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    Xiaoqian Jiang

    TitleAssociate Professor
    SchoolUniversity of California, San Diego
    Address9500 Gilman Drive #0728
    CA La Jolla 92093
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      Collapse Research 
      Collapse Research Activities and Funding
      CALIFORNIA: Cloud-agnostic Architecture to Locate Indexed FAIR Objects and safely Reuse them in New Integrated Analyses
      NIH OT3OD025462Sep 30, 2017 - Jun 30, 2018
      Role: Co-Principal Investigator
      Open Health Natural Language Processing Collaboratory
      NIH/NCATS U01TR002062Sep 1, 2017 - Aug 31, 2022
      Role: Co-Principal Investigator
      Decentralized differentially-private methods for dynamic data release and analysis
      NIH/NIGMS R01GM118609Jan 1, 2017 - Dec 31, 2020
      Role: Principal Investigator
      SERGEANT: SEcuRe GEnome Analysis competition
      NIH/NHGRI R13HG009072Sep 12, 2016 - Jun 30, 2018
      Role: Principal Investigator
      iCONCUR: informed CONsent for Clinical data and biosample Use for Research
      NIH/NHGRI R01HG008802Sep 21, 2015 - Jun 30, 2018
      Role: Principal Investigator
      Protect Privacy of Healthcare Data in the Cloud
      NIH/NLM R21LM012060Sep 15, 2014 - Aug 31, 2016
      Role: Principal Investigator
      Protection of Records: Privacy (PReP) Technology for Medical Research
      NIH/NLM R00LM011392Sep 1, 2012 - Aug 31, 2016
      Role: Principal Investigator
      Protection of Records: Privacy (PReP) Technology for Medical Research
      NIH/NLM K99LM011392Sep 1, 2012 - Aug 31, 2013
      Role: Principal Investigator

      Collapse Bibliographic 
      Collapse Publications
      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Chen F, Wang C, Dai W, Jiang X, Mohammed N, Al Aziz MM, Sadat MN, Sahinalp C, Lauter K, Wang S. PRESAGE: PRivacy-preserving gEnetic testing via SoftwAre Guard Extension. BMC Med Genomics. 2017 Jul 26; 10(Suppl 2):48. PMID: 28786365.
        View in: PubMed
      2. Zhu Y, Lin Y, Yan W, Sun Z, Jiang Z, Shen B, Jiang X, Shi J. Novel Biomarker MicroRNAs for Subtyping of Acute Coronary Syndrome: A Bioinformatics Approach. Biomed Res Int. 2016; 2016:4618323. PMID: 28044128.
        View in: PubMed
      3. Farhan W, Wang Z, Huang Y, Wang S, Wang F, Jiang X. A Predictive Model for Medical Events Based on Contextual Embedding of Temporal Sequences. JMIR Med Inform. 2016 Nov 25; 4(4):e39. PMID: 27888170.
        View in: PubMed
      4. Wang S, Jiang X, Singh S, Marmor R, Bonomi L, Fox D, Dow M, Ohno-Machado L. Genome privacy: challenges, technical approaches to mitigate risk, and ethical considerations in the United States. Ann N Y Acad Sci. 2017 Jan; 1387(1):73-83. PMID: 27681358.
        View in: PubMed
      5. Huh J, Marmor R, Jiang X. Lessons Learned for Online Health Community Moderator Roles: A Mixed-Methods Study of Moderators Resigning From WebMD Communities. J Med Internet Res. 2016 Sep 08; 18(9):e247. PMID: 27608721.
        View in: PubMed
      6. Shi H, Jiang C, Dai W, Jiang X, Tang Y, Ohno-Machado L, Wang S. Secure Multi-pArty Computation Grid LOgistic REgression (SMAC-GLORE). BMC Med Inform Decis Mak. 2016 Jul 25; 16 Suppl 3:89. PMID: 27454168; PMCID: PMC4959358.
      7. Dulai PS, Singh S, Jiang X, Peerani F, Narula N, Chaudrey K, Whitehead D, Hudesman D, Lukin D, Swaminath A, Shmidt E, Wang S, Boland BS, Chang JT, Kane S, Siegel CA, Loftus EV, Sandborn WJ, Sands BE, Colombel JF. The Real-World Effectiveness and Safety of Vedolizumab for Moderate-Severe Crohn's Disease: Results From the US VICTORY Consortium. Am J Gastroenterol. 2016 Aug; 111(8):1147-55. PMID: 27296941.
        View in: PubMed
      8. Han D, Wang S, Jiang C, Jiang X, Kim HE, Sun J, Ohno-Machado L. Trends in biomedical informatics: automated topic analysis of JAMIA articles. J Am Med Inform Assoc. 2015 Nov; 22(6):1153-63. PMID: 26555018; PMCID: PMC5009912 [Available on 11/01/16].
      9. Wang S, Zhang Y, Dai W, Lauter K, Kim M, Tang Y, Xiong H, Jiang X. HEALER: homomorphic computation of ExAct Logistic rEgRession for secure rare disease variants analysis in GWAS. Bioinformatics. 2016 Jan 15; 32(2):211-8. PMID: 26446135; PMCID: PMC4739182 [Available on 01/15/17].
      10. Lu CL, Wang S, Ji Z, Wu Y, Xiong L, Jiang X, Ohno-Machado L. WebDISCO: a web service for distributed cox model learning without patient-level data sharing. J Am Med Inform Assoc. 2015 Nov; 22(6):1212-9. PMID: 26159465; PMCID: PMC5009917 [Available on 11/01/16].
      11. Wei W, Demner-Fushman D, Wang S, Jiang X, Ohno-Machado L. Ranking Medical Subject Headings using a factor graph model. AMIA Jt Summits Transl Sci Proc. 2015; 2015:56-63. PMID: 26306236; PMCID: PMC4525219.
      12. Jiang X, Wu Y, Marsolo K, Ohno-Machado L. Development of a web service for analysis in a distributed network. EGEMS (Wash DC). 2014; 2(1):1053. PMID: 25848586; PMCID: PMC4371401.
      13. Wang S, Jiang X, Chen F, Cui L, Cheng S. Streamlined Genome Sequence Compression using Distributed Source Coding. Cancer Inform. 2014; 13(Suppl 1):123-31. PMID: 25520552; PMCID: PMC4256044.
      14. Kim H, Ohno-Machado L, Oh J, Jiang X. Trends in publication of nursing informatics research. AMIA Annu Symp Proc. 2014; 2014:805-14. PMID: 25954387; PMCID: PMC4419947.
      15. Jiang X, Chen R, Cheng S, Jiang X, Shen B, Xu R, Yi S. Computational advances in cancer informatics (a). Cancer Inform. 2014; 13(Suppl 1):45-8. PMID: 25484572; PMCID: PMC4216040.
      16. Karimi S, Jiang X, Cosman P, Martz H. Flexible methods for segmentation evaluation: results from CT-based luggage screening. J Xray Sci Technol. 2014; 22(2):175-95. PMID: 24699346.
        View in: PubMed
      17. Kim H, Chung H, Wang S, Jiang X, Choi J. SAPPIRE: a prototype mobile tool for pressure ulcer risk assessment. Stud Health Technol Inform. 2014; 201:433-40. PMID: 24943578; PMCID: PMC4414243.
      18. Li P, Wang S, Kim J, Xiong H, Ohno-Machado L, Jiang X. DNA-COMPACT: DNA COMpression based on a pattern-aware contextual modeling technique. PLoS One. 2013; 8(11):e80377. PMID: 24282536; PMCID: PMC3840021.
      19. Wang S, Jiang X, Ji Z, El-Kareh R, Choi J, Kim H. When you can't tell when it hurts: a preliminary algorithm to assess pain in patients who can't communicate. AMIA Annu Symp Proc. 2013; 2013:1429-37. PMID: 24551418; PMCID: PMC3900156.
      20. Jiang X, Tse K, Wang S, Doan S, Kim H, Ohno-Machado L. Recent trends in biomedical informatics: a study based on JAMIA articles. J Am Med Inform Assoc. 2013 Dec; 20(e2):e198-205. PMID: 24214018; PMCID: PMC3861936.
      21. Jiang W, Li P, Wang S, Wu Y, Xue M, Ohno-Machado L, Jiang X. WebGLORE: a web service for Grid LOgistic REgression. Bioinformatics. 2013 Dec 15; 29(24):3238-40. PMID: 24072732; PMCID: PMC3842761.
      22. Doan S, Lin KW, Conway M, Ohno-Machado L, Hsieh A, Feupe SF, Garland A, Ross MK, Jiang X, Farzaneh S, Walker R, Alipanah N, Zhang J, Xu H, Kim HE. PhenDisco: phenotype discovery system for the database of genotypes and phenotypes. J Am Med Inform Assoc. 2014 Jan-Feb; 21(1):31-6. PMID: 23989082; PMCID: PMC3912702.
      23. Jiang X, Sarwate AD, Ohno-Machado L. Privacy technology to support data sharing for comparative effectiveness research: a systematic review. Med Care. 2013 Aug; 51(8 Suppl 3):S58-65. PMID: 23774511; PMCID: PMC3728160.
      24. Wang S, Jiang X, Wu Y, Cui L, Cheng S, Ohno-Machado L. EXpectation Propagation LOgistic REgRession (EXPLORER): distributed privacy-preserving online model learning. J Biomed Inform. 2013 Jun; 46(3):480-96. PMID: 23562651; PMCID: PMC3676314.
      25. Ohno-Machado L, Farcas C, Kim J, Wang S, Jiang X. Genomes in the cloud: balancing privacy rights and the public good. AMIA Jt Summits Transl Sci Proc. 2013; 2013:128. PMID: 24303320.
        View in: PubMed
      26. Jiang X, Menon A, Wang S, Kim J, Ohno-Machado L. Doubly Optimized Calibrated Support Vector Machine (DOC-SVM): an algorithm for joint optimization of discrimination and calibration. PLoS One. 2012; 7(11):e48823. PMID: 23139819; PMCID: PMC3490990.
      27. Jiang X, Kim J, Wu Y, Wang S, Ohno-Machado L. Selecting cases for whom additional tests can improve prognostication. AMIA Annu Symp Proc. 2012; 2012:1260-8. PMID: 23304404; PMCID: PMC3540468.
      28. Wu Y, Jiang X, Ohno-Machado L. Preserving Institutional Privacy in Distributed binary Logistic Regression. AMIA Annu Symp Proc. 2012; 2012:1450-8. PMID: 23304425; PMCID: PMC3540539.
      29. Wang S, Cui L, Que J, Choi DH, Jiang X, Cheng S, Xie L. A Randomized Response Model For Privacy Preserving Smart Metering. IEEE Trans Smart Grid. 2012 Sep; 3(2):1317-1324. PMID: 23243488.
        View in: PubMed
      30. Wu Y, Jiang X, Kim J, Ohno-Machado L. Grid Binary LOgistic REgression (GLORE): building shared models without sharing data. J Am Med Inform Assoc. 2012 Sep-Oct; 19(5):758-64. PMID: 22511014; PMCID: PMC3422844.
      31. Jiang X, Boxwala AA, El-Kareh R, Kim J, Ohno-Machado L. A patient-driven adaptive prediction technique to improve personalized risk estimation for clinical decision support. J Am Med Inform Assoc. 2012 Jun; 19(e1):e137-44. PMID: 22493049; PMCID: PMC3392846.
      32. Wu Y, Jiang X, Kim J, Ohno-Machado L. I-spline Smoothing for Calibrating Predictive Models. AMIA Jt Summits Transl Sci Proc. 2012; 2012:39-46. PMID: 22779048; PMCID: PMC3392066.
      33. Menon AK, Jiang X, Vembu S, Elkan C, Ohno-Machado L. Predicting accurate probabilities with a ranking loss. Proc Int Conf Mach Learn. 2012; 2012:703-710. PMID: 25285328.
        View in: PubMed
      34. Kim HE, Jiang X, Kim J, Ohno-Machado L. Trends in biomedical informatics: most cited topics from recent years. J Am Med Inform Assoc. 2011 Dec; 18 Suppl 1:i166-70. PMID: 22180873; PMCID: PMC3241182.
      35. Ohno-Machado L, Bafna V, Boxwala AA, Chapman BE, Chapman WW, Chaudhuri K, Day ME, Farcas C, Heintzman ND, Jiang X, Kim H, Kim J, Matheny ME, Resnic FS, Vinterbo SA. iDASH: integrating data for analysis, anonymization, and sharing. J Am Med Inform Assoc. 2012 Mar-Apr; 19(2):196-201. PMID: 22081224; PMCID: PMC3277627.
      36. Jiang X, El-Kareh R, Ohno-Machado L. Improving predictions in imbalanced data using Pairwise Expanded Logistic Regression. AMIA Annu Symp Proc. 2011; 2011:625-34. PMID: 22195118; PMCID: PMC3243279.
      37. Kim J, Grillo JM, Boxwala AA, Jiang X, Mandelbaum RB, Patel BA, Mikels D, Vinterbo SA, Ohno-Machado L. Anomaly and signature filtering improve classifier performance for detection of suspicious access to EHRs. AMIA Annu Symp Proc. 2011; 2011:723-31. PMID: 22195129; PMCID: PMC3243249.
      38. Jiang X, Osl M, Kim J, Ohno-Machado L. Calibrating predictive model estimates to support personalized medicine. J Am Med Inform Assoc. 2012 Mar-Apr; 19(2):263-74. PMID: 21984587; PMCID: PMC3277613.
      39. Jiang X, Osl M, Kim J, Ohno-Machado L. Smooth isotonic regression: a new method to calibrate predictive models. AMIA Jt Summits Transl Sci Proc. 2011; 2011:16-20. PMID: 22211175; PMCID: PMC3248752.
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