Jonathan Parkinson

Title(s)Sr Bioinfo Analyst, Chemistry and Biochemistry
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. RESP2: An uncertainty aware multi-target multi-property optimization AI pipeline for antibody discovery. bioRxiv. 2024 Jul 31. Parkinson J, Hard R, Ko YS, Wang W. PMID: 39131296; PMCID: PMC11312550.
      View in: PubMed   Mentions:
    2. TUnA: an uncertainty-aware transformer model for sequence-based protein-protein interaction prediction. Brief Bioinform. 2024 Jul 25; 25(5). Ko YS, Parkinson J, Liu C, Wang W. PMID: 39051117; PMCID: PMC11269822.
      View in: PubMed   Mentions: 1     Fields:    
    3. For antibody sequence generative modeling, mixture models may be all you need. Bioinformatics. 2024 May 02; 40(5). Parkinson J, Wang W. PMID: 38652603; PMCID: PMC11093529.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    4. The RESP AI model accelerates the identification of tight-binding antibodies. Nat Commun. 2023 01 28; 14(1):454. Parkinson J, Hard R, Wang W. PMID: 36709319; PMCID: PMC9884274.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    5. Engineering human JMJD2A tudor domains for an improved understanding of histone peptide recognition. Proteins. 2023 01; 91(1):32-46. Parkinson J, Hard R, Ainsworth R, Wang W. PMID: 35927178; PMCID: PMC9771871.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
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