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Conservation of Affinity Rather Than Sequence Underlies a Dynamic Evolution of the Motif-Mediated p53/MDM2 Interaction in Ray-Finned Fishes. Mol Biol Evol. 2024 Feb 01; 41(2).
Mihalic F, Arcila D, Pettersson ME, Farkhondehkish P, Andersson E, Andersson L, Betancur-R R, Jemth P. PMID: 38301272; PMCID: PMC10901556.
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Gene loss and relaxed selection of plaat1 in vertebrates adapted to low-light environments. bioRxiv. 2023 Dec 13.
Drabeck DH, Wiese J, Gilbertson E, Arroyave J, Arcila D, Alter SE, Borowsky R, Hendrickson D, Stiassny M, McGaugh SE. PMID: 38168154; PMCID: PMC10760033.
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Many ways to build an angler: diversity of feeding morphologies in a deep-sea evolutionary radiation. Biol Lett. 2023 06; 19(6):20230049.
Heiple Z, Huie JM, Medeiros APM, Hart PB, Goatley CHR, Arcila D, Miller EC. PMID: 37376854; PMCID: PMC10300507.
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Animals
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Transcriptomic analysis provides insight into the mechanism of IKKβ-mediated suppression of HPV18E6-induced cellular abnormalities. G3 (Bethesda). 2023 04 11; 13(4).
Collins QP, Grunsted MJ, Arcila D, Xiong Y, Padash Barmchi M. PMID: 36722216; PMCID: PMC10085804.
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Comparative phylogeography reveals widespread cryptic diversity driven by ecology in Panamanian birds. bioRxiv. 2023 Mar 16.
McLaughlin JF, Aguilar C, Bernstein JM, Navia-Gine WG, Cueto-Aparicio LE, Alarcon AC, Alarcon BD, Collier R, Takyar A, Vong SJ, López-Chong OG, Driver R, Loaiza JR, De León LF, Saltonstall K, Lipshutz SE, Arcila D, Brock KM, Miller MJ. PMID: 36993716; PMCID: PMC10055050.
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Phylogenomics of Bony-Tongue Fishes (Osteoglossomorpha) Shed Light on the Craniofacial Evolution and Biogeography of the Weakly Electric Clade (Mormyridae). Syst Biol. 2022 08 10; 71(5):1032-1044.
Peterson RD, Sullivan JP, Hopkins CD, Santaquiteria A, Dillman CB, Pirro S, Betancur-R R, Arcila D, Hughes LC, Ortí G. PMID: 35041001.
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The impact of paleoclimatic changes on body size evolution in marine fishes. Proc Natl Acad Sci U S A. 2022 07 19; 119(29):e2122486119.
Troyer EM, Betancur-R R, Hughes LC, Westneat M, Carnevale G, White WT, Pogonoski JJ, Tyler JC, Baldwin CC, Ortí G, Brinkworth A, Clavel J, Arcila D. PMID: 35858316; PMCID: PMC9308125.
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4 Fields:
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Molecular and morphological evidence revalidates Acrobrycontarijae (Characiformes, Characidae) and shows hidden diversity. Zookeys. 2022; 1091:99-117.
Briñoccoli YF, Bogan S, Arcila D, Rosso JJ, Mabragaña E, Delpiani SM, de Astarloa JMD, Cardoso YP. PMID: 35586022; PMCID: PMC9005463.
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Testing the Utility of Alternative Metrics of Branch Support to Address the Ancient Evolutionary Radiation of Tunas, Stromateoids, and Allies (Teleostei: Pelagiaria). Syst Biol. 2021 10 13; 70(6):1123-1144.
Arcila D, Hughes LC, Meléndez-Vazquez B, Baldwin CC, White WT, Carpenter KE, Williams JT, Santos MD, Pogonoski JJ, Miya M, Ortí G, Betancur-R R. PMID: 33783539.
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5 Fields:
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Phylogenomics and Historical Biogeography of Seahorses, Dragonets, Goatfishes, and Allies (Teleostei: Syngnatharia): Assessing Factors Driving Uncertainty in Biogeographic Inferences. Syst Biol. 2021 10 13; 70(6):1145-1162.
Santaquiteria A, Siqueira AC, Duarte-Ribeiro E, Carnevale G, White WT, Pogonoski JJ, Baldwin CC, Ortí G, Arcila D, Ricardo BR. PMID: 33892493.
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7 Fields:
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Exon-capture data and locus screening provide new insights into the phylogeny of flatfishes (Pleuronectoidei). Mol Phylogenet Evol. 2022 01; 166:107315.
Atta CJ, Yuan H, Li C, Arcila D, Betancur-R R, Hughes LC, Ortí G, Tornabene L. PMID: 34537325.
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2 Fields:
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Evolutionary determinism and convergence associated with water-column transitions in marine fishes. Proc Natl Acad Sci U S A. 2020 12 29; 117(52):33396-33403.
Rincon-Sandoval M, Duarte-Ribeiro E, Davis AM, Santaquiteria A, Hughes LC, Baldwin CC, Soto-Torres L, Acero P A, Walker HJ, Carpenter KE, Sheaves M, Ortí G, Arcila D, Betancur-R R. PMID: 33328271; PMCID: PMC7777220.
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6 Fields:
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Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics. Mol Ecol Resour. 2021 Apr; 21(3):816-833.
Hughes LC, Ortí G, Saad H, Li C, White WT, Baldwin CC, Crandall KA, Arcila D, Betancur-R R. PMID: 33084200.
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5 Fields:
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Life history, distribution and molecular phylogenetics of the Upward-Mouth Spikefish Atrophacanthus japonicus (Teleostei: Tetraodontiformes: Triacanthodidae). J Fish Biol. 2019 Apr; 94(4):578-584.
Bemis KE, Tyler JC, Arcila D. PMID: 30734929.
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Phylogenomic incongruence, hypothesis testing, and taxonomic sampling: The monophyly of characiform fishes. Evolution. 2019 02; 73(2):329-345.
Betancur-R R, Arcila D, Vari RP, Hughes LC, Oliveira C, Sabaj MH, Ortí G. PMID: 30426469.
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18 Fields:
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Comprehensive phylogeny of ray-finned fishes (Actinopterygii) based on transcriptomic and genomic data. Proc Natl Acad Sci U S A. 2018 06 12; 115(24):6249-6254.
Hughes LC, Ortí G, Huang Y, Sun Y, Baldwin CC, Thompson AW, Arcila D, Betancur-R R, Li C, Becker L, Bellora N, Zhao X, Li X, Wang M, Fang C, Xie B, Zhou Z, Huang H, Chen S, Venkatesh B, Shi Q. PMID: 29760103; PMCID: PMC6004478.
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180 Fields:
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Mass extinction in tetraodontiform fishes linked to the Palaeocene-Eocene thermal maximum. Proc Biol Sci. 2017 Nov 15; 284(1866).
Arcila D, Tyler JC. PMID: 29118135; PMCID: PMC5698648.
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10 Fields:
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Trophic evolution in African citharinoid fishes (Teleostei: Characiformes) and the origin of intraordinal pterygophagy. Mol Phylogenet Evol. 2017 08; 113:23-32.
Lavoué S, Arnegard ME, Rabosky DL, McIntyre PB, Arcila D, Vari RP, Nishida M. PMID: 28478196.
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Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life. Nat Ecol Evol. 2017 Jan 13; 1(2):20.
Arcila D, Ortí G, Vari R, Armbruster JW, Stiassny MLJ, Ko KD, Sabaj MH, Lundberg J, Revell LJ, Betancur-R R. PMID: 28812610.
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Erratum to: Molecular phylogeny of the subfamily Stevardiinae Gill, 1858 (Characiformes: Characidae): classification and the evolution of reproductive traits. BMC Evol Biol. 2015 Dec 03; 15:269.
Thomaz AT, Arcila D, Ortí G, Malabarba LR. PMID: 26634700; PMCID: PMC4669599.
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Molecular phylogeny of the subfamily Stevardiinae Gill, 1858 (Characiformes: Characidae): classification and the evolution of reproductive traits. BMC Evol Biol. 2015 Jul 21; 15:146.
Thomaz AT, Arcila D, Ortí G, Malabarba LR. PMID: 26195030; PMCID: PMC4509481.
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10 Fields:
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Animals
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An evaluation of fossil tip-dating versus node-age calibrations in tetraodontiform fishes (Teleostei: Percomorphaceae). Mol Phylogenet Evol. 2015 Jan; 82 Pt A:131-45.
Arcila D, Alexander Pyron R, Tyler JC, Ortí G, Betancur-R R. PMID: 25462998.
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35 Fields:
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The tree of life and a new classification of bony fishes. PLoS Curr. 2013 Apr 18; 5.
Betancur-R R, Broughton RE, Wiley EO, Carpenter K, López JA, Li C, Holcroft NI, Arcila D, Sanciangco M, Cureton Ii JC, Zhang F, Buser T, Campbell MA, Ballesteros JA, Roa-Varon A, Willis S, Borden WC, Rowley T, Reneau PC, Hough DJ, Lu G, Grande T, Arratia G, Ortí G. PMID: 23653398; PMCID: PMC3644299.
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