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Olga Dudko

Title(s)Professor, Physics
SchoolVc-academic Affairs
Address9500 Gilman Drive #0319
La Jolla CA 92093
Phone8/5-34--8340
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Chromosome dynamics near the sol-gel phase transition dictate the timing of remote genomic interactions. Nat Commun. 2019 06 24; 10(1):2771. Khanna N, Zhang Y, Lucas JS, Dudko OK, Murre C. PMID: 31235807.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    2. Distinguishing Signatures of Multipathway Conformational Transitions. Phys Rev Lett. 2017 Feb 24; 118(8):088101. Pierse CA, Dudko OK. PMID: 28282172.
      View in: PubMed   Mentions: 12     Fields:    
    3. First-Passage Processes in the Genome. Annu Rev Biophys. 2016 07 05; 45:117-34. Zhang Y, Dudko OK. PMID: 27391924.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    4. Decoding the mechanical fingerprints of biomolecules. Q Rev Biophys. 2016 Jan; 49:e3. Dudko OK. PMID: 26498560.
      View in: PubMed   Mentions: 1     Fields:    
    5. Statistical mechanics of viral entry. Phys Rev Lett. 2015 Jan 09; 114(1):018104. Zhang Y, Dudko OK. PMID: 25615507.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    6. 3D trajectories adopted by coding and regulatory DNA elements: first-passage times for genomic interactions. Cell. 2014 Jul 17; 158(2):339-352. Lucas JS, Zhang Y, Dudko OK, Murre C. PMID: 24998931.
      View in: PubMed   Mentions: 56     Fields:    Translation:AnimalsCells
    7. Conformational dynamics through an intermediate. J Chem Phys. 2014 Apr 07; 140(13):135101. Garai A, Zhang Y, Dudko OK. PMID: 24712815.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    8. Kinetics and energetics of biomolecular folding and binding. Biophys J. 2013 Nov 05; 105(9):L19-22. Pierse CA, Dudko OK. PMID: 24209869.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    9. A transformation for the mechanical fingerprints of complex biomolecular interactions. Proc Natl Acad Sci U S A. 2013 Oct 08; 110(41):16432-7. Zhang Y, Dudko OK. PMID: 24062442.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    10. Single molecules in an extension clamp: extracting rates and activation barriers. Phys Rev Lett. 2013 Apr 12; 110(15):158105. Suzuki Y, Dudko OK. PMID: 25167317.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    11. Locating the barrier for folding of single molecules under an external force. Phys Rev Lett. 2011 Nov 11; 107(20):208301. Dudko OK, Graham TG, Best RB. PMID: 22181779.
      View in: PubMed   Mentions: 20     Fields:    Translation:Cells
    12. Biomolecules under mechanical stress: a simple mechanism of complex behavior. J Chem Phys. 2011 Feb 14; 134(6):065102. Suzuki Y, Dudko OK. PMID: 21322735.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    13. Single-molecule rupture dynamics on multidimensional landscapes. Phys Rev Lett. 2010 Jan 29; 104(4):048101. Suzuki Y, Dudko OK. PMID: 20366741.
      View in: PubMed   Mentions: 26     Fields:    
    14. Nanopore force spectroscopy tools for analyzing single biomolecular complexes. Methods Enzymol. 2010; 475:565-89. Dudko OK, Mathé J, Meller A. PMID: 20627171.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    15. An atomic force microscope nanoscalpel for nanolithography and biological applications. Nanotechnology. 2009 Nov 04; 20(44):445302. Beard JD, Burbridge DJ, Moskalenko AV, Dudko O, Yarova PL, Smirnov SV, Gordeev SN. PMID: 19801772.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    16. Single-molecule mechanics: new insights from the escape-over-a-barrier problem. Proc Natl Acad Sci U S A. 2009 Jun 02; 106(22):8795-6. Dudko OK. PMID: 19470467.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    17. Theory, analysis, and interpretation of single-molecule force spectroscopy experiments. Proc Natl Acad Sci U S A. 2008 Oct 14; 105(41):15755-60. Dudko OK, Hummer G, Szabo A. PMID: 18852468.
      View in: PubMed   Mentions: 174     Fields:    Translation:Cells
    18. Pulling direction as a reaction coordinate for the mechanical unfolding of single molecules. J Phys Chem B. 2008 May 15; 112(19):5968-76. Best RB, Paci E, Hummer G, Dudko OK. PMID: 18251532.
      View in: PubMed   Mentions: 46     Fields:    Translation:Cells
    19. Extracting kinetics from single-molecule force spectroscopy: nanopore unzipping of DNA hairpins. Biophys J. 2007 Jun 15; 92(12):4188-95. Dudko OK, Mathé J, Szabo A, Meller A, Hummer G. PMID: 17384066.
      View in: PubMed   Mentions: 56     Fields:    Translation:Cells
    20. Mean time-of-flight of photons in transillumination measurements of optically anisotropic tissue with an inclusion. Phys Med Biol. 2006 Sep 21; 51(18):4719-33. Dudko OK, Weiss GH, Chernomordik V. PMID: 16953052.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    21. Intrinsic rates and activation free energies from single-molecule pulling experiments. Phys Rev Lett. 2006 Mar 17; 96(10):108101. Dudko OK, Hummer G, Szabo A. PMID: 16605793.
      View in: PubMed   Mentions: 170     Fields:    Translation:Cells
    22. Global analysis of X-chromosome dosage compensation. J Biol. 2006; 5(1):3. Gupta V, Parisi M, Sturgill D, Nuttall R, Doctolero M, Dudko OK, Malley JD, Eastman PS, Oliver B. PMID: 16507155.
      View in: PubMed   Mentions: 146     Fields:    Translation:AnimalsCells
    23. Time-dependent diffusion coefficients in periodic porous materials. J Phys Chem B. 2005 Nov 17; 109(45):21296-9. Dudko OK, Berezhkovskii AM, Weiss GH. PMID: 16853761.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    24. Time-dependent rate coefficients for diffusion-influenced reactions with centrosymmetric potentials. J Phys Chem B. 2005 Mar 31; 109(12):5891-4. Dudko OK, Szabo A. PMID: 16851641.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    25. Estimation of anisotropic optical parameters of tissue in a slab geometry. Biophys J. 2005 May; 88(5):3205-11. Dudko OK, Weiss GH. PMID: 15731380.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    26. Diffusion in the presence of periodically spaced permeable membranes. J Chem Phys. 2004 Dec 08; 121(22):11283-8. Dudko OK, Berezhkovskii AM, Weiss GH. PMID: 15634083.
      View in: PubMed   Mentions: 4     Fields:    
    27. Photon migration in turbid media with anisotropic optical properties. Phys Med Biol. 2004 Sep 07; 49(17):3979-89. Dudko OK, Weiss GH, Chernomordik V, Gandjbakhche AH. PMID: 15470918.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    28. Rate constant for diffusion-influenced ligand binding to receptors of arbitrary shape on a cell surface. J Chem Phys. 2004 Jul 15; 121(3):1562-5. Dudko OK, Berezhkovskii AM, Weiss GH. PMID: 15260704.
      View in: PubMed   Mentions: 6     Fields:    Translation:Cells
    29. Beyond the conventional description of dynamic force spectroscopy of adhesion bonds. Proc Natl Acad Sci U S A. 2003 Sep 30; 100(20):11378-81. Dudko OK, Filippov AE, Klafter J, Urbakh M. PMID: 13679588.
      View in: PubMed   Mentions: 44     Fields:    
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