Todd Coleman

Title(s)Adjunct Professor, Bioengineering
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Research 
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    Programmable evolution of optogenetic systems
    NIH R21GM143806Sep 15, 2021 - Aug 31, 2023
    Role: Co-Principal Investigator
    Inverse Methods for Spatiotemporal Characterization of Gastric Electrical Activity and its Association with Upper GI Symptoms from Cutaneous Multi-electrode Recordings
    NIH R03EB031189May 1, 2021 - Feb 28, 2023
    Role: Principal Investigator
    iGLAMOUR Study: Innovations in Glaucoma Adherence and monitoring Of Under-Represented minorities
    NIH R01MD014850Jan 15, 2021 - Dec 31, 2024
    Role: Co-Principal Investigator
    A Novel Model System for Restoring Hearing in vivo
    NIH R21DC018237Aug 1, 2020 - Jul 31, 2022
    Role: Co-Principal Investigator
    Behavioral, Physiological, and Quantitative Models of Pro-Social Behavior
    NIH R01MH110514Aug 1, 2016 - Apr 30, 2020
    Role: Principal Investigator
    SCH: Interface Monitoring System to Promote Residual Limb Health
    NIH R01EB019337Sep 22, 2014 - May 31, 2019
    Role: Principal Investigator

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Spontaneous enteric nervous system activity precedes maturation of gastrointestinal motility. bioRxiv. 2023 Aug 06. Dershowitz LB, Garcia HB, Perley AS, Coleman TP, Kaltschmidt JA. PMID: 37577464; PMCID: PMC10418201.
      View in: PubMed   Mentions:
    2. Exploring the Gut-Brain Connection in Gastroparesis with Autonomic and Gastric Myoelectric Monitoring. IEEE Trans Biomed Eng. 2023 Jun 13; PP. Subramanian S, Kunkel DC, Nguyen L, Coleman TP. PMID: 37310840.
      View in: PubMed   Mentions:    Fields:    
    3. Differentiation of Bolus Texture During Deglutition via High-Density Surface Electromyography: A Pilot Study. Laryngoscope. 2023 10; 133(10):2695-2703. Ornelas G, Bueno Garcia H, Bracken DJ, Linnemeyer-Risser K, Coleman TP, Weissbrod PA. PMID: 36734335.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    4. Non-Nutritive Suckling System for Real-Time Characterization of Intraoral Vacuum Profile in Full Term Neonates. IEEE J Transl Eng Health Med. 2023; 11:107-115. Truong P, Walsh E, Scott VP, Coleman T, Tilvawala G, Friend J. PMID: 36619906; PMCID: PMC9815562.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    5. Simultaneous Gut-Brain Electrophysiology Shows Cognition and Satiety Specific Coupling. Sensors (Basel). 2022 Nov 28; 22(23). Balasubramani PP, Walke A, Grennan G, Perley A, Purpura S, Ramanathan D, Coleman TP, Mishra J. PMID: 36501942.
      View in: PubMed   Mentions:    Fields:    
    6. Wireless Heart Sensor for Capturing Cardiac Orienting Response for Prediction of Neurodevelopmental Delay in Infants. Sensors (Basel). 2022 Nov 25; 22(23). Aguilar-Rivera M, Kable JA, Yevtushok L, Kulikovsky Y, Zymak-Zakutnya N, Dubchak I, Akhmedzhanova D, Wertelecki W, Chambers C, Coleman TP. PMID: 36501842; PMCID: PMC9739526.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    7. A flexible adhesive surface electrode array capable of cervical electroneurography during a sequential autonomic stress challenge. Sci Rep. 2022 Nov 14; 12(1):19467. Bu Y, Kurniawan JF, Prince J, Nguyen AKL, Ho B, Sit NLJ, Pham T, Wu VM, Tjhia B, Shin AJ, Wu TC, Tu XM, Rao R, Coleman TP, Lerman I. PMID: 36376365; PMCID: PMC9663551.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    8. Robust Regression and Optimal Transport Methods to Predict Gastrointestinal Disease Etiology From High Resolution EGG and Symptom Severity. IEEE Trans Biomed Eng. 2022 11; 69(11):3313-3325. Agrusa AS, Kunkel DC, Coleman TP. PMID: 35439119.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    9. Modeling relationships between rhythmic processes and neuronal spike timing. J Neurophysiol. 2022 09 01; 128(3):593-610. Rivière PD, Schamberg G, Coleman TP, Rangel LM. PMID: 35858125; PMCID: PMC9423776.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    10. Automated classification of sleep and wake from single day triaxial accelerometer data. Annu Int Conf IEEE Eng Med Biol Soc. 2022 07; 2022:3665-3668. Subramanian S, Coleman TP. PMID: 36086032.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    11. A Mutual Information Measure of Phase-Amplitude Coupling using High Dimensional Sparse Models. Annu Int Conf IEEE Eng Med Biol Soc. 2022 07; 2022:21-24. Perley A, Coleman TP. PMID: 36086427.
      View in: PubMed   Mentions: 1     Fields:    
    12. Peripheral Nerve Magnetoneurography With Optically Pumped Magnetometers. Front Physiol. 2022; 13:798376. Bu Y, Prince J, Mojtahed H, Kimball D, Shah V, Coleman T, Sarkar M, Rao R, Huang M, Schwindt P, Borna A, Lerman I. PMID: 35370794; PMCID: PMC8975546.
      View in: PubMed   Mentions: 3  
    13. Passive longitudinal weight and cardiopulmonary monitoring in the home bed. Sci Rep. 2021 12 21; 11(1):24376. Harrington N, Bui QM, Wei Z, Hernandez-Pacheco B, DeYoung PN, Wassell A, Duwaik B, Desai AS, Bhatt DL, Agnihotri P, Owens RL, Coleman TP, King KR. PMID: 34934065; PMCID: PMC8692625.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    14. Macrophage calcium reporter mice reveal immune cell communication in vitro and in vivo. Cell Rep Methods. 2021 12 20; 1(8). Taghdiri N, Calcagno DM, Fu Z, Huang K, Kohler RH, Weissleder R, Coleman TP, King KR. PMID: 35079727; PMCID: PMC8786215.
      View in: PubMed   Mentions: 2  
    15. Statistical uncertainty quantification to augment clinical decision support: a first implementation in sleep medicine. NPJ Digit Med. 2021 Sep 30; 4(1):142. Kang DY, DeYoung PN, Tantiongloc J, Coleman TP, Owens RL. PMID: 34593972; PMCID: PMC8484290.
      View in: PubMed   Mentions:
    16. Miniaturized wireless gastric pacing via inductive power transfer with non-invasive monitoring using cutaneous Electrogastrography. Bioelectron Med. 2021 Aug 24; 7(1):12. Perley A, Roustaei M, Aguilar-Rivera M, Kunkel DC, Hsiai TK, Coleman TP, Abiri P. PMID: 34425917; PMCID: PMC8383397.
      View in: PubMed   Mentions:
    17. Data-driven noise modeling of digital DNA melting analysis enables prediction of sequence discriminating power. Bioinformatics. 2021 Apr 01; 36(22-23):5337-5343. Langouche L, Aralar A, Sinha M, Lawrence SM, Fraley SI, Coleman TP. PMID: 33355665; PMCID: PMC8016452.
      View in: PubMed   Mentions: 1     Fields:    
    18. Building a Simple and Versatile Illumination System for Optogenetic Experiments. J Vis Exp. 2021 01 12; (167). Kyriakakis P, Fernandez de Cossio L, Howard PW, Kouv S, Catanho M, Hu VJ, Kyriakakis R, Allen ME, Ma Y, Aguilar-Rivera M, Coleman TP. PMID: 33522514; PMCID: PMC9119341.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    19. Interoceptive insular cortex participates in sensory processing of gastrointestinal malaise and associated behaviors. Sci Rep. 2020 12 10; 10(1):21642. Aguilar-Rivera M, Kim S, Coleman TP, Maldonado PE, Torrealba F. PMID: 33303809; PMCID: PMC7730439.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    20. Direct and Indirect Effects-An Information Theoretic Perspective. Entropy (Basel). 2020 Jul 31; 22(8). Schamberg G, Chapman W, Xie SP, Coleman TP. PMID: 33286625; PMCID: PMC7517455.
      View in: PubMed   Mentions: 1  
    21. Robust Methods to Detect Abnormal Initiation in the Gastric Slow Wave from Cutaneous Recordings. Annu Int Conf IEEE Eng Med Biol Soc. 2020 07; 2020:225-231. Agrusa AS, Allegra AB, Kunkel DC, Coleman TP. PMID: 33017970.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    22. Smart Electronic Eyedrop Bottle for Unobtrusive Monitoring of Glaucoma Medication Adherence. Sensors (Basel). 2020 Apr 30; 20(9). Aguilar-Rivera M, Erudaitius DT, Wu VM, Tantiongloc JC, Kang DY, Coleman TP, Baxter SL, Weinreb RN. PMID: 32366013; PMCID: PMC7248824.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    23. Bayesian inverse methods for spatiotemporal characterization of gastric electrical activity from cutaneous multi-electrode recordings. PLoS One. 2019; 14(10):e0220315. Allegra AB, Gharibans AA, Schamberg GE, Kunkel DC, Coleman TP. PMID: 31609972; PMCID: PMC6791545.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    24. A Deep Convolutional Neural Network Approach to Classify Normal and Abnormal Gastric Slow Wave Initiation From the High Resolution Electrogastrogram. IEEE Trans Biomed Eng. 2020 03; 67(3):854-867. Agrusa AS, Gharibans AA, Allegra AA, Kunkel DC, Coleman TP. PMID: 31199249.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    25. Spatial Patterns From High-Resolution Electrogastrography Correlate With Severity of Symptoms in Patients With Functional Dyspepsia and Gastroparesis. Clin Gastroenterol Hepatol. 2019 12; 17(13):2668-2677. Gharibans AA, Coleman TP, Mousa H, Kunkel DC. PMID: 31009794.
      View in: PubMed   Mentions: 33     Fields:    Translation:Humans
    26. High-density surface electromyography: A visualization method of laryngeal muscle activity. Laryngoscope. 2019 10; 129(10):2347-2353. Bracken DJ, Ornelas G, Coleman TP, Weissbrod PA. PMID: 30663053.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    27. A flexible likelihood approach for predicting neural spiking activity from oscillatory phase. J Neurosci Methods. 2019 01 01; 311:307-317. Johnson TD, Coleman TP, Rangel LM. PMID: 30367887; PMCID: PMC6387742.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    28. The activity of discrete sets of neurons in the posterior insula correlates with the behavioral expression and extinction of conditioned fear. J Neurophysiol. 2018 10 01; 120(4):1906-1913. Casanova JP, Aguilar-Rivera M, Rodríguez MLÁ, Coleman TP, Torrealba F. PMID: 30133379; PMCID: PMC6230801.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    29. In-Home Sleep Recordings in Military Veterans With Posttraumatic Stress Disorder Reveal Less REM and Deep Sleep <1 Hz. Front Hum Neurosci. 2018; 12:196. Onton JA, Matthews SC, Kang DY, Coleman TP. PMID: 29867419; PMCID: PMC5958207.
      View in: PubMed   Mentions: 10  
    30. A High-Resolution Digital DNA Melting Platform for Robust Sequence Profiling and Enhanced Genotype Discrimination. SLAS Technol. 2018 12; 23(6):580-591. Sinha M, Mack H, Coleman TP, Fraley SI. PMID: 29652558.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    31. Artifact Rejection Methodology Enables Continuous, Noninvasive Measurement of Gastric Myoelectric Activity in Ambulatory Subjects. Sci Rep. 2018 03 22; 8(1):5019. Gharibans AA, Smarr BL, Kunkel DC, Kriegsfeld LJ, Mousa HM, Coleman TP. PMID: 29568042; PMCID: PMC5864836.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    32. Emerging Technologies for Molecular Diagnosis of Sepsis. Clin Microbiol Rev. 2018 04; 31(2). Sinha M, Jupe J, Mack H, Coleman TP, Lawrence SM, Fraley SI. PMID: 29490932; PMCID: PMC5967692.
      View in: PubMed   Mentions: 90     Fields:    Translation:Humans
    33. Biosynthesis of Orthogonal Molecules Using Ferredoxin and Ferredoxin-NADP+ Reductase Systems Enables Genetically Encoded PhyB Optogenetics. ACS Synth Biol. 2018 02 16; 7(2):706-717. Kyriakakis P, Catanho M, Hoffner N, Thavarajah W, Hu VJ, Chao SS, Hsu A, Pham V, Naghavian L, Dozier LE, Patrick GN, Coleman TP. PMID: 29301067; PMCID: PMC5820651.
      View in: PubMed   Mentions: 16     Fields:    Translation:HumansAnimalsCells
    34. Epidermal Electrode Technology for Detecting Ultrasonic Perturbation of Sensory Brain Activity. IEEE Trans Biomed Eng. 2018 06; 65(6):1272-1280. Huang S, Fisher JAN, Ye M, Kim YS, Ma R, Nabili M, Krauthamer V, Myers MR, Coleman TP, Welle CG. PMID: 28858781; PMCID: PMC9472568.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    35. Scalable Manufacturing of Solderable and Stretchable Physiologic Sensing Systems. Adv Mater. 2017 Oct; 29(39). Kim YS, Lu J, Shih B, Gharibans A, Zou Z, Matsuno K, Aguilera R, Han Y, Meek A, Xiao J, Tolley MT, Coleman TP. PMID: 28837756.
      View in: PubMed   Mentions: 17     Fields:    
    36. A State Space and Density Estimation Framework for Sleep Staging in Obstructive Sleep Apnea. IEEE Trans Biomed Eng. 2018 06; 65(6):1201-1212. Kang DY, DeYoung PN, Malhotra A, Owens RL, Coleman TP. PMID: 28499990; PMCID: PMC5677582.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    37. Visualization of Whole-Night Sleep EEG From 2-Channel Mobile Recording Device Reveals Distinct Deep Sleep Stages with Differential Electrodermal Activity. Front Hum Neurosci. 2016; 10:605. Onton JA, Kang DY, Coleman TP. PMID: 27965558; PMCID: PMC5126123.
      View in: PubMed   Mentions: 14  
    38. The Use of Cardiac Orienting Responses as an Early and Scalable Biomarker of Alcohol-Related Neurodevelopmental Impairment. Alcohol Clin Exp Res. 2017 01; 41(1):128-138. Mesa DA, Kable JA, Coles CD, Jones KL, Jones KL, Yevtushok L, Kulikovsky Y, Wertelecki W, Coleman TP, Chambers CD, CIFASD. PMID: 27883195; PMCID: PMC5205554.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    39. Learning Minimal Latent Directed Information Polytrees. Neural Comput. 2016 09; 28(9):1723-68. Etesami J, Kiyavash N, Coleman T. PMID: 27391682.
      View in: PubMed   Mentions:    Fields:    
    40. High-Resolution Electrogastrogram: A Novel, Noninvasive Method for Determining Gastric Slow-Wave Direction and Speed. IEEE Trans Biomed Eng. 2017 04; 64(4):807-815. Gharibans AA, Kim S, Kunkel D, Coleman TP. PMID: 27305668; PMCID: PMC5474202.
      View in: PubMed   Mentions: 21     Fields:    
    41. Scalable Microfabrication Procedures for Adhesive-Integrated Flexible and Stretchable Electronic Sensors. Sensors (Basel). 2015 Sep 16; 15(9):23459-76. Kang DY, Kim YS, Ornelas G, Sinha M, Naidu K, Coleman TP. PMID: 26389915; PMCID: PMC4610501.
      View in: PubMed   Mentions: 12     Fields:    
    42. Large-scale spatiotemporal spike patterning consistent with wave propagation in motor cortex. Nat Commun. 2015 May 21; 6:7169. Takahashi K, Kim S, Coleman TP, Brown KA, Suminski AJ, Best MD, Hatsopoulos NG. PMID: 25994554; PMCID: PMC4443713.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    43. EEG gamma band oscillations differentiate the planning of spatially directed movements of the arm versus eye: multivariate empirical mode decomposition analysis. IEEE Trans Neural Syst Rehabil Eng. 2014 Sep; 22(5):1083-96. Park C, Plank M, Snider J, Kim S, Huang HC, Gepshtein S, Coleman TP, Poizner H. PMID: 25014959.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    44. Fractal design concepts for stretchable electronics. Nat Commun. 2014; 5:3266. Fan JA, Yeo WH, Su Y, Hattori Y, Lee W, Jung SY, Zhang Y, Liu Z, Cheng H, Falgout L, Bajema M, Coleman T, Gregoire D, Larsen RJ, Huang Y, Rogers JA. PMID: 24509865.
      View in: PubMed   Mentions: 138     Fields:    Translation:HumansCTClinical Trials
    45. Circadian rhythm of redox state regulates excitability in suprachiasmatic nucleus neurons. Science. 2012 Aug 17; 337(6096):839-42. Wang TA, Yu YV, Govindaiah G, Ye X, Artinian L, Coleman TP, Sweedler JV, Cox CL, Gillette MU. PMID: 22859819; PMCID: PMC3490628.
      View in: PubMed   Mentions: 109     Fields:    Translation:AnimalsCells
    46. Granger causality analysis of functional connectivity of spiking neurons in orofacial motor cortex during chewing and swallowing. Annu Int Conf IEEE Eng Med Biol Soc. 2012; 2012:4587-90. Takahashi K, Pesce L, Iriarte-Diaz J, Kim S, Coleman TP, Hatsopoulos NG, Ross CF. PMID: 23366949.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    47. A stochastic control approach to optimally designing hierarchical flash sets in P300 communication prostheses. IEEE Trans Neural Syst Rehabil Eng. 2012 Jan; 20(1):102-12. Ma R, Aghasadeghi N, Jarzebowski J, Bretl T, Coleman TP. PMID: 22203722.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    48. Epidermal electronics. Science. 2011 Aug 12; 333(6044):838-43. Kim DH, Lu N, Ma R, Kim YS, Kim RH, Wang S, Wu J, Won SM, Tao H, Islam A, Yu KJ, Kim TI, Chowdhury R, Ying M, Xu L, Li M, Chung HJ, Keum H, McCormick M, Liu P, Zhang YW, Omenetto FG, Huang Y, Coleman T, Rogers JA. PMID: 21836009.
      View in: PubMed   Mentions: 643     Fields:    Translation:Humans
    49. Information transfer between neurons in the motor cortex triggered by visual cues. Annu Int Conf IEEE Eng Med Biol Soc. 2011; 2011:7278-81. Kim S, Takahashi K, Hatsopoulos NG, Coleman TP. PMID: 22256019.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    50. A computationally efficient method for nonparametric modeling of neural spiking activity with point processes. Neural Comput. 2010 Aug; 22(8):2002-30. Coleman TP, Sarma SS. PMID: 20438334.
      View in: PubMed   Mentions: 7     Fields:    Translation:AnimalsCells
    51. Estimating the directed information to infer causal relationships in ensemble neural spike train recordings. J Comput Neurosci. 2011 Feb; 30(1):17-44. Quinn CJ, Coleman TP, Kiyavash N, Hatsopoulos NG. PMID: 20582566; PMCID: PMC3171872.
      View in: PubMed   Mentions: 38     Fields:    Translation:AnimalsCells
    52. A stretchable electrode array for non-invasive, skin-mounted measurement of electrocardiography (ECG), electromyography (EMG) and electroencephalography (EEG). Annu Int Conf IEEE Eng Med Biol Soc. 2010; 2010:6405-8. Ma R, Kim DH, McCormick M, Coleman T, Rogers J. PMID: 21096704.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    53. A dynamical point process model of auditory nerve spiking in response to complex sounds. J Comput Neurosci. 2010 Aug; 29(1-2):193-201. Trevino A, Coleman TP, Allen J. PMID: 19353258; PMCID: PMC4138954.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
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