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Zachary King

TitleAssistant Project Scientist
InstitutionUniversity of California San Diego
DepartmentBioengineering
Address9500 Gilman Drive #0419
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Yang L, Yurkovich JT, King Z, Palsson BO. Modeling the multi-scale mechanisms of macromolecular resource allocation. Curr Opin Microbiol. 2018 Jan 20; 45:8-15. PMID: 29367175.
      View in: PubMed
    2. Monk JM, Lloyd CJ, Brunk E, Mih N, Sastry A, King Z, Takeuchi R, Nomura W, Zhang Z, Mori H, Feist AM, Palsson BO. iML1515, a knowledgebase that computes Escherichia coli traits. Nat Biotechnol. 2017 Oct 11; 35(10):904-908. PMID: 29020004.
      View in: PubMed
    3. Yurkovich JT, Yurkovich BJ, Dräger A, Palsson BO, King Z. A Padawan Programmer's Guide to Developing Software Libraries. Cell Syst. 2017 Nov 22; 5(5):431-437. PMID: 28988801.
      View in: PubMed
    4. King Z, O'Brien EJ, Feist AM, Palsson BO. Literature mining supports a next-generation modeling approach to predict cellular byproduct secretion. Metab Eng. 2017 01; 39:220-227. PMID: 27986597.
      View in: PubMed
    5. Hefzi H, Ang KS, Hanscho M, Bordbar A, Ruckerbauer D, Lakshmanan M, Orellana CA, Baycin-Hizal D, Huang Y, Ley D, Martinez VS, Kyriakopoulos S, Jiménez NE, Zielinski DC, Quek LE, Wulff T, Arnsdorf J, Li S, Lee JS, Paglia G, Loira N, Spahn PN, Pedersen LE, Gutierrez JM, King Z, Lund AM, Nagarajan H, Thomas A, Abdel-Haleem AM, Zanghellini J, Kildegaard HF, Voldborg BG, Gerdtzen ZP, Betenbaugh MJ, Palsson BO, Andersen MR, Nielsen LK, Borth N, Lee DY, Lewis NE. A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism. Cell Syst. 2016 Nov 23; 3(5):434-443.e8. PMID: 27883890.
      View in: PubMed
    6. King Z, Lu J, Dräger A, Miller P, Federowicz S, Lerman JA, Ebrahim A, Palsson BO, Lewis NE. BiGG Models: A platform for integrating, standardizing and sharing genome-scale models. Nucleic Acids Res. 2016 Jan 04; 44(D1):D515-22. PMID: 26476456; PMCID: PMC4702785.
    7. King Z, Dräger A, Ebrahim A, Sonnenschein N, Lewis NE, Palsson BO. Escher: A Web Application for Building, Sharing, and Embedding Data-Rich Visualizations of Biological Pathways. PLoS Comput Biol. 2015 Aug; 11(8):e1004321. PMID: 26313928; PMCID: PMC4552468.
    8. King Z, Lloyd CJ, Feist AM, Palsson BO. Next-generation genome-scale models for metabolic engineering. Curr Opin Biotechnol. 2015 Dec; 35:23-9. PMID: 25575024.
      View in: PubMed
    9. King Z, Feist AM. Optimal cofactor swapping can increase the theoretical yield for chemical production in Escherichia coli and Saccharomyces cerevisiae. Metab Eng. 2014 Jul; 24:117-28. PMID: 24831709.
      View in: PubMed
    10. Bordbar A, Monk JM, King Z, Palsson BO. Constraint-based models predict metabolic and associated cellular functions. Nat Rev Genet. 2014 Feb; 15(2):107-20. PMID: 24430943.
      View in: PubMed
    11. McCloskey D, Gangoiti JA, King Z, Naviaux RK, Barshop BA, Palsson BO, Feist AM. A model-driven quantitative metabolomics analysis of aerobic and anaerobic metabolism in E. coli K-12 MG1655 that is biochemically and thermodynamically consistent. Biotechnol Bioeng. 2014 Apr; 111(4):803-15. PMID: 24249002.
      View in: PubMed
    12. King Z, Shaw CM, Spanninga SA, Martin DC. Structural, chemical and electrochemical characterization of poly(3,4-ethylenedioxythiophene) (PEDOT) prepared with various counter-ions and heat treatments. Polymer (Guildf). 2011 Mar 01; 52(5):1302-1308. PMID: 21394224.
      View in: PubMed
    13. Venkatraman S, Hendricks J, King Z, Sereno AJ, Richardson-Burns S, Martin D, Carmena JM. In vitro and in vivo evaluation of PEDOT microelectrodes for neural stimulation and recording. IEEE Trans Neural Syst Rehabil Eng. 2011 Jun; 19(3):307-16. PMID: 21292598.
      View in: PubMed
    14. Stephens E, Ross IL, King Z, Mussgnug JH, Kruse O, Posten C, Borowitzka MA, Hankamer B. An economic and technical evaluation of microalgal biofuels. Nat Biotechnol. 2010 Feb; 28(2):126-8. PMID: 20139944.
      View in: PubMed
    15. Morris JA, Jordan CL, King Z, Northcutt KV, Breedlove SM. Sexual dimorphism and steroid responsiveness of the posterodorsal medial amygdala in adult mice. Brain Res. 2008 Jan 23; 1190:115-21. PMID: 18054901; PMCID: PMC2258085.