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    Zhenjiang Xu

    TitleAssistant Project Scientist
    SchoolUniversity of California, San Diego
    Address9500 Gilman Drive #0763
    CA La Jolla 92093
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Metcalf JL, Xu Z, Bouslimani A, Dorrestein P, Carter DO, Knight R. Microbiome Tools for Forensic Science. Trends Biotechnol. 2017 Sep; 35(9):814-823. PMID: 28366290.
        View in: PubMed
      2. Weiss S, Xu Z, Peddada S, Amir A, Bittinger K, Gonzalez A, Lozupone C, Zaneveld JR, Vázquez-Baeza Y, Birmingham A, Hyde ER, Knight R. Normalization and microbial differential abundance strategies depend upon data characteristics. Microbiome. 2017 Mar 03; 5(1):27. PMID: 28253908.
        View in: PubMed
      3. Debelius J, Song SJ, Vazquez-Baeza Y, Xu Z, Gonzalez A, Knight R. Tiny microbes, enormous impacts: what matters in gut microbiome studies? Genome Biol. 2016 Oct 19; 17(1):217. PMID: 27760558.
        View in: PubMed
      4. Gilbert JA, Quinn RA, Debelius J, Xu Z, Morton J, Garg N, Jansson JK, Dorrestein PC, Knight R. Microbiome-wide association studies link dynamic microbial consortia to disease. Nature. 2016 07 07; 535(7610):94-103. PMID: 27383984.
        View in: PubMed
      5. Song SJ, Amir A, Metcalf JL, Amato KR, Xu Z, Humphrey G, Knight R. Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies. mSystems. 2016 May-Jun; 1(3). PMID: 27822526.
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      6. Weiss S, Van Treuren W, Lozupone C, Faust K, Friedman J, Deng Y, Xia LC, Xu Z, Ursell L, Alm EJ, Birmingham A, Cram JA, Fuhrman JA, Raes J, Sun F, Zhou J, Knight R. Correlation detection strategies in microbial data sets vary widely in sensitivity and precision. ISME J. 2016 Jul; 10(7):1669-81. PMID: 26905627; PMCID: PMC4918442 [Available on 07/01/17].
      7. Kopylova E, Navas-Molina JA, Mercier C, Xu Z, Mahé F, He Y, Zhou HW, Rognes T, Caporaso JG, Knight R. Open-Source Sequence Clustering Methods Improve the State Of the Art. mSystems. 2016 Jan-Feb; 1(1). PMID: 27822515.
        View in: PubMed
      8. Xu Z, Mathews DH. Secondary Structure Prediction of Single Sequences Using RNAstructure. Methods Mol Biol. 2016; 1490:15-34. PMID: 27665590.
        View in: PubMed
      9. Xu Z, Mathews DH. Prediction of Secondary Structures Conserved in Multiple RNA Sequences. Methods Mol Biol. 2016; 1490:35-50. PMID: 27665591.
        View in: PubMed
      10. Xu Z, Mathews DH. Experiment-Assisted Secondary Structure Prediction with RNAstructure. Methods Mol Biol. 2016; 1490:163-76. PMID: 27665598.
        View in: PubMed
      11. Metcalf JL, Xu Z, Weiss S, Lax S, Van Treuren W, Hyde ER, Song SJ, Amir A, Larsen P, Sangwan N, Haarmann D, Humphrey GC, Ackermann G, Thompson LR, Lauber C, Bibat A, Nicholas C, Gebert MJ, Petrosino JF, Reed SC, Gilbert JA, Lynne AM, Bucheli SR, Carter DO, Knight R. Microbial community assembly and metabolic function during mammalian corpse decomposition. Science. 2016 Jan 08; 351(6269):158-62. PMID: 26657285.
        View in: PubMed
      12. Teng F, Yang F, Huang S, Bo C, Xu Z, Amir A, Knight R, Ling J, Xu J. Prediction of Early Childhood Caries via Spatial-Temporal Variations of Oral Microbiota. Cell Host Microbe. 2015 Sep 09; 18(3):296-306. PMID: 26355216.
        View in: PubMed
      13. Fu Y, Xu Z, Lu ZJ, Zhao S, Mathews DH. Discovery of Novel ncRNA Sequences in Multiple Genome Alignments on the Basis of Conserved and Stable Secondary Structures. PLoS One. 2015; 10(6):e0130200. PMID: 26075601; PMCID: PMC4468099.
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