Vikash Gilja

Title(s)Associate Professor, Electrical and Computer Engineering
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    1. High-density transparent graphene arrays for predicting cellular calcium activity at depth from surface potential recordings. Nat Nanotechnol. 2024 Jan 11. Ramezani M, Kim JH, Liu X, Ren C, Alothman A, De-Eknamkul C, Wilson MN, Cubukcu E, Gilja V, Komiyama T, Kuzum D. PMID: 38212523.
      View in: PubMed   Mentions:    Fields:    
    2. High-performance neural population dynamics modeling enabled by scalable computational infrastructure. J Open Source Softw. 2023; 8(83). Patel AN, Sedler AR, Huang J, Pandarinath C, Gilja V. PMID: 37520691; PMCID: PMC10374446.
      View in: PubMed   Mentions:
    3. Spatiotemporal dynamics of human high gamma discriminate naturalistic behavioral states. PLoS Comput Biol. 2022 08; 18(8):e1010401. Alasfour A, Gabriel P, Jiang X, Shamie I, Melloni L, Thesen T, Dugan P, Friedman D, Doyle W, Devinsky O, Gonda D, Sattar S, Wang S, Halgren E, Gilja V. PMID: 35939509; PMCID: PMC9387937.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    4. High γ Activity in Cortex and Hippocampus Is Correlated with Autonomic Tone during Sleep. eNeuro. 2021 Nov-Dec; 8(6). Alasfour A, Jiang X, Gonzalez-Martinez J, Gilja V, Halgren E. PMID: 34732536; PMCID: PMC8607912.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    5. Affective response to volitional input perturbations in obstacle avoidance and target tracking games. Annu Int Conf IEEE Eng Med Biol Soc. 2021 11; 2021:6679-6682. Patel AN, Chau G, Chang C, Sun A, Huang J, Jung TP, Gilja V. PMID: 34892640.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    6. Unsupervised Channel Compression Methods in Motor Prostheses Design. Annu Int Conf IEEE Eng Med Biol Soc. 2021 11; 2021:6581-6585. Alothman A, Gilja V. PMID: 34892617.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    7. Local field potentials in a pre-motor region predict learned vocal sequences. PLoS Comput Biol. 2021 09; 17(9):e1008100. Brown DE, Chavez JI, Nguyen DH, Kadwory A, Voytek B, Arneodo EM, Gentner TQ, Gilja V. PMID: 34555020; PMCID: PMC8460039.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    8. Microscale Physiological Events on the Human Cortical Surface. Cereb Cortex. 2021 07 05; 31(8):3678-3700. Paulk AC, Yang JC, Cleary DR, Soper DJ, Halgren M, O'Donnell AR, Lee SH, Ganji M, Ro YG, Oh H, Hossain L, Lee J, Tchoe Y, Rogers N, Kiliç K, Ryu SB, Lee SW, Hermiz J, Gilja V, Ulbert I, Fabó D, Thesen T, Doyle WK, Devinsky O, Madsen JR, Schomer DL, Eskandar EN, Lee JW, Maus D, Devor A, Fried SI, Jones PS, Nahed BV, Ben-Haim S, Bick SK, Richardson RM, Raslan AM, Siler DA, Cahill DP, Williams ZM, Cosgrove GR, Dayeh SA, Cash SS. PMID: 33749727; PMCID: PMC8258438.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimalsCells
    9. Neurally driven synthesis of learned, complex vocalizations. Curr Biol. 2021 08 09; 31(15):3419-3425.e5. Arneodo EM, Chen S, Brown DE, Gilja V, Gentner TQ. PMID: 34139192; PMCID: PMC8375361.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    10. The Argo: a high channel count recording system for neural recording in vivo. J Neural Eng. 2021 02 24; 18(1):015002. Sahasrabuddhe K, Khan AA, Singh AP, Stern TM, Ng Y, Tadic A, Orel P, LaReau C, Pouzzner D, Nishimura K, Boergens KM, Shivakumar S, Hopper MS, Kerr B, Hanna MS, Edgington RJ, McNamara I, Fell D, Gao P, Babaie-Fishani A, Veijalainen S, Klekachev AV, Stuckey AM, Luyssaert B, Kozai TDY, Xie C, Gilja V, Dierickx B, Kong Y, Straka M, Sohal HS, Angle MR. PMID: 33624614; PMCID: PMC8607496.
      View in: PubMed   Mentions: 24     Fields:    Translation:AnimalsCells
    11. Impact of Brain Surface Boundary Conditions on Electrophysiology and Implications for Electrocorticography. Front Neurosci. 2020; 14:763. Rogers N, Thunemann M, Devor A, Gilja V. PMID: 32903652; PMCID: PMC7438758.
      View in: PubMed   Mentions: 2  
    12. Stimulus Driven Single Unit Activity From Micro-Electrocorticography. Front Neurosci. 2020; 14:55. Hermiz J, Hossain L, Arneodo EM, Ganji M, Rogers N, Vahidi N, Halgren E, Gentner TQ, Dayeh SA, Gilja V. PMID: 32180695; PMCID: PMC7059620.
      View in: PubMed   Mentions: 7  
    13. Neural correlates of unstructured motor behaviors. J Neural Eng. 2019 10 30; 16(6):066026. Gabriel PG, Chen KJ, Alasfour A, Pailla T, Doyle WK, Devinsky O, Friedman D, Dugan P, Melloni L, Thesen T, Gonda D, Sattar S, Wang SG, Gilja V. PMID: 31342926.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    14. Selective Formation of Porous Pt Nanorods for Highly Electrochemically Efficient Neural Electrode Interfaces. Nano Lett. 2019 09 11; 19(9):6244-6254. Ganji M, Paulk AC, Yang JC, Vahidi NW, Lee SH, Liu R, Hossain L, Arneodo EM, Thunemann M, Shigyo M, Tanaka A, Ryu SB, Lee SW, Tchoe Y, Marsala M, Devor A, Cleary DR, Martin JR, Oh H, Gilja V, Gentner TQ, Fried SI, Halgren E, Cash SS, Dayeh SA. PMID: 31369283; PMCID: PMC7174248.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    15. Correlation Structure in Micro-ECoG Recordings is Described by Spatially Coherent Components. PLoS Comput Biol. 2019 02; 15(2):e1006769. Rogers N, Hermiz J, Ganji M, Kaestner E, Kiliç K, Hossain L, Thunemann M, Cleary DR, Carter BS, Barba D, Devor A, Halgren E, Dayeh SA, Gilja V. PMID: 30742605; PMCID: PMC6386410.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansAnimals
    16. Use of Accelerometry for Long Term Monitoring of Stroke Patients. IEEE J Transl Eng Health Med. 2019; 7:2100310. Lucas A, Hermiz J, Labuzetta J, Arabadzhi Y, Karanjia N, Gilja V. PMID: 31475079; PMCID: PMC6588341.
      View in: PubMed   Mentions: 7     Fields:    
    17. Autoencoders for learning template spectrograms in electrocorticographic signals. J Neural Eng. 2019 02; 16(1):016025. Pailla T, Miller KJ, Gilja V. PMID: 30524070.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    18. Coarse behavioral context decoding. J Neural Eng. 2019 02; 16(1):016021. Alasfour A, Gabriel P, Jiang X, Shamie I, Melloni L, Thesen T, Dugan P, Friedman D, Doyle W, Devinsky O, Gonda D, Sattar S, Wang S, Halgren E, Gilja V. PMID: 30523860.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    19. Monolithic and Scalable Au Nanorod Substrates Improve PEDOT-Metal Adhesion and Stability in Neural Electrodes. Adv Healthc Mater. 2018 11; 7(22):e1800923. Ganji M, Hossain L, Tanaka A, Thunemann M, Halgren E, Gilja V, Devor A, Dayeh SA. PMID: 30369088; PMCID: PMC6387627.
      View in: PubMed   Mentions: 11     Fields:    Translation:AnimalsCells
    20. Patient-Specific Pose Estimation in Clinical Environments. IEEE J Transl Eng Health Med. 2018; 6:2101111. Chen K, Gabriel P, Alasfour A, Gong C, Doyle WK, Devinsky O, Friedman D, Dugan P, Melloni L, Thesen T, Gonda D, Sattar S, Wang S, Gilja V. PMID: 30483453; PMCID: PMC6255526.
      View in: PubMed   Mentions: 10     Fields:    
    21. Sub-millimeter ECoG pitch in human enables higher fidelity cognitive neural state estimation. Neuroimage. 2018 08 01; 176:454-464. Hermiz J, Rogers N, Kaestner E, Ganji M, Cleary DR, Carter BS, Barba D, Dayeh SA, Halgren E, Gilja V. PMID: 29678760.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    22. Cryptographic decoding of movement. Nat Biomed Eng. 2017 12; 1(12):929-930. Gilja V. PMID: 31015709.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    23. Stretchable Dry Electrodes with Concentric Ring Geometry for Enhancing Spatial Resolution in Electrophysiology. Adv Healthc Mater. 2017 Oct; 6(19). Wang K, Parekh U, Pailla T, Garudadri H, Gilja V, Ng TN. PMID: 28714587.
      View in: PubMed   Mentions: 9     Fields:    
    24. Graphene neural interfaces for artifact free optogenetics. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:4204-4207. Rogers N, Gilja V, Kuzum D. PMID: 28269210.
      View in: PubMed   Mentions:    Fields:    
    25. A clinic compatible, open source electrophysiology system. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:4511-4514. Hermiz J, Rogers N, Kaestner E, Ganji M, Cleary D, Snider J, Barba D, Dayeh S, Halgren E, Gilja V. PMID: 28325009.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    26. Decoding speech using the timing of neural signal modulation. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:1532-1535. Jiang W, Pailla T, Dichter B, Chang EF, Gilja V. PMID: 28268618.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    27. Hidden-Markov Factor analysis as a spatiotemporal model for electrocorticography. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:1632-1635. Omigbodun A, Doyle WK, Devinsky O, Friedman D, Thesen T, Gilja V. PMID: 28268642.
      View in: PubMed   Mentions:    Fields:    
    28. Neural correlates to automatic behavior estimations from RGB-D video in epilepsy unit. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:3402-3405. Gabriel P, Doyle WK, Devinsky O, Friedman D, Thesen T, Gilja V. PMID: 28269034.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    29. ECoG data analyses to inform closed-loop BCI experiments for speech-based prosthetic applications. Annu Int Conf IEEE Eng Med Biol Soc. 2016 Aug; 2016:5713-5716. Pailla T, Jiang W, Dichter B, Chang EF, Gilja V. PMID: 28269552.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    30. Virtual typing by people with tetraplegia using a self-calibrating intracortical brain-computer interface. Sci Transl Med. 2015 Nov 11; 7(313):313ra179. Jarosiewicz B, Sarma AA, Bacher D, Masse NY, Simeral JD, Sorice B, Oakley EM, Blabe C, Pandarinath C, Gilja V, Cash SS, Eskandar EN, Friehs G, Henderson JM, Shenoy KV, Donoghue JP, Hochberg LR. PMID: 26560357; PMCID: PMC4765319.
      View in: PubMed   Mentions: 94     Fields:    Translation:Humans
    31. Clinical translation of a high-performance neural prosthesis. Nat Med. 2015 Oct; 21(10):1142-5. Gilja V, Pandarinath C, Blabe CH, Nuyujukian P, Simeral JD, Sarma AA, Sorice BL, Perge JA, Jarosiewicz B, Hochberg LR, Shenoy KV, Henderson JM. PMID: 26413781; PMCID: PMC4805425.
      View in: PubMed   Mentions: 115     Fields:    Translation:Humans
    32. Assessment of brain-machine interfaces from the perspective of people with paralysis. J Neural Eng. 2015 Aug; 12(4):043002. Blabe CH, Gilja V, Chestek CA, Shenoy KV, Anderson KD, Henderson JM. PMID: 26169880; PMCID: PMC4761228.
      View in: PubMed   Mentions: 24     Fields:    Translation:Humans
    33. Neural population dynamics in human motor cortex during movements in people with ALS. Elife. 2015 Jun 23; 4:e07436. Pandarinath C, Gilja V, Blabe CH, Nuyujukian P, Sarma AA, Sorice BL, Eskandar EN, Hochberg LR, Henderson JM, Shenoy KV. PMID: 26099302; PMCID: PMC4475900.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCells
    34. Comparison of spike sorting and thresholding of voltage waveforms for intracortical brain-machine interface performance. J Neural Eng. 2015 Feb; 12(1):016009. Christie BP, Tat DM, Irwin ZT, Gilja V, Nuyujukian P, Foster JD, Ryu SI, Shenoy KV, Thompson DE, Chestek CA. PMID: 25504690; PMCID: PMC4332592.
      View in: PubMed   Mentions: 29     Fields:    Translation:AnimalsCells
    35. Self-recalibrating classifiers for intracortical brain-computer interfaces. J Neural Eng. 2014 Apr; 11(2):026001. Bishop W, Chestek CC, Gilja V, Nuyujukian P, Foster JD, Ryu SI, Shenoy KV, Yu BM. PMID: 24503597; PMCID: PMC4393645.
      View in: PubMed   Mentions: 18     Fields:    Translation:Animals
    36. Hand posture classification using electrocorticography signals in the gamma band over human sensorimotor brain areas. J Neural Eng. 2013 Apr; 10(2):026002. Chestek CA, Gilja V, Blabe CH, Foster BL, Shenoy KV, Parvizi J, Henderson JM. PMID: 23369953; PMCID: PMC3670711.
      View in: PubMed   Mentions: 48     Fields:    Translation:Humans
    37. A high-performance neural prosthesis enabled by control algorithm design. Nat Neurosci. 2012 Dec; 15(12):1752-7. Gilja V, Nuyujukian P, Chestek CA, Cunningham JP, Yu BM, Fan JM, Churchland MM, Kaufman MT, Kao JC, Ryu SI, Shenoy KV. PMID: 23160043; PMCID: PMC3638087.
      View in: PubMed   Mentions: 165     Fields:    Translation:Animals
    38. A brain machine interface control algorithm designed from a feedback control perspective. Annu Int Conf IEEE Eng Med Biol Soc. 2012; 2012:1318-22. Gilja V, Nuyujukian P, Chestek CA, Cunningham JP, Yu BM, Fan JM, Ryu SI, Shenoy KV. PMID: 23366141.
      View in: PubMed   Mentions: 6     Fields:    Translation:Animals
    39. Long-term stability of neural prosthetic control signals from silicon cortical arrays in rhesus macaque motor cortex. J Neural Eng. 2011 Aug; 8(4):045005. Chestek CA, Gilja V, Nuyujukian P, Foster JD, Fan JM, Kaufman MT, Churchland MM, Rivera-Alvidrez Z, Cunningham JP, Ryu SI, Shenoy KV. PMID: 21775782; PMCID: PMC3644617.
      View in: PubMed   Mentions: 143     Fields:    Translation:AnimalsCells
    40. Challenges and opportunities for next-generation intracortically based neural prostheses. IEEE Trans Biomed Eng. 2011 Jul; 58(7):1891-9. Gilja V, Chestek CA, Diester I, Henderson JM, Deisseroth K, Shenoy KV. PMID: 21257365; PMCID: PMC3150197.
      View in: PubMed   Mentions: 54     Fields:    Translation:HumansAnimals
    41. Monkey models for brain-machine interfaces: the need for maintaining diversity. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:1301-5. Nuyujukian P, Fan JM, Gilja V, Kalanithi PS, Chestek CA, Shenoy KV. PMID: 22254555.
      View in: PubMed   Mentions: 13     Fields:    Translation:HumansAnimals
    42. Spiking Neural Network Decoder for Brain-Machine Interfaces. Int IEEE EMBS Conf Neural Eng. 2011. Dethier J, Gilja V, Nuyujukian P, Elassaad SA, Shenoy KV, Boahen K. PMID: 24352611; PMCID: PMC3864805.
      View in: PubMed   Mentions: 7  
    43. A closed-loop human simulator for investigating the role of feedback control in brain-machine interfaces. J Neurophysiol. 2011 Apr; 105(4):1932-49. Cunningham JP, Nuyujukian P, Gilja V, Chestek CA, Ryu SI, Shenoy KV. PMID: 20943945; PMCID: PMC3075301.
      View in: PubMed   Mentions: 62     Fields:    Translation:HumansAnimals
    44. Autonomous head-mounted electrophysiology systems for freely behaving primates. Curr Opin Neurobiol. 2010 Oct; 20(5):676-86. Gilja V, Chestek CA, Nuyujukian P, Foster J, Shenoy KV. PMID: 20655733; PMCID: PMC3401169.
      View in: PubMed   Mentions: 17     Fields:    Translation:Animals
    45. HermesD: A High-Rate Long-Range Wireless Transmission System for Simultaneous Multichannel Neural Recording Applications. IEEE Trans Biomed Circuits Syst. 2010 Jun; 4(3):181-91. Miranda H, Gilja V, Chestek CA, Shenoy KV, Meng TH. PMID: 23853342.
      View in: PubMed   Mentions: 44     Fields:    
    46. HermesC: low-power wireless neural recording system for freely moving primates. IEEE Trans Neural Syst Rehabil Eng. 2009 Aug; 17(4):330-8. Chestek CA, Gilja V, Nuyujukian P, Kier RJ, Solzbacher F, Ryu SI, Harrison RR, Shenoy KV. PMID: 19497829.
      View in: PubMed   Mentions: 48     Fields:    Translation:Animals
    47. Wireless neural recording with single low-power integrated circuit. IEEE Trans Neural Syst Rehabil Eng. 2009 Aug; 17(4):322-9. Harrison RR, Kier RJ, Chestek CA, Gilja V, Nuyujukian P, Ryu S, Greger B, Solzbacher F, Shenoy KV. PMID: 19497825; PMCID: PMC2941647.
      View in: PubMed   Mentions: 47     Fields:    
    48. Factor-analysis methods for higher-performance neural prostheses. J Neurophysiol. 2009 Aug; 102(2):1315-30. Santhanam G, Yu BM, Gilja V, Ryu SI, Afshar A, Sahani M, Shenoy KV. PMID: 19297518; PMCID: PMC2724333.
      View in: PubMed   Mentions: 52     Fields:    Translation:AnimalsCells
    49. Methods for estimating neural firing rates, and their application to brain-machine interfaces. Neural Netw. 2009 Nov; 22(9):1235-46. Cunningham JP, Gilja V, Ryu SI, Shenoy KV. PMID: 19349143; PMCID: PMC2783748.
      View in: PubMed   Mentions: 28     Fields:    Translation:AnimalsCells
    50. Neural prosthetic systems: current problems and future directions. Annu Int Conf IEEE Eng Med Biol Soc. 2009; 2009:3369-75. Chestek CA, Cunningham JP, Gilja V, Nuyujukian P, Ryu SI, Shenoy KV. PMID: 19963796.
      View in: PubMed   Mentions: 26     Fields:    Translation:HumansAnimalsCells
    51. Toward optimal target placement for neural prosthetic devices. J Neurophysiol. 2008 Dec; 100(6):3445-57. Cunningham JP, Yu BM, Gilja V, Ryu SI, Shenoy KV. PMID: 18829845; PMCID: PMC2604856.
      View in: PubMed   Mentions: 15     Fields:    Translation:AnimalsCells
    52. HermesB: a continuous neural recording system for freely behaving primates. IEEE Trans Biomed Eng. 2007 Nov; 54(11):2037-50. Santhanam G, Linderman MD, Gilja V, Afshar A, Ryu SI, Meng TH, Shenoy KV. PMID: 18018699.
      View in: PubMed   Mentions: 54     Fields:    Translation:Animals
    53. Single-neuron stability during repeated reaching in macaque premotor cortex. J Neurosci. 2007 Oct 03; 27(40):10742-50. Chestek CA, Batista AP, Santhanam G, Yu BM, Afshar A, Cunningham JP, Gilja V, Ryu SI, Churchland MM, Shenoy KV. PMID: 17913908; PMCID: PMC6672821.
      View in: PubMed   Mentions: 83     Fields:    Translation:AnimalsCells
    54. Electrical signals propagate unbiased in cortex. Neuron. 2007 Sep 06; 55(5):684-6. Gilja V, Moore T. PMID: 17785175.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansAnimalsCells
    55. Increasing the performance of cortically-controlled prostheses. Conf Proc IEEE Eng Med Biol Soc. 2006; Suppl:6652-6. Shenoy KV, Santhanam G, Ryu SI, Afshar A, Yu BM, Gilja V, Linderman MD, Kalmar RS, Cunningham JP, Kemere CT, Batista AP, Churchland MM, Meng TH. PMID: 17959477.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    56. An autonomous, broadband, multi-channel neural recording system for freely behaving primates. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:1212-5. Linderman MD, Gilja V, Santhanam G, Afshar A, Ryu S, Meng TH, Shenoy KV. PMID: 17946450.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    57. Multiday electrophysiological recordings from freely behaving primates. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:5643-6. Gilja V, Linderman MD, Santhanam G, Afshar A, Ryu S, Meng TH, Shenoy KV. PMID: 17947159.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    58. Neural recording stability of chronic electrode arrays in freely behaving primates. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:4387-91. Linderman MD, Gilja V, Santhanam G, Afshar A, Ryu S, Meng TH, Shenoy KV. PMID: 17946626.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
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