great ape cultured fibroblasts. Genome Res. 2003 Jul; 13(7):1619-30. Karaman MW, Houck ML, Chemnick LG, Nagpal S, Chawannakul D, Sudano D, Pike BL, Ho VV, Ryder OA, Hacia JG. PMID: 12840040.
      View in: PubMed   Mentions: 51     Fields:    Translation:HumansAnimalsCells
    117. Cloning advances and challenges for conservation. Trends Biotechnol. 2002 Jun; 20(6):231-2; discussion 233. Ryder OA. PMID: 12007484.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    118. Primate evolutionary genetics. J Hered. 2001 Nov-Dec; 92(6):453. Ryder OA. PMID: 11948210.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    119. DNA banks for endangered animal species. Science. 2000 Apr 14; 288(5464):275-7. Ryder OA, McLaren A, Brenner S, Zhang YP, Benirschke K. PMID: 10777408.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
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