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Jose Pruneda-Paz

Title(s)Assistant Professor, Cell and Developmental Biology
SchoolAcademic Aff
Address9500 Gilman Drive #0116
La Jolla CA 92093
Phone858-534-8323
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    Collapse Research 
    Collapse Research Activities and Funding
    Genetic Analysis of Circadian Rhythms in Arabidopsis
    NIH/NIGMS R01GM056006Sep 1, 1996 - Nov 30, 2012
    Role: Co-Principal Investigator

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    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Multi-level Modulation of Light Signaling by GIGANTEA Regulates Both the Output and Pace of the Circadian Clock. Dev Cell. 2019 06 17; 49(6):840-851.e8. Nohales MA, Liu W, Duffy T, Nozue K, Sawa M, Pruneda-Paz JL, Maloof JN, Jacobsen SE, Kay SA. PMID: 31105011.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    2. High-Throughput Yeast One-Hybrid Screens Using a Cell Surface gLUC Reporter. Curr Protoc Plant Biol. 2019 03; 4(1):e20086. Li Z, Bonaldi K, Kang SE, Pruneda-Paz JL. PMID: 30742367.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    3. Interaction and Regulation Between Lipid Mediator Phosphatidic Acid and Circadian Clock Regulators. Plant Cell. 2019 02; 31(2):399-416. Kim SC, Nusinow DA, Sorkin ML, Pruneda-Paz J, Wang X. PMID: 30674693.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    4. Functional dissection of the ARGONAUTE7 promoter. Plant Direct. 2019 Jan; 3(1):e00102. Hoyer JS, Pruneda-Paz JL, Breton G, Hassert MA, Holcomb EE, Fowler H, Bauer KM, Mreen J, Kay SA, Carrington JC. PMID: 31245750.
      View in: PubMed   Mentions:
    5. ZINC-FINGER interactions mediate transcriptional regulation of hypocotyl growth in Arabidopsis. Proc Natl Acad Sci U S A. 2018 05 08; 115(19):E4503-E4511. Perrella G, Davidson MLH, O'Donnell L, Nastase AM, Herzyk P, Breton G, Pruneda-Paz JL, Kay SA, Chory J, Kaiserli E. PMID: 29686058.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    6. A Localized Pseudomonas syringae Infection Triggers Systemic Clock Responses in Arabidopsis. Curr Biol. 2018 02 19; 28(4):630-639.e4. Li Z, Bonaldi K, Uribe F, Pruneda-Paz JL. PMID: 29398214.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    7. Construction of Arabidopsis Transcription Factor ORFeome Collections and Identification of Protein-DNA Interactions by High-Throughput Yeast One-Hybrid Screens. Methods Mol Biol. 2018; 1794:151-182. Kang SE, Breton G, Pruneda-Paz JL. PMID: 29855956.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    8. Novel cell surface luciferase reporter for high-throughput yeast one-hybrid screens. Nucleic Acids Res. 2017 Oct 13; 45(18):e157. Bonaldi K, Li Z, Kang SE, Breton G, Pruneda-Paz JL. PMID: 28985361.
      View in: PubMed   Mentions: 3     Fields:    Translation:AnimalsCells
    9. Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis. Nat Genet. 2017 Oct; 49(10):1546-1552. Xiao J, Jin R, Yu X, Shen M, Wagner JD, Pai A, Song C, Zhuang M, Klasfeld S, He C, Santos AM, Helliwell C, Pruneda-Paz JL, Kay SA, Lin X, Cui S, Garcia MF, Clarenz O, Goodrich J, Zhang X, Austin RS, Bonasio R, Wagner D. PMID: 28825728.
      View in: PubMed   Mentions: 35     Fields:    Translation:AnimalsCells
    10. TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis. PLoS Genet. 2017 Jun; 13(6):e1006856. Kubota A, Ito S, Shim JS, Johnson RS, Song YH, Breton G, Goralogia GS, Kwon MS, Laboy Cintrón D, Koyama T, Ohme-Takagi M, Pruneda-Paz JL, Kay SA, MacCoss MJ, Imaizumi T. PMID: 28628608.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    11. Plant Stress Tolerance Requires Auxin-Sensitive Aux/IAA Transcriptional Repressors. Curr Biol. 2017 Feb 06; 27(3):437-444. Shani E, Salehin M, Zhang Y, Sanchez SE, Doherty C, Wang R, Mangado CC, Song L, Tal I, Pisanty O, Ecker JR, Kay SA, Pruneda-Paz J, Estelle M. PMID: 28111153.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    12. Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis. Proc Natl Acad Sci U S A. 2015 Aug 25; 112(34):E4802-10. Nagel DH, Doherty CJ, Pruneda-Paz JL, Schmitz RJ, Ecker JR, Kay SA. PMID: 26261339.
      View in: PubMed   Mentions: 59     Fields:    Translation:AnimalsCells
    13. Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid. Proc Natl Acad Sci U S A. 2015 Jul 28; 112(30):9166-73. Zheng XY, Zhou M, Yoo H, Pruneda-Paz JL, Spivey NW, Kay SA, Dong X. PMID: 26139525.
      View in: PubMed   Mentions: 37     Fields:    Translation:AnimalsCells
    14. An Arabidopsis gene regulatory network for secondary cell wall synthesis. Nature. 2015 Jan 29; 517(7536):571-5. Taylor-Teeples M, Lin L, de Lucas M, Turco G, Toal TW, Gaudinier A, Young NF, Trabucco GM, Veling MT, Lamothe R, Handakumbura PP, Xiong G, Wang C, Corwin J, Tsoukalas A, Zhang L, Ware D, Pauly M, Kliebenstein DJ, Dehesh K, Tagkopoulos I, Breton G, Pruneda-Paz JL, Ahnert SE, Kay SA, Hazen SP, Brady SM. PMID: 25533953.
      View in: PubMed   Mentions: 142     Fields:    Translation:AnimalsCells
    15. HsfB2b-mediated repression of PRR7 directs abiotic stress responses of the circadian clock. Proc Natl Acad Sci U S A. 2014 Nov 11; 111(45):16172-7. Kolmos E, Chow BY, Pruneda-Paz JL, Kay SA. PMID: 25352668.
      View in: PubMed   Mentions: 23     Fields:    Translation:Animals
    16. Control of plant stem cell function by conserved interacting transcriptional regulators. Nature. 2015 Jan 15; 517(7534):377-80. Zhou Y, Liu X, Engstrom EM, Nimchuk ZL, Pruneda-Paz JL, Tarr PT, Yan A, Kay SA, Meyerowitz EM. PMID: 25363783.
      View in: PubMed   Mentions: 44     Fields:    Translation:AnimalsCells
    17. Nitrate foraging by Arabidopsis roots is mediated by the transcription factor TCP20 through the systemic signaling pathway. Proc Natl Acad Sci U S A. 2014 Oct 21; 111(42):15267-72. Guan P, Wang R, Nacry P, Breton G, Kay SA, Pruneda-Paz JL, Davani A, Crawford NM. PMID: 25288754.
      View in: PubMed   Mentions: 43     Fields:    Translation:AnimalsCellsPHPublic Health
    18. FBH1 affects warm temperature responses in the Arabidopsis circadian clock. Proc Natl Acad Sci U S A. 2014 Oct 07; 111(40):14595-600. Nagel DH, Pruneda-Paz JL, Kay SA. PMID: 25246594.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    19. A genome-scale resource for the functional characterization of Arabidopsis transcription factors. Cell Rep. 2014 Jul 24; 8(2):622-32. Pruneda-Paz JL, Breton G, Nagel DH, Kang SE, Bonaldi K, Doherty CJ, Ravelo S, Galli M, Ecker JR, Kay SA. PMID: 25043187.
      View in: PubMed   Mentions: 44     Fields:    Translation:Animals
    20. Transcriptional regulation of LUX by CBF1 mediates cold input to the circadian clock in Arabidopsis. Curr Biol. 2014 Jul 07; 24(13):1518-24. Chow BY, Sanchez SE, Breton G, Pruneda-Paz JL, Krogan NT, Kay SA. PMID: 24954045.
      View in: PubMed   Mentions: 15     Fields:    Translation:Animals
    21. Linking photoreceptor excitation to changes in plant architecture. Genes Dev. 2012 Apr 15; 26(8):785-90. Li L, Ljung K, Breton G, Schmitz RJ, Pruneda-Paz J, Cowing-Zitron C, Cole BJ, Ivans LJ, Pedmale UV, Jung HS, Ecker JR, Kay SA, Chory J. PMID: 22508725.
      View in: PubMed   Mentions: 128     Fields:    Translation:Animals
    22. Enhanced Y1H assays for Arabidopsis. Nat Methods. 2011 Oct 30; 8(12):1053-5. Gaudinier A, Zhang L, Reece-Hoyes JS, Taylor-Teeples M, Pu L, Liu Z, Breton G, Pruneda-Paz JL, Kim D, Kay SA, Walhout AJ, Ware D, Brady SM. PMID: 22037706.
      View in: PubMed   Mentions: 34     Fields:    Translation:AnimalsCells
    23. An expanding universe of circadian networks in higher plants. Trends Plant Sci. 2010 May; 15(5):259-65. Pruneda-Paz JL, Kay SA. PMID: 20382065.
      View in: PubMed   Mentions: 75     Fields:    Translation:HumansAnimalsCells
    24. A functional genomics approach reveals CHE as a component of the Arabidopsis circadian clock. Science. 2009 Mar 13; 323(5920):1481-5. Pruneda-Paz JL, Breton G, Para A, Kay SA. PMID: 19286557.
      View in: PubMed   Mentions: 192     Fields:    Translation:AnimalsCells
    25. LUX ARRHYTHMO encodes a Myb domain protein essential for circadian rhythms. Proc Natl Acad Sci U S A. 2005 Jul 19; 102(29):10387-92. Hazen SP, Schultz TF, Pruneda-Paz JL, Borevitz JO, Ecker JR, Kay SA. PMID: 16006522.
      View in: PubMed   Mentions: 149     Fields:    Translation:Animals
    26. Rapid array mapping of circadian clock and developmental mutations in Arabidopsis. Plant Physiol. 2005 Jun; 138(2):990-7. Hazen SP, Borevitz JO, Harmon FG, Pruneda-Paz JL, Schultz TF, Yanovsky MJ, Liljegren SJ, Ecker JR, Kay SA. PMID: 15908595.
      View in: PubMed   Mentions: 46     Fields:    Translation:AnimalsCells
    27. Bone marrow plasmacytoid dendritic cells can differentiate into myeloid dendritic cells upon virus infection. Nat Immunol. 2004 Dec; 5(12):1227-34. Zuniga EI, McGavern DB, Pruneda-Paz JL, Teng C, Oldstone MB. PMID: 15531885.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
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