Wout Bittremieux

Title(s)Postdoctoral Scholar, School of Pharmacy and Pharmaceutical Science
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #0751
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra. PLoS One. 2020; 15(1):e0226770. Liu Y, Mrzic A, Meysman P, De Vijlder T, Romijn EP, Valkenborg D, Bittremieux W, Laukens K. PMID: 31945070.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    2. Identification of Epitope-Specific T Cells in T-Cell Receptor Repertoires. Methods Mol Biol. 2020; 2120:183-195. Gielis S, Moris P, Bittremieux W, De Neuter N, Ogunjimi B, Laukens K, Meysman P. PMID: 32124320.
      View in: PubMed   Mentions:    Fields:    
    3. spectrum_utils: A Python Package for Mass Spectrometry Data Processing and Visualization. Anal Chem. 2020 01 07; 92(1):659-661. Bittremieux W. PMID: 31809021.
      View in: PubMed   Mentions:    Fields:    
    4. Detection of Enriched T Cell Epitope Specificity in Full T Cell Receptor Sequence Repertoires. Front Immunol. 2019; 10:2820. Gielis S, Moris P, Bittremieux W, De Neuter N, Ogunjimi B, Laukens K, Meysman P. PMID: 31849987.
      View in: PubMed   Mentions: 4     Fields:    
    5. 2018 YPIC Challenge: A Case Study in Characterizing an Unknown Protein Sample. J Proteome Res. 2019 11 01; 18(11):3936-3943. Pino L, Lin A, Bittremieux W. PMID: 31556620.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    6. Extremely Fast and Accurate Open Modification Spectral Library Searching of High-Resolution Mass Spectra Using Feature Hashing and Graphics Processing Units. J Proteome Res. 2019 10 04; 18(10):3792-3799. Bittremieux W, Laukens K, Noble WS. PMID: 31448616.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    7. Proceedings of the EuBIC Winter School 2019. EuPA Open Proteom. 2019 Mar; 22-23:4-7. Kopczynski D, Bittremieux W, Bouyssié D, Dorfer V, Locard-Paulet M, Van Puyvelde B, Schwämmle V, Soggiu A, Willems S, Uszkoreit J. PMID: 31890545.
      View in: PubMed   Mentions:
    8. Using Expert Driven Machine Learning to Enhance Dynamic Metabolomics Data Analysis. Metabolites. 2019 Mar 20; 9(3). Beirnaert C, Peeters L, Meysman P, Bittremieux W, Foubert K, Custers D, Van der Auwera A, Cuykx M, Pieters L, Covaci A, Laukens K. PMID: 30897797.
      View in: PubMed   Mentions:
    9. Fast Open Modification Spectral Library Searching through Approximate Nearest Neighbor Indexing. J Proteome Res. 2018 10 05; 17(10):3463-3474. Bittremieux W, Meysman P, Noble WS, Laukens K. PMID: 30184435.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    10. Grasping frequent subgraph mining for bioinformatics applications. BioData Min. 2018; 11:20. Mrzic A, Meysman P, Bittremieux W, Moris P, Cule B, Goethals B, Laukens K. PMID: 30202444.
      View in: PubMed   Mentions:
    11. Proceedings of the EuBIC developer's meeting 2018. J Proteomics. 2018 09 15; 187:25-27. Willems S, Bouyssié D, Deforce D, Dorfer V, Gorshkov V, Kopczynski D, Laukens K, Locard-Paulet M, Schwämmle V, Uszkoreit J, Valkenborg D, Vaudel M, Bittremieux W. PMID: 29864591.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    12. Proteomics Standards Initiative: Fifteen Years of Progress and Future Work. J Proteome Res. 2017 12 01; 16(12):4288-4298. Deutsch EW, Orchard S, Binz PA, Bittremieux W, Eisenacher M, Hermjakob H, Kawano S, Lam H, Mayer G, Menschaert G, Perez-Riverol Y, Salek RM, Tabb DL, Tenzer S, Vizcaíno JA, Walzer M, Jones AR. PMID: 28849660.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    13. Quality control in mass spectrometry-based proteomics. Mass Spectrom Rev. 2018 09; 37(5):697-711. Bittremieux W, Tabb DL, Impens F, Staes A, Timmerman E, Martens L, Laukens K. PMID: 28802010.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    14. On the feasibility of mining CD8+ T cell receptor patterns underlying immunogenic peptide recognition. Immunogenetics. 2018 03; 70(3):159-168. De Neuter N, Bittremieux W, Beirnaert C, Cuypers B, Mrzic A, Moris P, Suls A, Van Tendeloo V, Ogunjimi B, Laukens K, Meysman P. PMID: 28779185.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    15. A community proposal to integrate proteomics activities in ELIXIR. F1000Res. 2017; 6. Vizcaíno JA, Walzer M, Jiménez RC, Bittremieux W, Bouyssié D, Carapito C, Corrales F, Ferro M, Heck AJR, Horvatovich P, Hubalek M, Lane L, Laukens K, Levander F, Lisacek F, Novak P, Palmblad M, Piovesan D, Pühler A, Schwämmle V, Valkenborg D, van Rijswijk M, Vondrasek J, Eisenacher M, Martens L, Kohlbacher O. PMID: 28713550.
      View in: PubMed   Mentions: 4     Fields:    
    16. The Human Proteome Organization-Proteomics Standards Initiative Quality Control Working Group: Making Quality Control More Accessible for Biological Mass Spectrometry. Anal Chem. 2017 04 18; 89(8):4474-4479. Bittremieux W, Walzer M, Tenzer S, Zhu W, Salek RM, Eisenacher M, Tabb DL. PMID: 28318237.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    17. Computational quality control tools for mass spectrometry proteomics. Proteomics. 2017 02; 17(3-4). Bittremieux W, Valkenborg D, Martens L, Laukens K. PMID: 27549080.
      View in: PubMed   Mentions: 7     Fields:    
    18. Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph. IEEE/ACM Trans Comput Biol Bioinform. 2019 Sep-Oct; 16(5):1496-1507. Meysman P, Saeys Y, Sabaghian E, Bittremieux W, Van de Peer Y, Goethals B, Laukens K. PMID: 27295680.
      View in: PubMed   Mentions:    Fields:    
    19. Designing biomedical proteomics experiments: state-of-the-art and future perspectives. Expert Rev Proteomics. 2016 05; 13(5):495-511. Maes E, Kelchtermans P, Bittremieux W, De Grave K, Degroeve S, Hooyberghs J, Mertens I, Baggerman G, Ramon J, Laukens K, Martens L, Valkenborg D. PMID: 27031651.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    20. Unsupervised Quality Assessment of Mass Spectrometry Proteomics Experiments by Multivariate Quality Control Metrics. J Proteome Res. 2016 Apr 01; 15(4):1300-7. Bittremieux W, Meysman P, Martens L, Valkenborg D, Laukens K. PMID: 26974716.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    21. iMonDB: Mass Spectrometry Quality Control through Instrument Monitoring. J Proteome Res. 2015 May 01; 14(5):2360-6. Bittremieux W, Willems H, Kelchtermans P, Martens L, Laukens K, Valkenborg D. PMID: 25798920.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    22. Efficient reduction of candidate matches in peptide spectrum library searching using the top k most intense peaks. J Proteome Res. 2014 Sep 05; 13(9):4175-83. Vu TN, Bittremieux W, Valkenborg D, Goethals B, Lemière F, Laukens K. PMID: 25004400.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    23. jqcML: an open-source java API for mass spectrometry quality control data in the qcML format. J Proteome Res. 2014 Jul 03; 13(7):3484-7. Bittremieux W, Kelchtermans P, Valkenborg D, Martens L, Laukens K. PMID: 24906114.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    24. qcML: an exchange format for quality control metrics from mass spectrometry experiments. Mol Cell Proteomics. 2014 Aug; 13(8):1905-13. Walzer M, Pernas LE, Nasso S, Bittremieux W, Nahnsen S, Kelchtermans P, Pichler P, van den Toorn HW, Staes A, Vandenbussche J, Mazanek M, Taus T, Scheltema RA, Kelstrup CD, Gatto L, van Breukelen B, Aiche S, Valkenborg D, Laukens K, Lilley KS, Olsen JV, Heck AJ, Mechtler K, Aebersold R, Gevaert K, Vizcaíno JA, Hermjakob H, Kohlbacher O, Martens L. PMID: 24760958.
      View in: PubMed   Mentions: 10     Fields:    
    25. Machine learning applications in proteomics research: how the past can boost the future. Proteomics. 2014 Mar; 14(4-5):353-66. Kelchtermans P, Bittremieux W, De Grave K, Degroeve S, Ramon J, Laukens K, Valkenborg D, Barsnes H, Martens L. PMID: 24323524.
      View in: PubMed   Mentions: 9     Fields:    
    26. A primer to frequent itemset mining for bioinformatics. Brief Bioinform. 2015 Mar; 16(2):216-31. Naulaerts S, Meysman P, Bittremieux W, Vu TN, Vanden Berghe W, Goethals B, Laukens K. PMID: 24162173.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimals
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