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Proteomics and personalized PDX models identify treatment for a progressive malignancy within an actionable timeframe. EMBO Mol Med. 2025 Apr; 17(4):625-644.
Barnabas GD, Bhat TA, Goebeler V, Leclair P, Azzam N, Melong N, Anderson C, Gom A, An S, Ergin EK, Shen Y, Conrrero A, Mungall AJ, Mungall KL, Maxwell CA, Reid GSD, Hirst M, Jones S, Chan JA, Senger DL, Berman JN, Parker SJ, Bush JW, Strahlendorf C, Deyell RJ, Lim CJ, Lange PF. PMID: 40204966; PMCID: PMC11982353.
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PubMed Mentions: Fields:
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Arkadia: a new player in hematopoietic stem and progenitor cell development. Haematologica. 2025 Feb 01; 110(2):273-275.
Ketharnathan S, Berman JN. PMID: 39568415; PMCID: PMC11788608.
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PubMed Mentions: Fields:
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tp53 R217H and R242H mutant zebrafish exhibit dysfunctional p53 hallmarks and recapitulate Li-Fraumeni syndrome phenotypes. Biochim Biophys Acta Mol Basis Dis. 2025 03; 1871(3):167612.
Kobar K, Tuzi L, Fiene JA, Burnley E, Galpin KJC, Midgen C, Laverty B, Subasri V, Wen TT, Hirst M, Moksa M, Carles A, Cao Q, Shlien A, Malkin D, Prykhozhij SV, Berman JN. PMID: 39643218.
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PubMed Mentions: Fields:
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A dataset of transcriptomic effects of camptothecin treatment on early zebrafish embryos. Data Brief. 2024 Dec; 57:111041.
Prykhozhij SV, Ban K, Brown ZL, Kobar K, Wajnberg G, Fuller C, Chacko S, Lacroix J, Crapoulet N, Midgen C, Shlien A, Malkin D, Berman JN. PMID: 39554546; PMCID: PMC11565048.
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PubMed Mentions:
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Loss of Dnajc21 leads to cytopenia and altered nucleotide metabolism in zebrafish. Leukemia. 2024 Oct; 38(10):2115-2126.
Ketharnathan S, Pokharel S, Prykhozhij SV, Cordeiro-Santanach A, Ban K, Dogan S, Hoang HD, Liebman MF, Leung E, Alain T, Alecu I, Bennett SAL, Cuperlovic-Culf M, Dror Y, Berman JN. PMID: 39138265; PMCID: PMC11436362.
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PubMed Mentions: Fields:
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miR-34a is a tumor suppressor in zebrafish and its expression levels impact metabolism, hematopoiesis and DNA damage. PLoS Genet. 2024 May; 20(5):e1011290.
Prykhozhij SV, Ban K, Brown ZL, Kobar K, Wajnberg G, Fuller C, Chacko S, Lacroix J, Crapoulet N, Midgen C, Shlien A, Malkin D, Berman JN. PMID: 38805544; PMCID: PMC11166285.
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PubMed Mentions: Fields:
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CIAO1 and MMS19 deficiency: A lethal neurodegenerative phenotype caused by cytosolic Fe-S cluster protein assembly disorders. Genet Med. 2024 06; 26(6):101104.
van Karnebeek CDM, Tarailo-Graovac M, Leen R, Meinsma R, Correard S, Jansen-Meijer J, Prykhozhij SV, Pena IA, Ban K, Schock S, Saxena V, Pras-Raves ML, Drögemöller BI, Grootemaat AE, van der Wel NN, Dobritzsch D, Roseboom W, Schomakers BV, Jaspers YRJ, Zoetekouw L, Roelofsen J, Ferreira CR, van der Lee R, Ross CJ, Kochan J, McIntyre RL, van Klinken JB, van Weeghel M, Kramer G, Weschke B, Labrune P, Willemsen MA, Riva D, Garavaglia B, Moeschler JB, Filiano JJ, Ekker M, Berman JN, Dyment D, Vaz FM, Wasserman WW, Houtkooper RH, van Kuilenburg ABP. PMID: 38411040; PMCID: PMC11788579.
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PubMed Mentions:
1 Fields:
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Mutation Knock-in Methods Using Single-Stranded DNA and Gene Editing Tools in Zebrafish. Methods Mol Biol. 2024; 2707:279-303.
Prykhozhij SV, Berman JN. PMID: 37668920.
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PubMed Mentions:
1 Fields:
Translation:
AnimalsCells
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Tissue-Engineered Disease Modeling of Lymphangioleiomyomatosis Exposes a Therapeutic Vulnerability to HDAC Inhibition. Adv Sci (Weinh). 2023 09; 10(26):e2302611.
Pietrobon A, Yockell-Lelièvre J, Melong N, Smith LJ, Delaney SP, Azzam N, Xue C, Merwin N, Lian E, Camacho-Magallanes A, Doré C, Musso G, Julian LM, Kristof AS, Tam RY, Berman JN, Shoichet MS, Stanford WL. PMID: 37400371; PMCID: PMC10502849.
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PubMed Mentions:
1 Fields:
Translation:
HumansAnimals
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phox2ba: The Potential Genetic Link behind the Overlap in the Symptomatology between CHARGE and Central Congenital Hypoventilation Syndromes. Genes (Basel). 2023 05 15; 14(5).
MacLean JE, Wertman JN, Prykhozhij SV, Chedrawe E, Langley S, Steele SL, Ban K, Blake K, Berman JN. PMID: 37239446; PMCID: PMC10218506.
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PubMed Mentions: Fields:
Translation:
Animals
-
Back to the future: evolutionary biology reveals a key regulatory switch in neuroblastoma pathogenesis. J Clin Invest. 2023 05 15; 133(10).
Wertman JN, Berman JN. PMID: 37183823; PMCID: PMC10178827.
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PubMed Mentions: Fields:
Translation:
HumansAnimalsCells
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The impact of Down syndrome-specific non-malignant hematopoietic regeneration in the bone marrow on the detection of leukemic measurable residual disease. Cytometry B Clin Cytom. 2023 07; 104(4):311-318.
Hsu FC, Hudson C, Wilson ER, Pardo LM, Singleton TP, Xu D, Zehentner BK, Hitzler J, Berman J, Wells DA, Loken MR, Brodersen LE. PMID: 37015883.
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Translation:
HumansCells
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S1P1 Threonine 236 Phosphorylation Mediates the Invasiveness of Triple-Negative Breast Cancer and Sensitivity to FTY720. Cells. 2023 03 23; 12(7).
Laroche FJF, Li S, Shen N, Hwang SK, Nguyen G, Yu W, Wong CK, Quinton RJ, Berman JN, Liu CT, Singh A, Ganem NJ, Thiagalingam S, Feng H. PMID: 37048053; PMCID: PMC10093541.
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PubMed Mentions:
2 Fields:
Translation:
HumansAnimalsCells
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Correction: Pilot study of jadomycin B pharmacokinetics and anti-tumoral effects in zebrafish larvae and mouse breast cancer xenograft models. Can J Physiol Pharmacol. 2023 Apr 01; 101(4):214.
McKeown BT, Relja NJ, Hall SR, Gebremeskel S, MacLeod JM, Veinotte CJ, Bennett LG, Ohlund LB, Sleno L, Jakeman DL, Berman JN, Johnston B, Goralski KB. PMID: 36847292.
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PubMed Mentions: Fields:
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Loss of calpain3b in Zebrafish, a Model of Limb-Girdle Muscular Dystrophy, Increases Susceptibility to Muscle Defects Due to Elevated Muscle Activity. Genes (Basel). 2023 02 15; 14(2).
Prykhozhij SV, Caceres L, Ban K, Cordeiro-Santanach A, Nagaraju K, Hoffman EP, Berman JN. PMID: 36833417; PMCID: PMC9957097.
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PubMed Mentions:
2 Fields:
Translation:
Animals
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Human JAK1 gain of function causes dysregulated myelopoeisis and severe allergic inflammation. JCI Insight. 2022 12 22; 7(24).
Biggs CM, Cordeiro-Santanach A, Prykhozhij SV, Deveau AP, Lin Y, Del Bel KL, Orben F, Ragotte RJ, Saferali A, Mostafavi S, Dinh L, Dai D, Weinacht KG, Dobbs K, Ott de Bruin L, Sharma M, Tsai K, Priatel JJ, Schreiber RA, Rozmus J, Hosking MC, Shopsowitz KE, McKinnon ML, Vercauteren S, Seear M, Notarangelo LD, Lynn FC, Berman JN, Turvey SE. PMID: 36546480; PMCID: PMC9869972.
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PubMed Mentions:
5 Fields:
Translation:
HumansAnimalsCells
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Pilot study of jadomycin B pharmacokinetics and anti-tumoral effects in zebrafish larvae and mouse breast cancer xenograft models. Can J Physiol Pharmacol. 2022 Nov 01; 100(11):1065-1076.
McKeown BT, Relja NJ, Hall SR, Gebremeskel S, MacLeod JM, Veinotte CJ, Bennett LG, Ohlund LB, Sleno L, Jakeman DL, Berman JN, Johnston B, Goralski KB. PMID: 35985040.
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PubMed Mentions:
4 Fields:
Translation:
HumansAnimals
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Zebrafish models of inflammation in hematopoietic development and disease. Front Cell Dev Biol. 2022; 10:955658.
Ketharnathan S, Rajan V, Prykhozhij SV, Berman JN. PMID: 35923854; PMCID: PMC9340492.
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PubMed Mentions:
2
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Low-Dose Metronomic Topotecan and Pazopanib (TOPAZ) in Children with Relapsed or Refractory Solid Tumors: A C17 Canadian Phase I Clinical Trial. Cancers (Basel). 2022 Jun 17; 14(12).
Manji A, Samson Y, Deyell RJ, Johnston DL, Lewis VA, Zorzi AP, Berman JN, Brodeur-Robb K, Morrison E, Kee L, Kumar S, Baruchel S, Whitlock JA, Morgenstern DA. PMID: 35740650; PMCID: PMC9221162.
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PubMed Mentions:
3
-
KIT D816V is dimerization-independent and activates downstream pathways frequently perturbed in mastocytosis. Br J Haematol. 2023 09; 202(5):960-970.
Rajan V, Prykhozhij SV, Pandey A, Cohen AM, Rainey JK, Berman JN. PMID: 35245395.
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PubMed Mentions:
1 Fields:
Translation:
HumansCells
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Radiation dose enhancement using gold nanoparticles with a diamond linear accelerator target: a multiple cell type analysis. Sci Rep. 2022 Jan 28; 12(1):1559.
Piccolo O, Lincoln JD, Melong N, Orr BC, Fernandez NR, Borsavage J, Berman JN, Robar J, Ha MN. PMID: 35091583; PMCID: PMC8799734.
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PubMed Mentions:
11 Fields:
Translation:
HumansAnimalsCells
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High-dose AraC is essential for the treatment of ML-DS independent of postinduction MRD: results of the COG AAML1531 trial. Blood. 2021 12 09; 138(23):2337-2346.
Hitzler J, Alonzo T, Gerbing R, Beckman A, Hirsch B, Raimondi S, Chisholm K, Viola S, Brodersen L, Loken M, Tong S, Druley T, O'Brien M, Hijiya N, Heerema-McKenney A, Wang YC, Schore R, Taub J, Gamis A, Kolb EA, Berman JN. PMID: 34320162; PMCID: PMC8662073.
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PubMed Mentions:
8 Fields:
Translation:
HumansCTClinical Trials
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Stress hematopoiesis induces a proliferative advantage in TET2 deficiency. Leukemia. 2022 03; 36(3):809-820.
Rajan V, Collett K, Woodside R, Prykhozhij SV, Moksa M, Carles A, Wong M, Liebman M, Hirst M, Berman JN. PMID: 34588613.
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PubMed Mentions:
2 Fields:
Translation:
HumansAnimalsCells
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STAG2 loss rewires oncogenic and developmental programs to promote metastasis in Ewing sarcoma. Cancer Cell. 2021 06 14; 39(6):827-844.e10.
Adane B, Alexe G, Seong BKA, Lu D, Hwang EE, Hnisz D, Lareau CA, Ross L, Lin S, Dela Cruz FS, Richardson M, Weintraub AS, Wang S, Iniguez AB, Dharia NV, Conway AS, Robichaud AL, Tanenbaum B, Krill-Burger JM, Vazquez F, Schenone M, Berman JN, Kung AL, Carr SA, Aryee MJ, Young RA, Crompton BD, Stegmaier K. PMID: 34129824; PMCID: PMC8378827.
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PubMed Mentions:
43 Fields:
Translation:
HumansAnimalsCells
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Zebrafish Cancer Predisposition Models. Front Cell Dev Biol. 2021; 9:660069.
Kobar K, Collett K, Prykhozhij SV, Berman JN. PMID: 33987182; PMCID: PMC8112447.
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PubMed Mentions:
9
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Humanized zebrafish enhance human hematopoietic stem cell survival and promote acute myeloid leukemia clonal diversity. Haematologica. 2020 10 01; 105(10):2391-2399.
Rajan V, Melong N, Hing Wong W, King B, Tong SR, Mahajan N, Gaston D, Lund T, Rittenberg D, Dellaire G, Campbell CJV, Druley T, Berman JN. PMID: 33054079; PMCID: PMC7556680.
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PubMed Mentions:
18 Fields:
Translation:
HumansAnimalsCells
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The identification of dual protective agents against cisplatin-induced oto- and nephrotoxicity using the zebrafish model. Elife. 2020 07 28; 9.
Wertman JN, Melong N, Stoyek MR, Piccolo O, Langley S, Orr B, Steele SL, Razaghi B, Berman JN. PMID: 32720645; PMCID: PMC7470826.
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PubMed Mentions:
12 Fields:
Translation:
HumansAnimalsCells
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The Canadian Rare Diseases Models and Mechanisms (RDMM) Network: Connecting Understudied Genes to Model Organisms. Am J Hum Genet. 2020 02 06; 106(2):143-152.
Boycott KM, Campeau PM, Howley HE, Pavlidis P, Rogic S, Oriel C, Berman JN, Hamilton RM, Hicks GG, Lipshitz HD, Masson JY, Shoubridge EA, Junker A, Leroux MR, McMaster CR, Michaud JL, Turvey SE, Dyment D, Innes AM, van Karnebeek CD, Lehman A, Cohn RD, MacDonald IM, Rachubinski RA, Frosk P, Vandersteen A, Wozniak RW, Pena IA, Wen XY, Lacaze-Masmonteil T, Rankin C, Hieter P. PMID: 32032513; PMCID: PMC7010971.
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PubMed Mentions:
27 Fields:
Translation:
HumansAnimals
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Genome Editing in Zebrafish Using High-Fidelity Cas9 Nucleases: Choosing the Right Nuclease for the Task. Methods Mol Biol. 2020; 2115:385-405.
Prykhozhij SV, Cordeiro-Santanach A, Caceres L, Berman JN. PMID: 32006412.
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PubMed Mentions:
3 Fields:
Translation:
Animals
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The Zebrafish Xenograft Platform-A Novel Tool for Modeling KSHV-Associated Diseases. Viruses. 2019 12 20; 12(1).
Pringle ES, Wertman J, Melong N, Coombs AJ, Young AL, O'Leary D, Veinotte C, Robinson CA, Ha MN, Dellaire G, Druley TE, McCormick C, Berman JN. PMID: 31861850; PMCID: PMC7019925.
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PubMed Mentions:
9 Fields:
Translation:
HumansAnimalsCells
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Mixed-phenotype acute leukemia: A cohort and consensus research strategy from the Children's Oncology Group Acute Leukemia of Ambiguous Lineage Task Force. Cancer. 2020 02 01; 126(3):593-601.
Orgel E, Alexander TB, Wood BL, Kahwash SB, Devidas M, Dai Y, Alonzo TA, Mullighan CG, Inaba H, Hunger SP, Raetz EA, Gamis AS, Rabin KR, Carroll AJ, Heerema NA, Berman JN, Woods WG, Loh ML, Zweidler-McKay PA, Horan JT, Children's Oncology Group Acute Leukemia of Ambiguous Lineage Task Force. PMID: 31661160; PMCID: PMC7489437.
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PubMed Mentions:
13 Fields:
Translation:
Humans
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Frizzled 4 regulates ventral blood vessel remodeling in the zebrafish retina. Dev Dyn. 2019 12; 248(12):1243-1256.
Caceres L, Prykhozhij SV, Cairns E, Gjerde H, Duff NM, Collett K, Ngo M, Nasrallah GK, McMaster CR, Litvak M, Robitaille JM, Berman JN. PMID: 31566834.
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PubMed Mentions:
5 Fields:
Translation:
HumansAnimals
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Pathologic Features of Down Syndrome Myelodysplastic Syndrome and Acute Myeloid Leukemia: A Report From the Children's Oncology Group Protocol AAML0431. Arch Pathol Lab Med. 2020 04; 144(4):466-472.
Mast KJ, Taub JW, Alonzo TA, Gamis AS, Mosse CA, Mathew P, Berman JN, Wang YC, Jones HM, Campana D, Coustan-Smith E, Raimondi SC, Hirsch B, Hitzler JK, Head DR. PMID: 31429606; PMCID: PMC7031019.
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PubMed Mentions:
5 Fields:
Translation:
Humans
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High-throughput Chemical Screening Identifies Focal Adhesion Kinase and Aurora Kinase B Inhibition as a Synergistic Treatment Combination in Ewing Sarcoma. Clin Cancer Res. 2019 07 15; 25(14):4552-4566.
Wang S, Hwang EE, Guha R, O'Neill AF, Melong N, Veinotte CJ, Conway Saur A, Wuerthele K, Shen M, McKnight C, Alexe G, Lemieux ME, Wang A, Hughes E, Xu X, Boxer MB, Hall MD, Kung A, Berman JN, Davis MI, Stegmaier K, Crompton BD. PMID: 30979745; PMCID: PMC6634997.
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PubMed Mentions:
24 Fields:
Translation:
HumansAnimalsCells
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Fats enhance stem cell emergence. Science. 2019 03 08; 363(6431):1041-1042.
Rajan V, Berman JN. PMID: 30846586.
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PubMed Mentions: Fields:
-
Model organisms-the critical link between gene discovery and therapeutic intervention. Clin Invest Med. 2018 11 03; 41:21-23.
Berman J. PMID: 30394275.
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PubMed Mentions: Fields:
Translation:
Humans
-
Zebrafish knock-ins swim into the mainstream. Dis Model Mech. 2018 10 24; 11(10).
Prykhozhij SV, Berman JN. PMID: 30366936; PMCID: PMC6215421.
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PubMed Mentions:
18 Fields:
Translation:
Animals
-
Optimized knock-in of point mutations in zebrafish using CRISPR/Cas9. Nucleic Acids Res. 2018 09 28; 46(17):9252.
Prykhozhij SV, Fuller C, Steele SL, Veinotte CJ, Razaghi B, Robitaille JM, McMaster CR, Shlien A, Malkin D, Berman JN. PMID: 30053067; PMCID: PMC6158599.
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PubMed Mentions:
11 Fields:
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Optimized knock-in of point mutations in zebrafish using CRISPR/Cas9. Nucleic Acids Res. 2018 09 28; 46(17):e102.
Prykhozhij SV, Fuller C, Steele SL, Veinotte CJ, Razaghi B, Robitaille JM, McMaster CR, Shlien A, Malkin D, Berman JN. PMID: 29905858; PMCID: PMC6158492.
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PubMed Mentions:
34 Fields:
Translation:
AnimalsCells
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Etiology and functional validation of gastrointestinal motility dysfunction in a zebrafish model of CHARGE syndrome. FEBS J. 2018 06; 285(11):2125-2140.
Cloney K, Steele SL, Stoyek MR, Croll RP, Smith FM, Prykhozhij SV, Brown MM, Midgen C, Blake K, Berman JN. PMID: 29660852.
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PubMed Mentions:
13 Fields:
Translation:
HumansAnimals
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How Surrogate and Chemical Genetics in Model Organisms Can Suggest Therapies for Human Genetic Diseases. Genetics. 2018 03; 208(3):833-851.
Strynatka KA, Gurrola-Gal MC, Berman JN, McMaster CR. PMID: 29487144; PMCID: PMC5844338.
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PubMed Mentions:
13 Fields:
Translation:
HumansAnimals
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Phloridzin docosahexaenoate, a novel flavonoid derivative, suppresses growth and induces apoptosis in T-cell acute lymphoblastic leukemia cells. Am J Cancer Res. 2017; 7(12):2452-2464.
Arumuggam N, Melong N, Too CK, Berman JN, Rupasinghe HV. PMID: 29312799; PMCID: PMC5752686.
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PubMed Mentions:
9
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Enzalutamide inhibits testosterone-induced growth of human prostate cancer xenografts in zebrafish and can induce bradycardia. Sci Rep. 2017 10 31; 7(1):14698.
Melong N, Steele S, MacDonald M, Holly A, Collins CC, Zoubeidi A, Berman JN, Dellaire G. PMID: 29089623; PMCID: PMC5665934.
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PubMed Mentions:
13 Fields:
Translation:
HumansAnimalsCells
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hace1 Influences zebrafish cardiac development via ROS-dependent mechanisms. Dev Dyn. 2018 02; 247(2):289-303.
Razaghi B, Steele SL, Prykhozhij SV, Stoyek MR, Hill JA, Cooper MD, McDonald L, Lin W, Daugaard M, Crapoulet N, Chacko S, Lewis SM, Scott IC, Sorensen PHB, Berman JN. PMID: 29024245.
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PubMed Mentions:
11 Fields:
Translation:
Animals
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In Vivo Validation of PAPSS1 (3'-phosphoadenosine 5'-phosphosulfate synthase 1) as a Cisplatin-sensitizing Therapeutic Target. Clin Cancer Res. 2017 Nov 01; 23(21):6555-6566.
Leung AWY, Veinotte CJ, Melong N, Oh MH, Chen K, Enfield KSS, Backstrom I, Warburton C, Yapp D, Berman JN, Bally MB, Lockwood WW. PMID: 28790117.
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PubMed Mentions:
8 Fields:
Translation:
HumansAnimalsCells
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Improved outcomes for myeloid leukemia of Down syndrome: a report from the Children's Oncology Group AAML0431 trial. Blood. 2017 06 22; 129(25):3304-3313.
Taub JW, Berman JN, Hitzler JK, Sorrell AD, Lacayo NJ, Mast K, Head D, Raimondi S, Hirsch B, Ge Y, Gerbing RB, Wang YC, Alonzo TA, Campana D, Coustan-Smith E, Mathew P, Gamis AS. PMID: 28389462; PMCID: PMC5482102.
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PubMed Mentions:
29 Fields:
Translation:
HumansCTClinical Trials
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A rapid and effective method for screening, sequencing and reporter verification of engineered frameshift mutations in zebrafish. Dis Model Mech. 2017 06 01; 10(6):811-822.
Prykhozhij SV, Steele SL, Razaghi B, Berman JN. PMID: 28280001; PMCID: PMC5483001.
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PubMed Mentions:
32 Fields:
Translation:
AnimalsCells
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FISH identifies a KAT6A/CREBBP fusion caused by a cryptic insertional t(8;16) in a case of spontaneously remitting congenital acute myeloid leukemia with a normal karyotype. Pediatr Blood Cancer. 2017 Aug; 64(8).
Barrett R, Morash B, Roback D, Pambrun C, Marfleet L, Ketterling RP, Harrison K, Berman JN. PMID: 28097792.
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PubMed Mentions:
6 Fields:
Translation:
HumansCells
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New Developments in CRISPR/Cas-based Functional Genomics and their Implications for Research Using Zebrafish. Curr Gene Ther. 2017; 17(4):286-300.
Prykhozhij SV, Caceres L, Berman JN. PMID: 29173171.
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PubMed Mentions:
11 Fields:
Translation:
Animals
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T Cell Immune Deficiency in zap70 Mutant Zebrafish. Mol Cell Biol. 2016 Dec 01; 36(23):2868-2876.
Moore JC, Mulligan TS, Yordán NT, Castranova D, Pham VN, Tang Q, Lobbardi R, Anselmo A, Liwski RS, Berman JN, Sadreyev RI, Weinstein BM, Langenau DM. PMID: 27601584; PMCID: PMC5108876.
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PubMed Mentions:
23 Fields:
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Roles for APRIN (PDS5B) in homologous recombination and in ovarian cancer prediction. Nucleic Acids Res. 2016 12 15; 44(22):10879-10897.
Couturier AM, Fleury H, Patenaude AM, Bentley VL, Rodrigue A, Coulombe Y, Niraj J, Pauty J, Berman JN, Dellaire G, Di Noia JM, Mes-Masson AM, Masson JY. PMID: 27924011; PMCID: PMC5159559.
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PubMed Mentions:
28 Fields:
Translation:
HumansAnimalsCells
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Using zebrafish models of leukemia to streamline drug screening and discovery. Exp Hematol. 2017 Jan; 45:1-9.
Deveau AP, Bentley VL, Berman JN. PMID: 27720937.
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PubMed Mentions:
16 Fields:
Translation:
HumansAnimals
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Insert, remove or replace: A highly advanced genome editing system using CRISPR/Cas9. Biochim Biophys Acta. 2016 Sep; 1863(9):2333-44.
Ceasar SA, Rajan V, Prykhozhij SV, Berman JN, Ignacimuthu S. PMID: 27350235.
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PubMed Mentions:
48 Fields:
Translation:
Animals
-
Study of Glycine and Folic Acid Supplementation to Ameliorate Transfusion Dependence in Congenital SLC25A38 Mutated Sideroblastic Anemia. Pediatr Blood Cancer. 2016 07; 63(7):1307-9.
LeBlanc MA, Bettle A, Berman JN, Price VE, Pambrun C, Yu Z, Tiller M, McMaster CR, Fernandez CV. PMID: 27038157.
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PubMed Mentions:
6 Fields:
Translation:
Humans
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Characterization of the Zebrafish Homolog of β-Glucosidase 2: A Target of the Drug Miglustat. Zebrafish. 2016 06; 13(3):177-87.
Sultana S, Truong NY, Vieira DB, Wigger JG, Forrester AM, Veinotte CJ, Berman JN, van der Spoel AC. PMID: 26909767.
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PubMed Mentions:
6 Fields:
Translation:
AnimalsCells
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Glycine and Folate Ameliorate Models of Congenital Sideroblastic Anemia. PLoS Genet. 2016 Jan; 12(1):e1005783.
Fernández-Murray JP, Prykhozhij SV, Dufay JN, Steele SL, Gaston D, Nasrallah GK, Coombs AJ, Liwski RS, Fernandez CV, Berman JN, McMaster CR. PMID: 26821380; PMCID: PMC4731144.
View in:
PubMed Mentions:
28 Fields:
Translation:
HumansAnimalsCells
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The Zebrafish Xenograft Platform: Evolution of a Novel Cancer Model and Preclinical Screening Tool. Adv Exp Med Biol. 2016; 916:289-314.
Wertman J, Veinotte CJ, Dellaire G, Berman JN. PMID: 27165359.
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PubMed Mentions:
42 Fields:
Translation:
HumansAnimals
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Modeling Leukemogenesis in the Zebrafish Using Genetic and Xenograft Models. Methods Mol Biol. 2016; 1451:171-89.
Rajan V, Dellaire G, Berman JN. PMID: 27464808.
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PubMed Mentions:
5 Fields:
Translation:
HumansAnimals
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A Guide to Computational Tools and Design Strategies for Genome Editing Experiments in Zebrafish Using CRISPR/Cas9. Zebrafish. 2016 Feb; 13(1):70-3.
Prykhozhij SV, Rajan V, Berman JN. PMID: 26683213.
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PubMed Mentions:
5 Fields:
Translation:
Animals
-
Correction: CRISPR MultiTargeter: A Web Tool to Find Common and Unique CRISPR Single Guide RNA Targets in a Set of Similar Sequences. PLoS One. 2015; 10(9):e0138634.
Prykhozhij SV, Rajan V, Gaston D, Berman JN. PMID: 26367008; PMCID: PMC4569490.
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PubMed Mentions:
2 Fields:
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Bone marrow failure and developmental delay caused by mutations in poly(A)-specific ribonuclease (PARN). J Med Genet. 2015 Nov; 52(11):738-48.
Dhanraj S, Gunja SM, Deveau AP, Nissbeck M, Boonyawat B, Coombs AJ, Renieri A, Mucciolo M, Marozza A, Buoni S, Turner L, Li H, Jarrar A, Sabanayagam M, Kirby M, Shago M, Pinto D, Berman JN, Scherer SW, Virtanen A, Dror Y. PMID: 26342108.
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PubMed Mentions:
51 Fields:
Translation:
HumansAnimalsCells
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Translational Activation of HIF1α by YB-1 Promotes Sarcoma Metastasis. Cancer Cell. 2015 May 11; 27(5):682-97.
El-Naggar AM, Veinotte CJ, Cheng H, Grunewald TG, Negri GL, Somasekharan SP, Corkery DP, Tirode F, Mathers J, Khan D, Kyle AH, Baker JH, LePard NE, McKinney S, Hajee S, Bosiljcic M, Leprivier G, Tognon CE, Minchinton AI, Bennewith KL, Delattre O, Wang Y, Dellaire G, Berman JN, Sorensen PH. PMID: 25965573.
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PubMed Mentions:
156 Fields:
Translation:
HumansCells
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CRISPR multitargeter: a web tool to find common and unique CRISPR single guide RNA targets in a set of similar sequences. PLoS One. 2015; 10(3):e0119372.
Prykhozhij SV, Rajan V, Gaston D, Berman JN. PMID: 25742428; PMCID: PMC4351176.
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PubMed Mentions:
61 Fields:
Translation:
AnimalsCells
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Mast cell development and function in the zebrafish. Methods Mol Biol. 2015; 1220:29-57.
Da'as SI, Balci TB, Berman JN. PMID: 25388243.
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PubMed Mentions:
4 Fields:
Translation:
HumansAnimalsCells
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Visnagin protects against doxorubicin-induced cardiomyopathy through modulation of mitochondrial malate dehydrogenase. Sci Transl Med. 2014 Dec 10; 6(266):266ra170.
Liu Y, Asnani A, Zou L, Bentley VL, Yu M, Wang Y, Dellaire G, Sarkar KS, Dai M, Chen HH, Sosnovik DE, Shin JT, Haber DA, Berman JN, Chao W, Peterson RT. PMID: 25504881; PMCID: PMC4360984.
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PubMed Mentions:
59 Fields:
Translation:
HumansAnimalsCells
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Hematopoietic neck lesions. Atlas Oral Maxillofac Surg Clin North Am. 2015 Mar; 23(1):31-7.
Lubek JE, Shihabi A, Murphy LA, Berman JN. PMID: 25707563.
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PubMed Mentions:
1 Fields:
Translation:
Humans
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Focused chemical genomics using zebrafish xenotransplantation as a pre-clinical therapeutic platform for T-cell acute lymphoblastic leukemia. Haematologica. 2015 Jan; 100(1):70-6.
Bentley VL, Veinotte CJ, Corkery DP, Pinder JB, LeBlanc MA, Bedard K, Weng AP, Berman JN, Dellaire G. PMID: 25281505; PMCID: PMC4281315.
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PubMed Mentions:
52 Fields:
Translation:
HumansAnimalsCells
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Mast cells protect against Pseudomonas aeruginosa-induced lung injury. Am J Pathol. 2014 Aug; 184(8):2310-21.
Junkins RD, Carrigan SO, Wu Z, Stadnyk AW, Cowley E, Issekutz T, Berman J, Lin TJ. PMID: 25043620.
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PubMed Mentions:
11 Fields:
Translation:
HumansAnimalsCells
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Optimized cell transplantation using adult rag2 mutant zebrafish. Nat Methods. 2014 Aug; 11(8):821-4.
Tang Q, Abdelfattah NS, Blackburn JS, Moore JC, Martinez SA, Moore FE, Lobbardi R, Tenente IM, Ignatius MS, Berman JN, Liwski RS, Houvras Y, Langenau DM. PMID: 25042784; PMCID: PMC4294527.
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PubMed Mentions:
67 Fields:
Translation:
HumansAnimals
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A transgenic zebrafish model expressing KIT-D816V recapitulates features of aggressive systemic mastocytosis. Br J Haematol. 2014 Oct; 167(1):48-61.
Balci TB, Prykhozhij SV, Teh EM, Da'as SI, McBride E, Liwski R, Chute IC, Leger D, Lewis SM, Berman JN. PMID: 24989799.
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PubMed Mentions:
11 Fields:
Translation:
HumansAnimalsCells
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Hooking the big one: the potential of zebrafish xenotransplantation to reform cancer drug screening in the genomic era. Dis Model Mech. 2014 Jul; 7(7):745-54.
Veinotte CJ, Dellaire G, Berman JN. PMID: 24973744; PMCID: PMC4073264.
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PubMed Mentions:
88 Fields:
Translation:
HumansAnimals
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The progress and promise of zebrafish as a model to study mast cells. Dev Comp Immunol. 2014 Sep; 46(1):74-83.
Prykhozhij SV, Berman JN. PMID: 24508982.
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PubMed Mentions:
4 Fields:
Translation:
HumansAnimalsCells
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Calcineurin-Rcan1 interaction contributes to stem cell factor-mediated mast cell activation. J Immunol. 2013 Dec 15; 191(12):5885-94.
Wu Z, Li Y, MacNeil AJ, Junkins RD, Berman JN, Lin TJ. PMID: 24218457.
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PubMed Mentions:
12 Fields:
Translation:
HumansAnimalsCells
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Zebrafish as a model system for mitochondrial biology and diseases. Transl Res. 2014 Feb; 163(2):79-98.
Steele SL, Prykhozhij SV, Berman JN. PMID: 24055494.
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PubMed Mentions:
22 Fields:
Translation:
AnimalsCells
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Mast cell FcεRI-induced early growth response 2 regulates CC chemokine ligand 1-dependent CD4+ T cell migration. J Immunol. 2013 May 01; 190(9):4500-7.
Wu Z, Macneil AJ, Junkins R, Li B, Berman JN, Lin TJ. PMID: 23536637.
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PubMed Mentions:
15 Fields:
Translation:
AnimalsCells
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Syntaxin binding protein 1 is not required for allergic inflammation via IgE-mediated mast cell activation. PLoS One. 2013; 8(3):e58560.
Wu Z, MacNeil AJ, Berman JN, Lin TJ. PMID: 23484036; PMCID: PMC3590206.
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PubMed Mentions:
5 Fields:
Translation:
AnimalsCells
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Investigations regarding the utility of prodigiosenes to treat leukemia. Org Biomol Chem. 2013 Jan 07; 11(1):62-8.
Smithen DA, Forrester AM, Corkery DP, Dellaire G, Colpitts J, McFarland SA, Berman JN, Thompson A. PMID: 23070266.
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PubMed Mentions:
9 Fields:
Translation:
HumansAnimalsCells
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Hace1 controls ROS generation of vertebrate Rac1-dependent NADPH oxidase complexes. Nat Commun. 2013; 4:2180.
Daugaard M, Nitsch R, Razaghi B, McDonald L, Jarrar A, Torrino S, Castillo-Lluva S, Rotblat B, Li L, Malliri A, Lemichez E, Mettouchi A, Berman JN, Penninger JM, Sorensen PH. PMID: 23864022; PMCID: PMC3759041.
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PubMed Mentions:
60 Fields:
Translation:
HumansAnimalsCells
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The zebrafish as a tool to study hematopoiesis, human blood diseases, and immune function. Adv Hematol. 2012; 2012:425345.
Berman J, Payne E, Hall C. PMID: 23082077; PMCID: PMC3469079.
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PubMed Mentions:
3
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Zebrafish xenografts as a tool for in vivo studies on human cancer. Ann N Y Acad Sci. 2012 Aug; 1266:124-37.
Konantz M, Balci TB, Hartwig UF, Dellaire G, André MC, Berman JN, Lengerke C. PMID: 22901264.
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PubMed Mentions:
92 Fields:
Translation:
HumansAnimalsCells
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Myelopoiesis and myeloid leukaemogenesis in the zebrafish. Adv Hematol. 2012; 2012:358518.
Forrester AM, Berman JN, Payne EM. PMID: 22851971; PMCID: PMC3407620.
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PubMed Mentions:
5
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The zebrafish reveals dependence of the mast cell lineage on Notch signaling in vivo. Blood. 2012 Apr 12; 119(15):3585-94.
Da'as SI, Coombs AJ, Balci TB, Grondin CA, Ferrando AA, Berman JN. PMID: 22368273; PMCID: PMC3375148.
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PubMed Mentions:
13 Fields:
Translation:
AnimalsCells
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A unique role of GATA1s in Down syndrome acute megakaryocytic leukemia biology and therapy. PLoS One. 2011; 6(11):e27486.
Xavier AC, Edwards H, Dombkowski AA, Balci TB, Berman JN, Dellaire G, Xie C, Buck SA, Matherly LH, Ge Y, Taub JW. PMID: 22110660; PMCID: PMC3217966.
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PubMed Mentions:
5 Fields:
Translation:
HumansCells
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NUP98-HOXA9-transgenic zebrafish develop a myeloproliferative neoplasm and provide new insight into mechanisms of myeloid leukaemogenesis. Br J Haematol. 2011 Oct; 155(2):167-81.
Forrester AM, Grabher C, McBride ER, Boyd ER, Vigerstad MH, Edgar A, Kai FB, Da'as SI, Payne E, Look AT, Berman JN. PMID: 21810091.
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PubMed Mentions:
35 Fields:
Translation:
HumansAnimalsCells
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Using MS-MLPA as an efficient screening tool for detecting 9p21 abnormalities in pediatric acute lymphoblastic leukemia. Pediatr Blood Cancer. 2012 Jun; 58(6):852-9.
Gardiner RB, Morash BA, Riddell C, Wang H, Fernandez CV, Yhap M, Berman JN. PMID: 21796768.
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PubMed Mentions:
2 Fields:
Translation:
HumansCells
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Regulator of calcineurin 1 (Rcan1) is required for the development of pulmonary eosinophilia in allergic inflammation in mice. Am J Pathol. 2011 Sep; 179(3):1199-210.
Yang YJ, Macneil AJ, Junkins R, Carrigan SO, Tang JT, Forward N, Hoskin D, Berman JN, Lin TJ. PMID: 21741935; PMCID: PMC3157212.
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PubMed Mentions:
7 Fields:
Translation:
AnimalsCells
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Leukaemia xenotransplantation in zebrafish--chemotherapy response assay in vivo. Br J Haematol. 2011 Jun; 153(6):786-9.
Corkery DP, Dellaire G, Berman JN. PMID: 21517816.
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PubMed Mentions:
57 Fields:
Translation:
HumansAnimals
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Regulation of S100A10 by the PML-RAR-α oncoprotein. Blood. 2011 Apr 14; 117(15):4095-105.
O'Connell PA, Madureira PA, Berman JN, Liwski RS, Waisman DM. PMID: 21310922.
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PubMed Mentions:
38 Fields:
Translation:
HumansCells
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Zebrafish mast cells possess an FcɛRI-like receptor and participate in innate and adaptive immune responses. Dev Comp Immunol. 2011 Jan; 35(1):125-34.
Da'as S, Teh EM, Dobson JT, Nasrallah GK, McBride ER, Wang H, Neuberg DS, Marshall JS, Lin TJ, Berman JN. PMID: 20849876.
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PubMed Mentions:
21 Fields:
Translation:
HumansAnimalsCells
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The Hox cofactors Meis1 and Pbx act upstream of gata1 to regulate primitive hematopoiesis. Dev Biol. 2010 Apr 15; 340(2):306-17.
Pillay LM, Forrester AM, Erickson T, Berman JN, Waskiewicz AJ. PMID: 20123093.
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PubMed Mentions:
30 Fields:
Translation:
AnimalsCells
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The impact of prophylactic fresh-frozen plasma and cryoprecipitate on the incidence of central nervous system thrombosis and hemorrhage in children with acute lymphoblastic leukemia receiving asparaginase. Blood. 2009 Dec 10; 114(25):5146-51.
Abbott LS, Deevska M, Fernandez CV, Dix D, Price VE, Wang H, Parker L, Yhap M, Fitzgerald C, Barnard DR, Berman JN. PMID: 19822902.
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PubMed Mentions:
19 Fields:
Translation:
Humans
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Cladribine inhibits a diltiazem-induced increase in red blood cell purine nucleotide concentrations in a zebrafish model. Biomarkers. 2009 Dec; 14(8):554-9.
Klein LC, Yeung PK, Berman JN. PMID: 20001707.
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PubMed Mentions:
3 Fields:
Translation:
AnimalsCells
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Fluorescence-activated cell sorting (FACS) of whole mount in situ hybridization (WISH) labelled haematopoietic cell populations in the zebrafish. Br J Haematol. 2009 Mar; 144(5):732-5.
Dobson JT, Da'as S, McBride ER, Berman JN. PMID: 19133983.
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PubMed Mentions:
6 Fields:
Translation:
AnimalsCells
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Rcan1 negatively regulates Fc epsilonRI-mediated signaling and mast cell function. J Exp Med. 2009 Jan 16; 206(1):195-207.
Yang YJ, Chen W, Edgar A, Li B, Molkentin JD, Berman JN, Lin TJ. PMID: 19124655; PMCID: PMC2626669.
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PubMed Mentions:
17 Fields:
Translation:
AnimalsCells
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JAK2 V617F positive polycythemia Vera in a child with neurofibromatosis type I. Pediatr Blood Cancer. 2008 Nov; 51(5):689-91.
Berman JN, Greer WL, Archambeault S, Loh ML, Riddell C, Morash B, Dumas N, Fernandez CV, Ludman MD. PMID: 18623221.
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PubMed Mentions:
1 Fields:
Translation:
Humans
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TRAF6 specifically contributes to FcepsilonRI-mediated cytokine production but not mast cell degranulation. J Biol Chem. 2008 Nov 14; 283(46):32110-8.
Yang YJ, Chen W, Carrigan SO, Chen WM, Roth K, Akiyama T, Inoue J, Marshall JS, Berman JN, Lin TJ. PMID: 18772140.
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PubMed Mentions:
19 Fields:
Translation:
AnimalsCells
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Carboxypeptidase A5 identifies a novel mast cell lineage in the zebrafish providing new insight into mast cell fate determination. Blood. 2008 Oct 01; 112(7):2969-72.
Dobson JT, Seibert J, Teh EM, Da'as S, Fraser RB, Paw BH, Lin TJ, Berman JN. PMID: 18635811.
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PubMed Mentions:
46 Fields:
Translation:
AnimalsCells
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Routine bone marrow examination in the initial evaluation of paediatric Hodgkin lymphoma: the Canadian perspective. Br J Haematol. 2008 Jun; 141(6):820-6.
Simpson CD, Gao J, Fernandez CV, Yhap M, Price VE, Berman JN. PMID: 18422997.
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PubMed Mentions:
1 Fields:
Translation:
Humans
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The early growth response factor-1 contributes to interleukin-13 production by mast cells in response to stem cell factor stimulation. J Immunotoxicol. 2008 Apr; 5(2):163-71.
Li B, Berman J, Wu P, Liu F, Tang JT, Lin TJ. PMID: 18569387.
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PubMed Mentions:
4 Fields:
Translation:
HumansAnimalsCells
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The early growth response factor-1 is involved in stem cell factor (SCF)-induced interleukin 13 production by mast cells, but is dispensable for SCF-dependent mast cell growth. J Biol Chem. 2007 Aug 03; 282(31):22573-81.
Li B, Berman J, Tang JT, Lin TJ. PMID: 17556359.
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PubMed Mentions:
13 Fields:
Translation:
AnimalsCells
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Targeting transcription factors in acute leukemia in children. Curr Drug Targets. 2007 Jun; 8(6):727-37.
Berman JN, Look AT. PMID: 17584028.
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PubMed Mentions:
7 Fields:
Translation:
HumansCells
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Current and future approaches for the therapeutic targeting of metastasis (review). Int J Mol Med. 2006 Dec; 18(6):1025-36.
Germanov E, Berman JN, Guernsey DL. PMID: 17089005.
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PubMed Mentions:
7 Fields:
Translation:
HumansAnimalsCells
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Zebrafish as a model for myelopoiesis during embryogenesis. Exp Hematol. 2005 Sep; 33(9):997-1006.
Berman JN, Kanki JP, Look AT. PMID: 16140147.
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PubMed Mentions:
26 Fields:
Translation:
Animals
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CD34+ cell selection is required to assess HOXA9 expression levels in patients with myelodysplastic syndrome. Br J Haematol. 2005 Jul; 130(1):83-6.
Heinrichs S, Berman JN, Ortiz TM, Kornblau SM, Neuberg DS, Estey EH, Look AT. PMID: 15982348.
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PubMed Mentions:
8 Fields:
Translation:
HumansCells
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The pu.1 promoter drives myeloid gene expression in zebrafish. Blood. 2004 Sep 01; 104(5):1291-7.
Hsu K, Traver D, Kutok JL, Hagen A, Liu TX, Paw BH, Rhodes J, Berman JN, Zon LI, Kanki JP, Look AT. PMID: 14996705.
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PubMed Mentions:
63 Fields:
Translation:
AnimalsCells
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Zebrafish as a model organism for blood diseases. Br J Haematol. 2003 Nov; 123(4):568-76.
Berman J, Hsu K, Look AT. PMID: 14616958.
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PubMed Mentions:
12 Fields:
Translation:
HumansAnimals