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Frederick Archer

Title(s)Associate Adjunct Professor, Scripps Institution of Oceanography Department
SchoolMarine Sciences
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Hartmann AC, Marhaver KL, Klueter A, Lovci MT, Closek CJ, Diaz E, Chamberland VF, Archer FI, Deheyn DD, Vermeij MJA, Medina M. Acquisition of obligate mutualist symbionts during the larval stage is not beneficial for a coral host. Mol Ecol. 2019 Jan; 28(1):141-155. PMID: 30506836.
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    2. Milligan BG, Archer FI, Ferchaud AL, Hand BK, Kierepka EM, Waples RS. Disentangling genetic structure for genetic monitoring of complex populations. Evol Appl. 2018 Aug; 11(7):1149-1161. PMID: 30026803.
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    3. Jost L, Archer F, Flanagan S, Gaggiotti O, Hoban S, Latch E. Differentiation measures for conservation genetics. Evol Appl. 2018 Aug; 11(7):1139-1148. PMID: 30026802.
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    4. Klueter A, Trapani J, Archer FI, McIlroy SE, Coffroth MA. Comparative growth rates of cultured marine dinoflagellates in the genus Symbiodinium and the effects of temperature and light. PLoS One. 2017; 12(11):e0187707. PMID: 29186143.
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    5. Hartmann AC, Petras D, Quinn RA, Protsyuk I, Archer FI, Ransome E, Williams GJ, Bailey BA, Vermeij MJA, Alexandrov T, Dorrestein PC, Rohwer FL. Meta-mass shift chemical profiling of metabolomes from coral reefs. Proc Natl Acad Sci U S A. 2017 10 31; 114(44):11685-11690. PMID: 29078340.
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    6. Leduc RG, Archer FI, Lang AR, Martien KK, Hancock-Hanser B, Torres-Florez JP, Hucke-Gaete R, Rosenbaum HC, van Waerebeek K, Brownell RL, Taylor BL. Genetic variation in blue whales in the eastern pacific: implication for taxonomy and use of common wintering grounds. Mol Ecol. 2017 Feb; 26(3):740-751. PMID: 27891694.
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    7. Parobek CM, Archer FI, DePrenger-Levin ME, Hoban SM, Liggins L, Strand AE. skelesim: an extensible, general framework for population genetic simulation in R. Mol Ecol Resour. 2017 Jan; 17(1):101-109. PMID: 27736016.
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    8. Jombart T, Archer F, Schliep K, Kamvar Z, Harris R, Paradis E, Goudet J, Lapp H. apex: phylogenetics with multiple genes. Mol Ecol Resour. 2017 Jan; 17(1):19-26. PMID: 27417145.
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    9. Archer FI, Adams PE, Schneiders BB. stratag: An r package for manipulating, summarizing and analysing population genetic data. Mol Ecol Resour. 2017 Jan; 17(1):5-11. PMID: 27327208.
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    10. Morin PA, Parsons KM, Archer FI, Ávila-Arcos MC, Barrett-Lennard LG, Dalla Rosa L, Duchêne S, Durban JW, Ellis GM, Ferguson SH, Ford JK, Ford MJ, Garilao C, Gilbert MT, Kaschner K, Matkin CO, Petersen SD, Robertson KM, Visser IN, Wade PR, Ho SY, Foote AD. Geographic and temporal dynamics of a global radiation and diversification in the killer whale. Mol Ecol. 2015 Aug; 24(15):3964-79. PMID: 26087773.
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    11. Klueter A, Crandall JB, Archer FI, Teece MA, Coffroth MA. Taxonomic and environmental variation of metabolite profiles in marine dinoflagellates of the genus symbiodinium. Metabolites. 2015 Feb 16; 5(1):74-99. PMID: 25693143.
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    12. Martien KK, Chivers SJ, Baird RW, Archer FI, Gorgone AM, Hancock-Hanser BL, Mattila D, McSweeney DJ, Oleson EM, Palmer C, Pease VL, Robertson KM, Schorr GS, Schultz MB, Webster DL, Taylor BL. Nuclear and mitochondrial patterns of population structure in North Pacific false killer whales (Pseudorca crassidens). J Hered. 2014 Sep-Oct; 105(5):611-26. PMID: 24831238.
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    13. Archer FI, Morin PA, Hancock-Hanser BL, Robertson KM, Leslie MS, Bérubé M, Panigada S, Taylor BL. Mitogenomic phylogenetics of fin whales (Balaenoptera physalus spp.): genetic evidence for revision of subspecies. PLoS One. 2013; 8(5):e63396. PMID: 23691042; PMCID: PMC3656932.
    14. Hancock-Hanser BL, Frey A, Leslie MS, Dutton PH, Archer FI, Morin PA. Targeted multiplex next-generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics. Mol Ecol Resour. 2013 Mar; 13(2):254-68. PMID: 23351075.
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    15. Duchêne S, Archer FI, Vilstrup J, Caballero S, Morin PA. Mitogenome phylogenetics: the impact of using single regions and partitioning schemes on topology, substitution rate and divergence time estimation. PLoS One. 2011; 6(11):e27138. PMID: 22073275.
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    16. Mesnick SL, Taylor BL, Archer FI, Martien KK, Treviño SE, Hancock-Hanser BL, Moreno Medina SC, Pease VL, Robertson KM, Straley JM, Baird RW, Calambokidis J, Schorr GS, Wade P, Burkanov V, Lunsford CR, Rendell L, Morin PA. Sperm whale population structure in the eastern and central North Pacific inferred by the use of single-nucleotide polymorphisms, microsatellites and mitochondrial DNA. Mol Ecol Resour. 2011 Mar; 11 Suppl 1:278-98. PMID: 21429181.
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    17. Morin PA, Archer FI, Foote AD, Vilstrup J, Allen EE, Wade P, Durban J, Parsons K, Pitman R, Li L, Bouffard P, Abel Nielsen SC, Rasmussen M, Willerslev E, Gilbert MT, Harkins T. Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species. Genome Res. 2010 Jul; 20(7):908-16. PMID: 20413674.
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    18. Morin PA, Martien KK, Archer FI, Cipriano F, Steel D, Jackson J, Taylor BL. Applied conservation genetics and the need for quality control and reporting of genetic data used in fisheries and wildlife management. J Hered. 2010 Jan-Feb; 101(1):1-10. PMID: 19959596.
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    19. Morin PA, Leduc RG, Archer FI, Martien KK, Huebinger R, Bickham JW, Taylor BL. Significant deviations from Hardy-Weinberg equilibrium caused by low levels of microsatellite genotyping errors. Mol Ecol Resour. 2009 Mar; 9(2):498-504. PMID: 21564679.
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