Stephen Burley

Title(s)Adjunct Professor, School of Pharmacy and Pharmaceutical Science
SchoolHealth Sciences
Address9500 Gilman Drive #0657
La Jolla CA 92093
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    1. Real time structural search of the protein data bank. PLoS Comput Biol. 2020 Jul 08; 16(7):e1007970. Guzenko D, Burley SK, Duarte JM. PMID: 32639954.
      View in: PubMed   Mentions:    Fields:    
    2. Insights from 20?years of the Molecule of the Month. Biochem Mol Biol Educ. 2020 Jun 17. Goodsell DS, Zardecki C, Berman HM, Burley SK. PMID: 32558264.
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    3. How to help the free market fight coronavirus. Nature. 2020 04; 580(7802):167. Burley SK. PMID: 32210376.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansPHPublic Health
    4. Impact of the Protein Data Bank on antineoplastic approvals. Drug Discov Today. 2020 May; 25(5):837-850. Westbrook JD, Soskind R, Hudson BP, Burley SK. PMID: 32068073.
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    5. D3R grand challenge 4: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J Comput Aided Mol Des. 2020 Feb; 34(2):99-119. Parks CD, Gaieb Z, Chiu M, Yang H, Shao C, Walters WP, Jansen JM, McGaughey G, Lewis RA, Bembenek SD, Ameriks MK, Mirzadegan T, Burley SK, Amaro RE, Gilson MK. PMID: 31974851.
      View in: PubMed   Mentions: 3     Fields:    
    6. RCSB Protein Data Bank: Enabling biomedical research and drug discovery. Protein Sci. 2020 01; 29(1):52-65. Goodsell DS, Zardecki C, Di Costanzo L, Duarte JM, Hudson BP, Persikova I, Segura J, Shao C, Voigt M, Westbrook JD, Young JY, Burley SK. PMID: 31531901.
      View in: PubMed   Mentions: 3     Fields:    
    7. Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. Structure. 2019 12 03; 27(12):1745-1759. Berman HM, Adams PD, Bonvin AA, Burley SK, Carragher B, Chiu W, DiMaio F, Ferrin TE, Gabanyi MJ, Goddard TD, Griffin PR, Haas J, Hanke CA, Hoch JC, Hummer G, Kurisu G, Lawson CL, Leitner A, Markley JL, Meiler J, Montelione GT, Phillips GN, Prisner T, Rappsilber J, Schriemer DC, Schwede T, Seidel CAM, Strutzenberg TS, Svergun DI, Tajkhorshid E, Trewhella J, Vallat B, Velankar S, Vuister GW, Webb B, Westbrook JD, White KL, Sali A. PMID: 31780431.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    8. A Novel Acquired Exon 20 EGFR M766Q Mutation in Lung Adenocarcinoma Mediates Osimertinib Resistance but is Sensitive to Neratinib and Poziotinib. J Thorac Oncol. 2019 11; 14(11):1982-1988. Castellano GM, Aisner J, Burley SK, Vallat B, Yu HA, Pine SR, Ganesan S. PMID: 31254668.
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    9. Continuous Evaluation of Ligand Protein Predictions: A Weekly Community Challenge for Drug Docking. Structure. 2019 08 06; 27(8):1326-1335.e4. Wagner JR, Churas CP, Liu S, Swift RV, Chiu M, Shao C, Feher VA, Burley SK, Gilson MK, Amaro RE. PMID: 31257108.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    10. Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). Acta Crystallogr D Struct Biol. 2019 Apr 01; 75(Pt 4):451-454. Adams PD, Afonine PV, Baskaran K, Berman HM, Berrisford J, Bricogne G, Brown DG, Burley SK, Chen M, Feng Z, Flensburg C, Gutmanas A, Hoch JC, Ikegawa Y, Kengaku Y, Krissinel E, Kurisu G, Liang Y, Liebschner D, Mak L, Markley JL, Moriarty NW, Murshudov GN, Noble M, Peisach E, Persikova I, Poon BK, Sobolev OV, Ulrich EL, Velankar S, Vonrhein C, Westbrook J, Wojdyr M, Yokochi M, Young JY. PMID: 30988261.
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    11. BioJava 5: A community driven open-source bioinformatics library. PLoS Comput Biol. 2019 02; 15(2):e1006791. Lafita A, Bliven S, Prlic A, Guzenko D, Rose PW, Bradley A, Pavan P, Myers-Turnbull D, Valasatava Y, Heuer M, Larson M, Burley SK, Duarte JM. PMID: 30735498.
      View in: PubMed   Mentions: 2     Fields:    
    12. D3R Grand Challenge 3: blind prediction of protein-ligand poses and affinity rankings. J Comput Aided Mol Des. 2019 01; 33(1):1-18. Gaieb Z, Parks CD, Chiu M, Yang H, Shao C, Walters WP, Lambert MH, Nevins N, Bembenek SD, Ameriks MK, Mirzadegan T, Burley SK, Amaro RE, Gilson MK. PMID: 30632055.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    13. RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. Nucleic Acids Res. 2019 01 08; 47(D1):D464-D474. Burley SK, Berman HM, Bhikadiya C, Bi C, Chen L, Di Costanzo L, Christie C, Dalenberg K, Duarte JM, Dutta S, Feng Z, Ghosh S, Goodsell DS, Green RK, Guranovic V, Guzenko D, Hudson BP, Kalro T, Liang Y, Lowe R, Namkoong H, Peisach E, Periskova I, Prlic A, Randle C, Rose A, Rose P, Sala R, Sekharan M, Shao C, Tan L, Tao YP, Valasatava Y, Voigt M, Westbrook J, Woo J, Yang H, Young J, Zhuravleva M, Zardecki C. PMID: 30357411.
      View in: PubMed   Mentions: 46     Fields:    Translation:Cells
    14. How Structural Biologists and the Protein Data Bank Contributed to Recent FDA New Drug Approvals. Structure. 2019 02 05; 27(2):211-217. Westbrook JD, Burley SK. PMID: 30595456.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansAnimalsCells
    15. Outlier analyses of the Protein Data Bank archive using a probability-density-ranking approach. Sci Data. 2018 12 11; 5:180293. Shao C, Liu Z, Yang H, Wang S, Burley SK. PMID: 30532050.
      View in: PubMed   Mentions: 1     Fields:    
    16. Amino acid modifications for conformationally constraining naturally occurring and engineered peptide backbones: Insights from the Protein Data Bank. Biopolymers. 2018 Aug; 109(10):e23230. Di Costanzo L, Dutta S, Burley SK. PMID: 30368772.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    17. Analysis of impact metrics for the Protein Data Bank. Sci Data. 2018 10 16; 5:180212. Markosian C, Di Costanzo L, Sekharan M, Shao C, Burley SK, Zardecki C. PMID: 30325351.
      View in: PubMed   Mentions: 2     Fields:    
    18. Investigation of protein quaternary structure via stoichiometry and symmetry information. PLoS One. 2018; 13(6):e0197176. Korkmaz S, Duarte JM, Prlic A, Goksuluk D, Zararsiz G, Saracbasi O, Burley SK, Rose PW. PMID: 29864163.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    19. Comparison of Alicyclobacillus acidocaldarius o-Succinylbenzoate Synthase to Its Promiscuous N-Succinylamino Acid Racemase/ o-Succinylbenzoate Synthase Relatives. Biochemistry. 2018 07 03; 57(26):3676-3689. Odokonyero D, McMillan AW, Ramagopal UA, Toro R, Truong DP, Zhu M, Lopez MS, Somiari B, Herman M, Aziz A, Bonanno JB, Hull KG, Burley SK, Romo D, Almo SC, Glasner ME. PMID: 29767960.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    20. SOD1 Phosphorylation by mTORC1 Couples Nutrient Sensing and Redox Regulation. Mol Cell. 2018 05 03; 70(3):502-515.e8. Tsang CK, Chen M, Cheng X, Qi Y, Chen Y, Das I, Li X, Vallat B, Fu LW, Qian CN, Wang HY, White E, Burley SK, Zheng XFS. PMID: 29727620.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimalsCells
    21. Recon3D enables a three-dimensional view of gene variation in human metabolism. Nat Biotechnol. 2018 03; 36(3):272-281. Brunk E, Sahoo S, Zielinski DC, Altunkaya A, Dräger A, Mih N, Gatto F, Nilsson A, Preciat Gonzalez GA, Aurich MK, Prlic A, Sastry A, Danielsdottir AD, Heinken A, Noronha A, Rose PW, Burley SK, Fleming RMT, Nielsen J, Thiele I, Palsson BO. PMID: 29457794.
      View in: PubMed   Mentions: 25     Fields:    Translation:Humans
    22. Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. Database (Oxford). 2018 01 01; 2018. Young JY, Westbrook JD, Feng Z, Peisach E, Persikova I, Sala R, Sen S, Berrisford JM, Swaminathan GJ, Oldfield TJ, Gutmanas A, Igarashi R, Armstrong DR, Baskaran K, Chen L, Chen M, Clark AR, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Ikegawa Y, Kengaku Y, Lawson CL, Liang Y, Mak L, Mukhopadhyay A, Narayanan B, Nishiyama K, Patwardhan A, Sahni G, Sanz-García E, Sato J, Sekharan MR, Shao C, Smart OS, Tan L, van Ginkel G, Yang H, Zhuravleva MA, Markley JL, Nakamura H, Kurisu G, Kleywegt GJ, Velankar S, Berman HM, Burley SK. PMID: 29688351.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    23. Integrative/Hybrid Methods Structural Biology: Role of Macromolecular Crystallography. Adv Exp Med Biol. 2018; 1105:11-18. Burley SK. PMID: 30617820.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    24. Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework. Genome Med. 2017 Dec 18; 9(1):113. Glusman G, Rose PW, Prlic A, Dougherty J, Duarte JM, Hoffman AS, Barton GJ, Bendixen E, Bergquist T, Bock C, Brunk E, Buljan M, Burley SK, Cai B, Carter H, Gao J, Godzik A, Heuer M, Hicks M, Hrabe T, Karchin R, Leman JK, Lane L, Masica DL, Mooney SD, Moult J, Omenn GS, Pearl F, Pejaver V, Reynolds SM, Rokem A, Schwede T, Song S, Tilgner H, Valasatava Y, Zhang Y, Deutsch EW. PMID: 29254494.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    25. D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J Comput Aided Mol Des. 2018 01; 32(1):1-20. Gaieb Z, Liu S, Gathiaka S, Chiu M, Yang H, Shao C, Feher VA, Walters WP, Kuhn B, Rudolph MG, Burley SK, Gilson MK, Amaro RE. PMID: 29204945.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    26. Validation of Structures in the Protein Data Bank. Structure. 2017 12 05; 25(12):1916-1927. Gore S, Sanz García E, Hendrickx PMS, Gutmanas A, Westbrook JD, Yang H, Feng Z, Baskaran K, Berrisford JM, Hudson BP, Ikegawa Y, Kobayashi N, Lawson CL, Mading S, Mak L, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Peisach E, Sahni G, Sekharan MR, Sen S, Shao C, Smart OS, Ulrich EL, Yamashita R, Quesada M, Young JY, Nakamura H, Markley JL, Berman HM, Burley SK, Velankar S, Kleywegt GJ. PMID: 29174494.
      View in: PubMed   Mentions: 22     Fields:    
    27. RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education. Protein Sci. 2018 01; 27(1):316-330. Burley SK, Berman HM, Christie C, Duarte JM, Feng Z, Westbrook J, Young J, Zardecki C. PMID: 29067736.
      View in: PubMed   Mentions: 16     Fields:    Translation:Humans
    28. PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models. Structure. 2017 09 05; 25(9):1317-1318. Burley SK, Kurisu G, Markley JL, Nakamura H, Velankar S, Berman HM, Sali A, Schwede T, Trewhella J. PMID: 28877501.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    29. The hidden treasure in your data: phasing with unexpected weak anomalous scatterers from routine data sets. Acta Crystallogr F Struct Biol Commun. 2017 04 01; 73(Pt 4):184-195. Hegde RP, Fedorov AA, Sauder JM, Burley SK, Almo SC, Ramagopal UA. PMID: 28368276.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    30. Impact of genetic variation on three dimensional structure and function of proteins. PLoS One. 2017; 12(3):e0171355. Bhattacharya R, Rose PW, Burley SK, Prlic A. PMID: 28296894.
      View in: PubMed   Mentions: 2     Fields:    
    31. Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive. Structure. 2017 03 07; 25(3):458-468. Shao C, Yang H, Westbrook JD, Young JY, Zardecki C, Burley SK. PMID: 28216043.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    32. OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive. Structure. 2017 03 07; 25(3):536-545. Young JY, Westbrook JD, Feng Z, Sala R, Peisach E, Oldfield TJ, Sen S, Gutmanas A, Armstrong DR, Berrisford JM, Chen L, Chen M, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Igarashi R, Ikegawa Y, Kobayashi N, Lawson CL, Liang Y, Mading S, Mak L, Mir MS, Mukhopadhyay A, Patwardhan A, Persikova I, Rinaldi L, Sanz-Garcia E, Sekharan MR, Shao C, Swaminathan GJ, Tan L, Ulrich EL, van Ginkel G, Yamashita R, Yang H, Zhuravleva MA, Quesada M, Kleywegt GJ, Berman HM, Markley JL, Nakamura H, Velankar S, Burley SK. PMID: 28190782.
      View in: PubMed   Mentions: 20     Fields:    Translation:Cells
    33. Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive. Methods Mol Biol. 2017; 1607:627-641. Burley SK, Berman HM, Kleywegt GJ, Markley JL, Nakamura H, Velankar S. PMID: 28573592.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    34. A public database of macromolecular diffraction experiments. Acta Crystallogr D Struct Biol. 2016 11 01; 72(Pt 11):1181-1193. Grabowski M, Langner KM, Cymborowski M, Porebski PJ, Sroka P, Zheng H, Cooper DR, Zimmerman MD, Elsliger MA, Burley SK, Minor W. PMID: 27841751.
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    35. The RCSB protein data bank: integrative view of protein, gene and 3D structural information. Nucleic Acids Res. 2017 01 04; 45(D1):D271-D281. Rose PW, Prlic A, Altunkaya A, Bi C, Bradley AR, Christie CH, Costanzo LD, Duarte JM, Dutta S, Feng Z, Green RK, Goodsell DS, Hudson B, Kalro T, Lowe R, Peisach E, Randle C, Rose AS, Shao C, Tao YP, Valasatava Y, Voigt M, Westbrook JD, Woo J, Yang H, Young JY, Zardecki C, Berman HM, Burley SK. PMID: 27794042.
      View in: PubMed   Mentions: 120     Fields:    Translation:Cells
    36. D3R grand challenge 2015: Evaluation of protein-ligand pose and affinity predictions. J Comput Aided Mol Des. 2016 09; 30(9):651-668. Gathiaka S, Liu S, Chiu M, Yang H, Stuckey JA, Kang YN, Delproposto J, Kubish G, Dunbar JB, Carlson HA, Burley SK, Walters WP, Amaro RE, Feher VA, Gilson MK. PMID: 27696240.
      View in: PubMed   Mentions: 42     Fields:    Translation:Cells
    37. Using the Tools and Resources of the RCSB Protein Data Bank. Curr Protoc Bioinformatics. 2016 09 07; 55:1.9.1-1.9.35. Costanzo LD, Ghosh S, Zardecki C, Burley SK. PMID: 27603019.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    38. Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank. Bioinformatics. 2016 12 15; 32(24):3833-3835. Prlic A, Kalro T, Bhattacharya R, Christie C, Burley SK, Rose PW. PMID: 27551105.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    39. The archiving and dissemination of biological structure data. Curr Opin Struct Biol. 2016 10; 40:17-22. Berman HM, Burley SK, Kleywegt GJ, Markley JL, Nakamura H, Velankar S. PMID: 27450113.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    40. DCC: a Swiss army knife for structure factor analysis and validation. J Appl Crystallogr. 2016 Jun 01; 49(Pt 3):1081-1084. Yang H, Peisach E, Westbrook JD, Young J, Berman HM, Burley SK. PMID: 27275151.
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    41. Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop. Structure. 2016 Apr 05; 24(4):502-508. Adams PD, Aertgeerts K, Bauer C, Bell JA, Berman HM, Bhat TN, Blaney JM, Bolton E, Bricogne G, Brown D, Burley SK, Case DA, Clark KL, Darden T, Emsley P, Feher VA, Feng Z, Groom CR, Harris SF, Hendle J, Holder T, Joachimiak A, Kleywegt GJ, Krojer T, Marcotrigiano J, Mark AE, Markley JL, Miller M, Minor W, Montelione GT, Murshudov G, Nakagawa A, Nakamura H, Nicholls A, Nicklaus M, Nolte RT, Padyana AK, Peishoff CE, Pieniazek S, Read RJ, Shao C, Sheriff S, Smart O, Soisson S, Spurlino J, Stouch T, Svobodova R, Tempel W, Terwilliger TC, Tronrud D, Velankar S, Ward SC, Warren GL, Westbrook JD, Williams P, Yang H, Young J. PMID: 27050687.
      View in: PubMed   Mentions: 18     Fields:    Translation:Cells
    42. Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. Structure. 2015 Jul 07; 23(7):1156-67. Sali A, Berman HM, Schwede T, Trewhella J, Kleywegt G, Burley SK, Markley J, Nakamura H, Adams P, Bonvin AM, Chiu W, Peraro MD, Di Maio F, Ferrin TE, Grünewald K, Gutmanas A, Henderson R, Hummer G, Iwasaki K, Johnson G, Lawson CL, Meiler J, Marti-Renom MA, Montelione GT, Nilges M, Nussinov R, Patwardhan A, Rappsilber J, Read RJ, Saibil H, Schröder GF, Schwieters CD, Seidel CA, Svergun D, Topf M, Ulrich EL, Velankar S, Westbrook JD. PMID: 26095030.
      View in: PubMed   Mentions: 53     Fields:    Translation:HumansCells
    43. The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology. PLoS Biol. 2015 May; 13(5):e1002140. Goodsell DS, Dutta S, Zardecki C, Voigt M, Berman HM, Burley SK. PMID: 25942442.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    44. Identification of a Non-Gatekeeper Hot Spot for Drug-Resistant Mutations in mTOR Kinase. Cell Rep. 2015 Apr 21; 11(3):446-59. Wu TJ, Wang X, Zhang Y, Meng L, Kerrigan JE, Burley SK, Zheng XF. PMID: 25865887.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansAnimalsCells
    45. The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. Nucleic Acids Res. 2015 Jan; 43(Database issue):D345-56. Rose PW, Prlic A, Bi C, Bluhm WF, Christie CH, Dutta S, Green RK, Goodsell DS, Westbrook JD, Woo J, Young J, Zardecki C, Berman HM, Bourne PE, Burley SK. PMID: 25428375.
      View in: PubMed   Mentions: 164     Fields:    Translation:Cells
    46. Response to On prompt update of literature references in the Protein Data Bank. Acta Crystallogr D Biol Crystallogr. 2014 Oct; 70(Pt 10):2780. Berman HM, Burley SK, Kleywegt GJ, Nakamura H, Markley JL. PMID: 25286863.
      View in: PubMed   Mentions: 1     Fields:    
    47. Crystal structure of Clostridium acetobutylicum Aspartate kinase (CaAK): An important allosteric enzyme for amino acids production. Biotechnol Rep (Amst). 2014 Sep 01; 3:73-85. Manjasetty BA, Chance MR, Burley SK, Panjikar S, Almo SC. PMID: 25170437.
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    48. Integrative structure-function mapping of the nucleoporin Nup133 suggests a conserved mechanism for membrane anchoring of the nuclear pore complex. Mol Cell Proteomics. 2014 Nov; 13(11):2911-26. Kim SJ, Fernandez-Martinez J, Sampathkumar P, Martel A, Matsui T, Tsuruta H, Weiss TM, Shi Y, Markina-Inarrairaegui A, Bonanno JB, Sauder JM, Burley SK, Chait BT, Almo SC, Rout MP, Sali A. PMID: 25139911.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    49. Functional annotation and structural characterization of a novel lactonase hydrolyzing D-xylono-1,4-lactone-5-phosphate and L-arabino-1,4-lactone-5-phosphate. Biochemistry. 2014 Jul 22; 53(28):4727-38. Korczynska M, Xiang DF, Zhang Z, Xu C, Narindoshvili T, Kamat SS, Williams HJ, Chang SS, Kolb P, Hillerich B, Sauder JM, Burley SK, Almo SC, Swaminathan S, Shoichet BK, Raushel FM. PMID: 24955762.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    50. Loss of quaternary structure is associated with rapid sequence divergence in the OSBS family. Proc Natl Acad Sci U S A. 2014 Jun 10; 111(23):8535-40. Odokonyero D, Sakai A, Patskovsky Y, Malashkevich VN, Fedorov AA, Bonanno JB, Fedorov EV, Toro R, Agarwal R, Wang C, Ozerova ND, Yew WS, Sauder JM, Swaminathan S, Burley SK, Almo SC, Glasner ME. PMID: 24872444.
      View in: PubMed   Mentions: 5     Fields:    Translation:Cells
    51. Revealing structural views of biology. Biopolymers. 2013 Nov; 99(11):817-24. Goodsell DS, Burley SK, Berman HM. PMID: 23821527.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    52. Divergent evolution of ligand binding in the o-succinylbenzoate synthase family. Biochemistry. 2013 Oct 22; 52(42):7512-21. Odokonyero D, Ragumani S, Lopez MS, Bonanno JB, Ozerova ND, Woodard DR, Machala BW, Swaminathan S, Burley SK, Almo SC, Glasner ME. PMID: 24060347.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    53. Structural basis for the divergence of substrate specificity and biological function within HAD phosphatases in lipopolysaccharide and sialic acid biosynthesis. Biochemistry. 2013 Aug 13; 52(32):5372-86. Daughtry KD, Huang H, Malashkevich V, Patskovsky Y, Liu W, Ramagopal U, Sauder JM, Burley SK, Almo SC, Dunaway-Mariano D, Allen KN. PMID: 23848398.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    54. Protein production from the structural genomics perspective: achievements and future needs. Curr Opin Struct Biol. 2013 Jun; 23(3):335-44. Almo SC, Garforth SJ, Hillerich BS, Love JD, Seidel RD, Burley SK. PMID: 23642905.
      View in: PubMed   Mentions: 10     Fields:    Translation:AnimalsCells
    55. Structure, dynamics, evolution, and function of a major scaffold component in the nuclear pore complex. Structure. 2013 Apr 02; 21(4):560-71. Sampathkumar P, Kim SJ, Upla P, Rice WJ, Phillips J, Timney BL, Pieper U, Bonanno JB, Fernandez-Martinez J, Hakhverdyan Z, Ketaren NE, Matsui T, Weiss TM, Stokes DL, Sauder JM, Burley SK, Sali A, Rout MP, Almo SC. PMID: 23499021.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    56. PDB40: The Protein Data Bank celebrates its 40th birthday. Biopolymers. 2013 Mar; 99(3):165-7. Burley SK. PMID: 23280389.
      View in: PubMed   Mentions: 3     Fields:    
    57. A public-private partnership to unlock the untargeted kinome. Nat Chem Biol. 2013 Jan; 9(1):3-6. Knapp S, Arruda P, Blagg J, Burley S, Drewry DH, Edwards A, Fabbro D, Gillespie P, Gray NS, Kuster B, Lackey KE, Mazzafera P, Tomkinson NC, Willson TM, Workman P, Zuercher WJ. PMID: 23238671.
      View in: PubMed   Mentions: 40     Fields:    
    58. Structure of alanine racemase from Oenococcus oeni with bound pyridoxal 5'-phosphate. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jan 01; 69(Pt 1):15-9. Palani K, Burley SK, Swaminathan S. PMID: 23295479.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    59. Structure of a periplasmic glucose-binding protein from Thermotoga maritima. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Dec 01; 68(Pt 12):1460-4. Palani K, Kumaran D, Burley SK, Swaminathan S. PMID: 23192024.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    60. 1-methylthio-D-xylulose 5-phosphate methylsulfurylase: a novel route to 1-deoxy-D-xylulose 5-phosphate in Rhodospirillum rubrum. Biochemistry. 2012 Oct 23; 51(42):8324-6. Warlick BP, Evans BS, Erb TJ, Ramagopal UA, Sriram J, Imker HJ, Sauder JM, Bonanno JB, Burley SK, Tabita FR, Almo SC, Sweedler JS, Gerlt JA. PMID: 23035785.
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    61. Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases. RNA. 2012 Nov; 18(11):2020-8. Garside EL, Schellenberg MJ, Gesner EM, Bonanno JB, Sauder JM, Burley SK, Almo SC, Mehta G, MacMillan AM. PMID: 23006625.
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    62. Atomic structure of the nuclear pore complex targeting domain of a Nup116 homologue from the yeast, Candida glabrata. Proteins. 2012 Aug; 80(8):2110-6. Sampathkumar P, Kim SJ, Manglicmot D, Bain KT, Gilmore J, Gheyi T, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Matsui T, Tsuruta H, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Rout MP, Sali A, Sauder JM, Almo SC, Burley SK. PMID: 22544723.
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    63. Rapid-access, high-throughput synchrotron crystallography for drug discovery. Trends Pharmacol Sci. 2012 May; 33(5):261-7. Wasserman SR, Koss JW, Sojitra ST, Morisco LL, Burley SK. PMID: 22521107.
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    64. Structure and catalytic mechanism of LigI: insight into the amidohydrolase enzymes of cog3618 and lignin degradation. Biochemistry. 2012 Apr 24; 51(16):3497-507. Hobbs ME, Malashkevich V, Williams HJ, Xu C, Sauder JM, Burley SK, Almo SC, Raushel FM. PMID: 22475079.
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    65. The catalase activity of diiron adenine deaminase. Protein Sci. 2011 Dec; 20(12):2080-94. Kamat SS, Holmes-Hampton GP, Bagaria A, Kumaran D, Tichy SE, Gheyi T, Zheng X, Bain K, Groshong C, Emtage S, Sauder JM, Burley SK, Swaminathan S, Lindahl PA, Raushel FM. PMID: 21998098.
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    66. Structural insight into mechanism and diverse substrate selection strategy of L-ribulokinase. Proteins. 2012 Jan; 80(1):261-8. Agarwal R, Burley SK, Swaminathan S. PMID: 22072612.
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    67. Structural variation in bacterial glyoxalase I enzymes: investigation of the metalloenzyme glyoxalase I from Clostridium acetobutylicum. J Biol Chem. 2011 Nov 04; 286(44):38367-74. Suttisansanee U, Lau K, Lagishetty S, Rao KN, Swaminathan S, Sauder JM, Burley SK, Honek JF. PMID: 21914803.
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    68. Gimme phospho-serine five! Capping enzyme guanylyltransferase recognition of the RNA polymerase II CTD. Mol Cell. 2011 Jul 22; 43(2):163-5. Burley SK, Sonenberg N. PMID: 21777807.
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    69. Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1. Structure. 2011 Jul 13; 19(7):930-44. Teplova M, Malinina L, Darnell JC, Song J, Lu M, Abagyan R, Musunuru K, Teplov A, Burley SK, Darnell RB, Patel DJ. PMID: 21742260.
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    70. Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine. Biochemistry. 2011 Aug 02; 50(30):6589-97. Goble AM, Zhang Z, Sauder JM, Burley SK, Swaminathan S, Raushel FM. PMID: 21710971.
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    71. Characterization of metalloproteins by high-throughput X-ray absorption spectroscopy. Genome Res. 2011 Jun; 21(6):898-907. Shi W, Punta M, Bohon J, Sauder JM, D'Mello R, Sullivan M, Toomey J, Abel D, Lippi M, Passerini A, Frasconi P, Burley SK, Rost B, Chance MR. PMID: 21482623.
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    72. Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex. Proteins. 2011 May; 79(5):1672-7. Sampathkumar P, Gheyi T, Miller SA, Bain KT, Dickey M, Bonanno JB, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Rout MP, Sali A, Sauder JM, Burley SK. PMID: 21365675.
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    73. Structural basis for a ribofuranosyl binding protein: insights into the furanose specific transport. Proteins. 2011 Apr; 79(4):1352-7. Bagaria A, Kumaran D, Burley SK, Swaminathan S. PMID: 21387413.
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    74. Catalytic mechanism and three-dimensional structure of adenine deaminase. Biochemistry. 2011 Mar 22; 50(11):1917-27. Kamat SS, Bagaria A, Kumaran D, Holmes-Hampton GP, Fan H, Sali A, Sauder JM, Burley SK, Lindahl PA, Swaminathan S, Raushel FM. PMID: 21247091.
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    75. Enzymatic deamination of the epigenetic base N-6-methyladenine. J Am Chem Soc. 2011 Feb 23; 133(7):2080-3. Kamat SS, Fan H, Sauder JM, Burley SK, Shoichet BK, Sali A, Raushel FM. PMID: 21275375.
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    76. Structural and functional studies of fatty acyl adenylate ligases from E. coli and L. pneumophila. J Mol Biol. 2011 Feb 18; 406(2):313-24. Zhang Z, Zhou R, Sauder JM, Tonge PJ, Burley SK, Swaminathan S. PMID: 21185305.
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    77. ModBase, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res. 2011 Jan; 39(Database issue):D465-74. Pieper U, Webb BM, Barkan DT, Schneidman-Duhovny D, Schlessinger A, Braberg H, Yang Z, Meng EC, Pettersen EF, Huang CC, Datta RS, Sampathkumar P, Madhusudhan MS, Sjölander K, Ferrin TE, Burley SK, Sali A. PMID: 21097780.
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    78. Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR. Structure. 2010 Nov 10; 18(11):1512-21. Wisedchaisri G, Dranow DM, Lie TJ, Bonanno JB, Patskovsky Y, Ozyurt SA, Sauder JM, Almo SC, Wasserman SR, Burley SK, Leigh JA, Gonen T. PMID: 21070950.
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    79. Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution. Proteins. 2010 Nov 01; 78(14):3056-62. Sampathkumar P, Lu F, Zhao X, Li Z, Gilmore J, Bain K, Rutter ME, Gheyi T, Schwinn KD, Bonanno JB, Pieper U, Fajardo JE, Fiser A, Almo SC, Swaminathan S, Chance MR, Baker D, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Sali A, Sauder JM, Burley SK. PMID: 20737437.
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    80. Structural bases of PAS domain-regulated kinase (PASK) activation in the absence of activation loop phosphorylation. J Biol Chem. 2010 Dec 24; 285(52):41034-43. Kikani CK, Antonysamy SA, Bonanno JB, Romero R, Zhang FF, Russell M, Gheyi T, Iizuka M, Emtage S, Sauder JM, Turk BE, Burley SK, Rutter J. PMID: 20943661.
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    81. Functional identification and structure determination of two novel prolidases from cog1228 in the amidohydrolase superfamily . Biochemistry. 2010 Aug 10; 49(31):6791-803. Xiang DF, Patskovsky Y, Xu C, Fedorov AA, Fedorov EV, Sisco AA, Sauder JM, Burley SK, Almo SC, Raushel FM. PMID: 20604542.
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    82. Mass spectrometry guided in situ proteolysis to obtain crystals for X-ray structure determination. J Am Soc Mass Spectrom. 2010 Oct; 21(10):1795-801. Gheyi T, Rodgers L, Romero R, Sauder JM, Burley SK. PMID: 20685133.
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    83. Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145. Proteins. 2010 Jun; 78(8):1992-8. Sampathkumar P, Ozyurt SA, Do J, Bain KT, Dickey M, Rodgers LA, Gheyi T, Sali A, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Rout MP, Sauder JM, Burley SK. PMID: 20310066.
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    84. Discovery and structure determination of the orphan enzyme isoxanthopterin deaminase . Biochemistry. 2010 May 25; 49(20):4374-82. Hall RS, Agarwal R, Hitchcock D, Sauder JM, Burley SK, Swaminathan S, Raushel FM. PMID: 20415463.
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    85. The hunt for 8-oxoguanine deaminase. J Am Chem Soc. 2010 Feb 17; 132(6):1762-3. Hall RS, Fedorov AA, Marti-Arbona R, Fedorov EV, Kolb P, Sauder JM, Burley SK, Shoichet BK, Almo SC, Raushel FM. PMID: 20088583.
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    86. Structures of PHR domains from Mus musculus Phr1 (Mycbp2) explain the loss-of-function mutation (Gly1092-->Glu) of the C. elegans ortholog RPM-1. J Mol Biol. 2010 Apr 09; 397(4):883-92. Sampathkumar P, Ozyurt SA, Miller SA, Bain KT, Rutter ME, Gheyi T, Abrams B, Wang Y, Atwell S, Luz JG, Thompson DA, Wasserman SR, Emtage JS, Park EC, Rongo C, Jin Y, Klemke RL, Sauder JM, Burley SK. PMID: 20156452.
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    87. Structural studies on cytosolic domain of magnesium transporter MgtE from Enterococcus faecalis. Proteins. 2010 Feb 01; 78(2):487-91. Ragumani S, Sauder JM, Burley SK, Swaminathan S. PMID: 19787770.
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    88. Safeguarding the integrity of protein archive. Nature. 2010 Jan 28; 463(7280):425. Berman HM, Kleywegt GJ, Nakamura H, Markley JL, Burley SK. PMID: 20110969.
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    89. Structure of YqgQ protein from Bacillus subtilis, a conserved hypothetical protein. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jan 01; 66(Pt 1):8-11. Lakshminarasimhan D, Eswaramoorthy S, Burley SK, Swaminathan S. PMID: 20057058.
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    90. Computation-facilitated assignment of the function in the enolase superfamily: a regiochemically distinct galactarate dehydratase from Oceanobacillus iheyensis . Biochemistry. 2009 Dec 08; 48(48):11546-58. Rakus JF, Kalyanaraman C, Fedorov AA, Fedorov EV, Mills-Groninger FP, Toro R, Bonanno J, Bain K, Sauder JM, Burley SK, Almo SC, Jacobson MP, Gerlt JA. PMID: 19883118.
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    91. SGX523 is an exquisitely selective, ATP-competitive inhibitor of the MET receptor tyrosine kinase with antitumor activity in vivo. Mol Cancer Ther. 2009 Dec; 8(12):3181-90. Buchanan SG, Hendle J, Lee PS, Smith CR, Bounaud PY, Jessen KA, Tang CM, Huser NH, Felce JD, Froning KJ, Peterman MC, Aubol BE, Gessert SF, Sauder JM, Schwinn KD, Russell M, Rooney IA, Adams J, Leon BC, Do TH, Blaney JM, Sprengeler PA, Thompson DA, Smyth L, Pelletier LA, Atwell S, Holme K, Wasserman SR, Emtage S, Burley SK, Reich SH. PMID: 19934279.
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    92. Periplasmic domains of Pseudomonas aeruginosa PilN and PilO form a stable heterodimeric complex. J Mol Biol. 2009 Nov 20; 394(1):143-59. Sampaleanu LM, Bonanno JB, Ayers M, Koo J, Tammam S, Burley SK, Almo SC, Burrows LL, Howell PL. PMID: 19857646.
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    93. Blocking UV-induced eIF2alpha phosphorylation with small molecule inhibitors of GCN2. Chem Biol Drug Des. 2009 Jul; 74(1):57-67. Robert F, Williams C, Yan Y, Donohue E, Cencic R, Burley SK, Pelletier J. PMID: 19519745.
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    94. Functional annotation of two new carboxypeptidases from the amidohydrolase superfamily of enzymes. Biochemistry. 2009 Jun 02; 48(21):4567-76. Xiang DF, Xu C, Kumaran D, Brown AC, Sauder JM, Burley SK, Swaminathan S, Raushel FM. PMID: 19358546.
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    95. Functional identification of incorrectly annotated prolidases from the amidohydrolase superfamily of enzymes. Biochemistry. 2009 May 05; 48(17):3730-42. Xiang DF, Patskovsky Y, Xu C, Meyer AJ, Sauder JM, Burley SK, Almo SC, Raushel FM. PMID: 19281183.
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    96. Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin. Proc Natl Acad Sci U S A. 2009 Mar 17; 106(11):4154-9. Leiman PG, Basler M, Ramagopal UA, Bonanno JB, Sauder JM, Pukatzki S, Burley SK, Almo SC, Mekalanos JJ. PMID: 19251641.
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    97. Evolution of enzymatic activities in the enolase superfamily: stereochemically distinct mechanisms in two families of cis,cis-muconate lactonizing enzymes. Biochemistry. 2009 Feb 24; 48(7):1445-53. Sakai A, Fedorov AA, Fedorov EV, Schnoes AM, Glasner ME, Brown S, Rutter ME, Bain K, Chang S, Gheyi T, Sauder JM, Burley SK, Babbitt PC, Almo SC, Gerlt JA. PMID: 19220063.
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    98. Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies. J Struct Funct Genomics. 2009 Apr; 10(2):107-25. Pieper U, Chiang R, Seffernick JJ, Brown SD, Glasner ME, Kelly L, Eswar N, Sauder JM, Bonanno JB, Swaminathan S, Burley SK, Zheng X, Chance MR, Almo SC, Gerlt JA, Raushel FM, Jacobson MP, Babbitt PC, Sali A. PMID: 19219566.
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    99. Outcome of a workshop on applications of protein models in biomedical research. Structure. 2009 Feb 13; 17(2):151-9. Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL, Fidelis K, Fiser A, Godzik A, Huang YJ, Humblet C, Jacobson MP, Joachimiak A, Krystek SR, Kortemme T, Kryshtafovych A, Montelione GT, Moult J, Murray D, Sanchez R, Sosnick TR, Standley DM, Stouch T, Vajda S, Vasquez M, Westbrook JD, Wilson IA. PMID: 19217386.
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    100. UPF201 archaeal specific family members reveal structural similarity to RNA-binding proteins but low likelihood for RNA-binding function. PLoS One. 2008; 3(12):e3903. Rao KN, Burley SK, Swaminathan S. PMID: 19079550.
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    101. Crystal structure of a putative lysostaphin peptidase from Vibrio cholerae. Proteins. 2008 Aug 15; 72(3):1096-103. Ragumani S, Kumaran D, Burley SK, Swaminathan S. PMID: 18498110.
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    102. X-ray crystal structure of the B component of Hemolysin BL from Bacillus cereus. Proteins. 2008 May 01; 71(2):534-40. Madegowda M, Eswaramoorthy S, Burley SK, Swaminathan S. PMID: 18175317.
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    103. A novel mode of dimerization via formation of a glutamate anhydride crosslink in a protein crystal structure. Proteins. 2008 May 01; 71(2):1038-41. Agarwal R, Burley SK, Swaminathan S. PMID: 18247349.
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    104. A common catalytic mechanism for proteins of the HutI family. Biochemistry. 2008 May 20; 47(20):5608-15. Tyagi R, Eswaramoorthy S, Burley SK, Raushel FM, Swaminathan S. PMID: 18442260.
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    105. SGX393 inhibits the CML mutant Bcr-AblT315I and preempts in vitro resistance when combined with nilotinib or dasatinib. Proc Natl Acad Sci U S A. 2008 Apr 08; 105(14):5507-12. O'Hare T, Eide CA, Tyner JW, Corbin AS, Wong MJ, Buchanan S, Holme K, Jessen KA, Tang C, Lewis HA, Romero RD, Burley SK, Deininger MW. PMID: 18367669.
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    106. Crystal structure of a conserved protein of unknown function (MJ1651) from Methanococcus jannaschii. Proteins. 2008 Feb 01; 70(2):572-7. Rao KN, Burley SK, Swaminathan S. PMID: 17910070.
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    107. Structure of human dual specificity protein phosphatase 23, VHZ, enzyme-substrate/product complex. J Biol Chem. 2008 Apr 04; 283(14):8946-53. Agarwal R, Burley SK, Swaminathan S. PMID: 18245086.
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    108. Protein production and purification. Nat Methods. 2008 Feb; 5(2):135-46. Gräslund S, Nordlund P, Weigelt J, Hallberg BM, Bray J, Gileadi O, Knapp S, Oppermann U, Arrowsmith C, Hui R, Ming J, dhe-Paganon S, Park HW, Savchenko A, Yee A, Edwards A, Vincentelli R, Cambillau C, Kim R, Kim SH, Rao Z, Shi Y, Terwilliger TC, Kim CY, Hung LW, Waldo GS, Peleg Y, Albeck S, Unger T, Dym O, Prilusky J, Sussman JL, Stevens RC, Lesley SA, Wilson IA, Joachimiak A, Collart F, Dementieva I, Donnelly MI, Eschenfeldt WH, Kim Y, Stols L, Wu R, Zhou M, Burley SK, Emtage JS, Sauder JM, Thompson D, Bain K, Luz J, Gheyi T, Zhang F, Atwell S, Almo SC, Bonanno JB, Fiser A, Swaminathan S, Studier FW, Chance MR, Sali A, Acton TB, Xiao R, Zhao L, Ma LC, Hunt JF, Tong L, Cunningham K, Inouye M, Anderson S, Janjua H, Shastry R, Ho CK, Wang D, Wang H, Jiang M, Montelione GT, Stuart DI, Owens RJ, Daenke S, Schütz A, Heinemann U, Yokoyama S, Büssow K, Gunsalus KC. PMID: 18235434.
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    109. High throughput protein production and crystallization at NYSGXRC. Methods Mol Biol. 2008; 426:561-75. Sauder MJ, Rutter ME, Bain K, Rooney I, Gheyi T, Atwell S, Thompson DA, Emtage S, Burley SK. PMID: 18542890.
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    110. Contributions to the NIH-NIGMS Protein Structure Initiative from the PSI Production Centers. Structure. 2008 Jan; 16(1):5-11. Burley SK, Joachimiak A, Montelione GT, Wilson IA. PMID: 18184575.
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    111. Structural genomics of protein phosphatases. J Struct Funct Genomics. 2007 Sep; 8(2-3):121-40. Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK. PMID: 18058037.
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    112. X-ray structure of imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution. Proteins. 2007 Nov 15; 69(3):652-8. Tyagi R, Kumaran D, Burley SK, Swaminathan S. PMID: 17640072.
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    113. X-ray structures of two proteins belonging to Pfam DUF178 revealed unexpected structural similarity to the DUF191 Pfam family. BMC Struct Biol. 2007 Oct 01; 7:62. Tyagi R, Burley SK, Swaminathan S. PMID: 17908300.
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    114. Structural analysis of a ternary complex of allantoate amidohydrolase from Escherichia coli reveals its mechanics. J Mol Biol. 2007 Apr 27; 368(2):450-63. Agarwal R, Burley SK, Swaminathan S. PMID: 17362992.
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    115. Structural basis for activation of the therapeutic L-nucleoside analogs 3TC and troxacitabine by human deoxycytidine kinase. Nucleic Acids Res. 2007; 35(1):186-92. Sabini E, Hazra S, Konrad M, Burley SK, Lavie A. PMID: 17158155.
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    116. Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens by SAD with a large asymmetric unit. Proteins. 2006 Nov 01; 65(2):514-8. Rao KN, Bonanno JB, Burley SK, Swaminathan S. PMID: 16909422.
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    117. Crystal structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two "proton wires". Proteins. 2006 Sep 01; 64(4):851-62. Kumaran D, Bonanno JB, Burley SK, Swaminathan S. PMID: 16838328.
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    118. Outcome of a workshop on archiving structural models of biological macromolecules. Structure. 2006 Aug; 14(8):1211-7. Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH, Dunbrack RL, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, Heymann B, Jones D, Markley JL, Moult J, Montelione GT, Orengo C, Rossmann MG, Rost B, Saibil H, Schwede T, Standley DM, Westbrook JD. PMID: 16955948.
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    119. Crystal structure of trehalose-6-phosphate phosphatase-related protein: biochemical and biological implications. Protein Sci. 2006 Jul; 15(7):1735-44. Rao KN, Kumaran D, Seetharaman J, Bonanno JB, Burley SK, Swaminathan S. PMID: 16815921.
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    120. Mechanism of action of a flavin-containing monooxygenase. Proc Natl Acad Sci U S A. 2006 Jun 27; 103(26):9832-7. Eswaramoorthy S, Bonanno JB, Burley SK, Swaminathan S. PMID: 16777962.
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    121. Crystal structures of two putative phosphoheptose isomerases. Proteins. 2006 Jun 01; 63(4):1092-6. Seetharaman J, Rajashankar KR, Solorzano V, Kniewel R, Lima CD, Bonanno JB, Burley SK, Swaminathan S. PMID: 16477602.
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    122. Crystal structure of a putative HTH-type transcriptional regulator yxaF from Bacillus subtilis. Proteins. 2006 Jun 01; 63(4):1087-91. Seetharaman J, Kumaran D, Bonanno JB, Burley SK, Swaminathan S. PMID: 16475182.
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    123. Two structurally atypical HEAT domains in the C-terminal portion of human eIF4G support binding to eIF4A and Mnk1. Structure. 2006 May; 14(5):913-23. Bellsolell L, Cho-Park PF, Poulin F, Sonenberg N, Burley SK. PMID: 16698552.
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    124. Cancer and kinases: reports from the front line. Genome Biol. 2006; 7(4):314. Burley SK. PMID: 16677415.
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    125. Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal. Acta Crystallogr D Biol Crystallogr. 2006 Apr; 62(Pt 4):383-91. Agarwal R, Bonanno JB, Burley SK, Swaminathan S. PMID: 16552139.
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    126. Structural aspects of interactions within the Myc/Max/Mad network. Curr Top Microbiol Immunol. 2006; 302:123-43. Nair SK, Burley SK. PMID: 16620027.
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    127. Deposit3D: a tool for automating structure depositions to the Protein Data Bank. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Sep 01; 61(Pt 9):818-20. Badger J, Hendle J, Burley SK, Kissinger CR. PMID: 16511167.
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    128. Meeting the challenges of drug discovery: a multidisciplinary re-evaluation of current practices. Keystone Symposium 'Meeting the Challenges of Drug Discovery', Vancouver, Canada, 15-19 January 2005. Genome Biol. 2005; 6(7):330. Burley SK, Park F. PMID: 15998459.
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    129. Structural basis for autoinhibition and mutational activation of eukaryotic initiation factor 2alpha protein kinase GCN2. J Biol Chem. 2005 Aug 12; 280(32):29289-99. Padyana AK, Qiu H, Roll-Mecak A, Hinnebusch AG, Burley SK. PMID: 15964839.
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    130. Structure of the pseudouridine synthase RsuA from Haemophilus influenzae. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Apr 01; 61(Pt 4):350-4. Matte A, Louie GV, Sivaraman J, Cygler M, Burley SK. PMID: 16511038.
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    131. High-throughput limited proteolysis/mass spectrometry for protein domain elucidation. J Struct Funct Genomics. 2005; 6(2-3):129-34. Gao X, Bain K, Bonanno JB, Buchanan M, Henderson D, Lorimer D, Marsh C, Reynes JA, Sauder JM, Schwinn K, Thai C, Burley SK. PMID: 16211509.
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    132. X-ray structure of a Rex-family repressor/NADH complex insights into the mechanism of redox sensing. Structure. 2005 Jan; 13(1):43-54. Sickmier EA, Brekasis D, Paranawithana S, Bonanno JB, Paget MS, Burley SK, Kielkopf CL. PMID: 15642260.
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    133. New York-Structural GenomiX Research Consortium (NYSGXRC): a large scale center for the protein structure initiative. J Struct Funct Genomics. 2005; 6(2-3):225-32. Bonanno JB, Almo SC, Bresnick A, Chance MR, Fiser A, Swaminathan S, Jiang J, Studier FW, Shapiro L, Lima CD, Gaasterland TM, Sali A, Bain K, Feil I, Gao X, Lorimer D, Ramos A, Sauder JM, Wasserman SR, Emtage S, D'Amico KL, Burley SK. PMID: 16211523.
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    134. She2p is a novel RNA binding protein with a basic helical hairpin motif. Cell. 2004 Nov 12; 119(4):491-502. Niessing D, Hüttelmaier S, Zenklusen D, Singer RH, Burley SK. PMID: 15537539.
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    135. A novel mode of Gleevec binding is revealed by the structure of spleen tyrosine kinase. J Biol Chem. 2004 Dec 31; 279(53):55827-32. Atwell S, Adams JM, Badger J, Buchanan MD, Feil IK, Froning KJ, Gao X, Hendle J, Keegan K, Leon BC, Müller-Dieckmann HJ, Nienaber VL, Noland BW, Post K, Rajashankar KR, Ramos A, Russell M, Burley SK, Buchanan SG. PMID: 15507431.
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    136. X-ray structure of translation initiation factor eIF2gamma: implications for tRNA and eIF2alpha binding. J Biol Chem. 2004 Mar 12; 279(11):10634-42. Roll-Mecak A, Alone P, Cao C, Dever TE, Burley SK. PMID: 14688270.
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    137. Structure of nucleotide-binding domain 1 of the cystic fibrosis transmembrane conductance regulator. EMBO J. 2004 Jan 28; 23(2):282-93. Lewis HA, Buchanan SG, Burley SK, Conners K, Dickey M, Dorwart M, Fowler R, Gao X, Guggino WB, Hendrickson WA, Hunt JF, Kearins MC, Lorimer D, Maloney PC, Post KW, Rajashankar KR, Rutter ME, Sauder JM, Shriver S, Thibodeau PH, Thomas PJ, Zhang M, Zhao X, Emtage S. PMID: 14685259.
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    138. Structural bases for CRMP function in plexin-dependent semaphorin3A signaling. EMBO J. 2004 Jan 14; 23(1):9-22. Deo RC, Schmidt EF, Elhabazi A, Togashi H, Burley SK, Strittmatter SM. PMID: 14685275.
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    139. Crystal structure of shikimate 5-dehydrogenase (SDH) bound to NADP: insights into function and evolution. Structure. 2003 Aug; 11(8):1005-13. Padyana AK, Burley SK. PMID: 12906831.
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    140. Crystal structure of the MazE/MazF complex: molecular bases of antidote-toxin recognition. Mol Cell. 2003 Apr; 11(4):875-84. Kamada K, Hanaoka F, Burley SK. PMID: 12718874.
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    141. A modular cross-linking approach for exploring protein interactions. J Am Chem Soc. 2003 Mar 05; 125(9):2416-25. Trester-Zedlitz M, Kamada K, Burley SK, Fenyö D, Chait BT, Muir TW. PMID: 12603129.
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    142. Molecular mechanism of recruitment of TFIIF- associating RNA polymerase C-terminal domain phosphatase (FCP1) by transcription factor IIF. Proc Natl Acad Sci U S A. 2003 Mar 04; 100(5):2296-9. Kamada K, Roeder RG, Burley SK. PMID: 12591941.
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    143. X-ray structures of Myc-Max and Mad-Max recognizing DNA. Molecular bases of regulation by proto-oncogenic transcription factors. Cell. 2003 Jan 24; 112(2):193-205. Nair SK, Burley SK. PMID: 12553908.
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    144. Phosphorylation of eIF4E attenuates its interaction with mRNA 5' cap analogs by electrostatic repulsion: intein-mediated protein ligation strategy to obtain phosphorylated protein. RNA. 2003 Jan; 9(1):52-61. Zuberek J, Wyslouch-Cieszynska A, Niedzwiecka A, Dadlez M, Stepinski J, Augustyniak W, Gingras AC, Zhang Z, Burley SK, Sonenberg N, Stolarski R, Darzynkiewicz E. PMID: 12554876.
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    145. Structural genomics. Methods Biochem Anal. 2003; 44:591-612. Burley SK, Bonanno JB. PMID: 12647406.
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    146. X-ray structure of an M. jannaschii DNA-binding protein: implications for antibiotic resistance in S. aureus. Proteins. 2003 Jan 01; 50(1):170-3. Ray SS, Bonanno JB, Chen H, de Lencastre H, Wu S, Tomasz A, Burley SK. PMID: 12471609.
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    147. Uncoupling of initiation factor eIF5B/IF2 GTPase and translational activities by mutations that lower ribosome affinity. Cell. 2002 Dec 27; 111(7):1015-25. Shin BS, Maag D, Roll-Mecak A, Arefin MS, Burley SK, Lorsch JR, Dever TE. PMID: 12507428.
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    148. The kinetic mechanism of phosphomevalonate kinase. J Biol Chem. 2003 Feb 14; 278(7):4510-5. Pilloff D, Dabovic K, Romanowski MJ, Bonanno JB, Doherty M, Burley SK, Leyh TS. PMID: 12424232.
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    149. Cocrystal structures of diaminopimelate decarboxylase: mechanism, evolution, and inhibition of an antibiotic resistance accessory factor. Structure. 2002 Nov; 10(11):1499-508. Ray SS, Bonanno JB, Rajashankar KR, Pinho MG, He G, De Lencastre H, Tomasz A, Burley SK. PMID: 12429091.
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    150. X-ray structures of threonine aldolase complexes: structural basis of substrate recognition. Biochemistry. 2002 Oct 01; 41(39):11711-20. Kielkopf CL, Burley SK. PMID: 12269813.
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    151. X-ray structure of Saccharomyces cerevisiae homologous mitochondrial matrix factor 1 (Hmf1). Proteins. 2002 Aug 01; 48(2):431-6. Deaconescu AM, Roll-Mecak A, Bonanno JB, Gerchman SE, Kycia H, Studier FW, Burley SK. PMID: 12112709.
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    152. Biophysical studies of eIF4E cap-binding protein: recognition of mRNA 5' cap structure and synthetic fragments of eIF4G and 4E-BP1 proteins. J Mol Biol. 2002 Jun 07; 319(3):615-35. Niedzwiecka A, Marcotrigiano J, Stepinski J, Jankowska-Anyszka M, Wyslouch-Cieszynska A, Dadlez M, Gingras AC, Mak P, Darzynkiewicz E, Sonenberg N, Burley SK, Stolarski R. PMID: 12054859.
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    153. Crystal structure of the Escherichia coli shikimate kinase I (AroK) that confers sensitivity to mecillinam. Proteins. 2002 Jun 01; 47(4):558-62. Romanowski MJ, Burley SK. PMID: 12001235.
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    154. Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold. Proteins. 2002 Jun 01; 47(4):563-7. Romanowski MJ, Bonanno JB, Burley SK. PMID: 12001236.
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    155. Crystal structure of the Streptococcus pneumoniae phosphomevalonate kinase, a member of the GHMP kinase superfamily. Proteins. 2002 Jun 01; 47(4):568-71. Romanowski MJ, Bonanno JB, Burley SK. PMID: 12001237.
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    156. Structural genomics of proteins from conserved biochemical pathways and processes. Curr Opin Struct Biol. 2002 Jun; 12(3):383-91. Burley SK, Bonanno JB. PMID: 12127459.
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    157. Recognition of eIF4G by rotavirus NSP3 reveals a basis for mRNA circularization. Mol Cell. 2002 Jun; 9(6):1273-83. Groft CM, Burley SK. PMID: 12086624.
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    158. Crystal structure of the Escherichia coli SbmC protein that protects cells from the DNA replication inhibitor microcin B17. Proteins. 2002 May 15; 47(3):403-7. Romanowski MJ, Gibney SA, Burley SK. PMID: 11948793.
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    159. The cholesterol-regulated StarD4 gene encodes a StAR-related lipid transfer protein with two closely related homologues, StarD5 and StarD6. Proc Natl Acad Sci U S A. 2002 May 14; 99(10):6943-8. Soccio RE, Adams RM, Romanowski MJ, Sehayek E, Burley SK, Breslow JL. PMID: 12011452.
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    160. Crystal structure of the Mus musculus cholesterol-regulated START protein 4 (StarD4) containing a StAR-related lipid transfer domain. Proc Natl Acad Sci U S A. 2002 May 14; 99(10):6949-54. Romanowski MJ, Soccio RE, Breslow JL, Burley SK. PMID: 12011453.
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    161. Structuring the universe of proteins. Annu Rev Genomics Hum Genet. 2002; 3:243-62. Burley SK, Bonanno JB. PMID: 12194989.
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    162. Transcription factor complexes. Curr Opin Struct Biol. 2002 Apr; 12(2):225-30. Burley SK, Kamada K. PMID: 11959501.
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    163. Structural genomics: a pipeline for providing structures for the biologist. Protein Sci. 2002 Apr; 11(4):723-38. Chance MR, Bresnick AR, Burley SK, Jiang JS, Lima CD, Sali A, Almo SC, Bonanno JB, Buglino JA, Boulton S, Chen H, Eswar N, He G, Huang R, Ilyin V, McMahan L, Pieper U, Ray S, Vidal M, Wang LK. PMID: 11910018.
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    164. X-ray crystallographic studies of serotonin N-acetyltransferase catalysis and inhibition. J Mol Biol. 2002 Mar 22; 317(2):215-24. Wolf E, De Angelis J, Khalil EM, Cole PA, Burley SK. PMID: 11902838.
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    165. Investigation of the roles of catalytic residues in serotonin N-acetyltransferase. J Biol Chem. 2002 May 17; 277(20):18118-26. Scheibner KA, De Angelis J, Burley SK, Cole PA. PMID: 11884405.
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    166. Recognition of the rotavirus mRNA 3' consensus by an asymmetric NSP3 homodimer. Cell. 2002 Jan 11; 108(1):71-81. Deo RC, Groft CM, Rajashankar KR, Burley SK. PMID: 11792322.
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    167. Structural biology of eIF4F: mRNA recognition and preparation in eukaryotic translation initiation. Adv Protein Chem. 2002; 61:269-97. Marcotrigiano J, Burley SK. PMID: 12461826.
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    168. Engaging the ribosome: universal IFs of translation. Trends Biochem Sci. 2001 Dec; 26(12):705-9. Roll-Mecak A, Shin BS, Dever TE, Burley SK. PMID: 11738593.
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    169. Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis. Proc Natl Acad Sci U S A. 2001 Nov 06; 98(23):12896-901. Bonanno JB, Edo C, Eswar N, Pieper U, Romanowski MJ, Ilyin V, Gerchman SE, Kycia H, Studier FW, Sali A, Burley SK. PMID: 11698677.
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    170. Hierarchical phosphorylation of the translation inhibitor 4E-BP1. Genes Dev. 2001 Nov 01; 15(21):2852-64. Gingras AC, Raught B, Gygi SP, Niedzwiecka A, Miron M, Burley SK, Polakiewicz RD, Wyslouch-Cieszynska A, Aebersold R, Sonenberg N. PMID: 11691836.
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    171. A standard reference frame for the description of nucleic acid base-pair geometry. J Mol Biol. 2001 Oct 12; 313(1):229-37. Olson WK, Bansal M, Burley SK, Dickerson RE, Gerstein M, Harvey SC, Heinemann U, Lu XJ, Neidle S, Shakked Z, Sklenar H, Suzuki M, Tung CS, Westhof E, Wolberger C, Berman HM. PMID: 11601858.
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    172. A novel peptide recognition mode revealed by the X-ray structure of a core U2AF35/U2AF65 heterodimer. Cell. 2001 Sep 07; 106(5):595-605. Kielkopf CL, Rodionova NA, Green MR, Burley SK. PMID: 11551507.
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    173. Crystal structure of negative cofactor 2 recognizing the TBP-DNA transcription complex. Cell. 2001 Jul 13; 106(1):71-81. Kamada K, Shu F, Chen H, Malik S, Stelzer G, Roeder RG, Meisterernst M, Burley SK. PMID: 11461703.
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    174. X-ray structure of the human hyperplastic discs protein: an ortholog of the C-terminal domain of poly(A)-binding protein. Proc Natl Acad Sci U S A. 2001 Apr 10; 98(8):4414-9. Deo RC, Sonenberg N, Burley SK. PMID: 11287654.
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    175. Crystal structure of the C-terminal domain of the RAP74 subunit of human transcription factor IIF. Proc Natl Acad Sci U S A. 2001 Mar 13; 98(6):3115-20. Kamada K, De Angelis J, Roeder RG, Burley SK. PMID: 11248041.
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    176. Thermodynamic analysis of the interaction between YY1 and the AAV P5 promoter initiator element. Chem Biol. 2001 Feb; 8(2):179-87. Houbaviy HB, Burley SK. PMID: 11251291.
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    177. Translational repression by a novel partner of human poly(A) binding protein, Paip2. Mol Cell. 2001 Jan; 7(1):205-16. Khaleghpour K, Svitkin YV, Craig AW, DeMaria CT, Deo RC, Burley SK, Sonenberg N. PMID: 11172725.
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    178. Universal translation initiation factor IF2/eIF5B. Cold Spring Harb Symp Quant Biol. 2001; 66:417-24. Dever TE, Roll-Mecak A, Choi SK, Lee JH, Cao C, Shin BS, Burley SK. PMID: 12762044.
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    179. A conserved HEAT domain within eIF4G directs assembly of the translation initiation machinery. Mol Cell. 2001 Jan; 7(1):193-203. Marcotrigiano J, Lomakin IB, Sonenberg N, Pestova TV, Hellen CU, Burley SK. PMID: 11172724.
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    180. Crystal structures of ribosome anti-association factor IF6. Nat Struct Biol. 2000 Dec; 7(12):1156-64. Groft CM, Beckmann R, Sali A, Burley SK. PMID: 11101899.
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    181. X-Ray structures of the universal translation initiation factor IF2/eIF5B: conformational changes on GDP and GTP binding. Cell. 2000 Nov 22; 103(5):781-92. Roll-Mecak A, Cao C, Dever TE, Burley SK. PMID: 11114334.
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    182. An overview of structural genomics. Nat Struct Biol. 2000 Nov; 7 Suppl:932-4. Burley SK. PMID: 11103991.
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    183. Physical and functional interaction between the eukaryotic orthologs of prokaryotic translation initiation factors IF1 and IF2. Mol Cell Biol. 2000 Oct; 20(19):7183-91. Choi SK, Olsen DS, Roll-Mecak A, Martung A, Remo KL, Burley SK, Hinnebusch AG, Dever TE. PMID: 10982835.
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    184. The tetranucleotide UCAY directs the specific recognition of RNA by the Nova K-homology 3 domain. Proc Natl Acad Sci U S A. 2000 May 23; 97(11):5740-5. Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. PMID: 10811881.
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    185. Recognizing DNA in the library. Nature. 2000 Apr 13; 404(6779):715, 717-8. Nair SK, Burley SK. PMID: 10783871.
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    186. Structure of the winged-helix protein hRFX1 reveals a new mode of DNA binding. Nature. 2000 Feb 24; 403(6772):916-21. Gajiwala KS, Chen H, Cornille F, Roques BP, Reith W, Mach B, Burley SK. PMID: 10706293.
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    187. Sequence-specific RNA binding by a Nova KH domain: implications for paraneoplastic disease and the fragile X syndrome. Cell. 2000 Feb 04; 100(3):323-32. Lewis HA, Musunuru K, Jensen KB, Edo C, Chen H, Darnell RB, Burley SK. PMID: 10676814.
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    188. Winged helix proteins. Curr Opin Struct Biol. 2000 Feb; 10(1):110-6. Gajiwala KS, Burley SK. PMID: 10679470.
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    189. Protein-nucleic acid interactions. Curr Opin Struct Biol. 2000 Feb; 10(1):75-7. Rhodes D, Burley SK. PMID: 10766517.
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    190. HDEA, a periplasmic protein that supports acid resistance in pathogenic enteric bacteria. J Mol Biol. 2000 Jan 21; 295(3):605-12. Gajiwala KS, Burley SK. PMID: 10623550.
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    191. TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. Genes Dev. 1999 Dec 15; 13(24):3217-30. Patikoglou GA, Kim JL, Sun L, Yang SH, Kodadek T, Burley SK. PMID: 10617571.
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    192. Structural genomics: beyond the human genome project. Nat Genet. 1999 Oct; 23(2):151-7. Burley SK, Almo SC, Bonanno JB, Capel M, Chance MR, Gaasterland T, Lin D, Sali A, Studier FW, Swaminathan S. PMID: 10508510.
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    193. Recognition of polyadenylate RNA by the poly(A)-binding protein. Cell. 1999 Sep 17; 98(6):835-45. Deo RC, Bonanno JB, Sonenberg N, Burley SK. PMID: 10499800.
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    194. Cap-dependent translation initiation in eukaryotes is regulated by a molecular mimic of eIF4G. Mol Cell. 1999 Jun; 3(6):707-16. Marcotrigiano J, Gingras AC, Sonenberg N, Burley SK. PMID: 10394359.
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    195. Universal conservation in translation initiation revealed by human and archaeal homologs of bacterial translation initiation factor IF2. Proc Natl Acad Sci U S A. 1999 Apr 13; 96(8):4342-7. Lee JH, Choi SK, Roll-Mecak A, Burley SK, Dever TE. PMID: 10200264.
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    196. Crystal structures of Nova-1 and Nova-2 K-homology RNA-binding domains. Structure. 1999 Feb 15; 7(2):191-203. Lewis HA, Chen H, Edo C, Buckanovich RJ, Yang YY, Musunuru K, Zhong R, Darnell RB, Burley SK. PMID: 10368286.
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    197. TATA box mimicry by TFIID: autoinhibition of pol II transcription. Cell. 1998 Sep 04; 94(5):551-3. Burley SK, Roeder RG. PMID: 9741619.
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    198. Crystal structure of a GCN5-related N-acetyltransferase: Serratia marcescens aminoglycoside 3-N-acetyltransferase. Cell. 1998 Aug 21; 94(4):439-49. Wolf E, Vassilev A, Makino Y, Sali A, Nakatani Y, Burley SK. PMID: 9727487.
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    199. Structure-function studies on positions 17, 18, and 21 replacement analogues of glucagon: the importance of charged residues and salt bridges in glucagon biological activity. J Med Chem. 1998 Jul 16; 41(15):2693-700. Sturm NS, Lin Y, Burley SK, Krstenansky JL, Ahn JM, Azizeh BY, Trivedi D, Hruby VJ. PMID: 9667960.
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    200. Cloning and characterization of 4EHP, a novel mammalian eIF4E-related cap-binding protein. J Biol Chem. 1998 May 22; 273(21):13104-9. Rom E, Kim HC, Gingras AC, Marcotrigiano J, Favre D, Olsen H, Burley SK, Sonenberg N. PMID: 9582349.
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    201. Co-crystal structure of sterol regulatory element binding protein 1a at 2.3 A resolution. Structure. 1998 May 15; 6(5):661-72. Párraga A, Bellsolell L, Ferré-D'Amaré AR, Burley SK. PMID: 9634703.
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    202. RNA chiropractics. Nat Struct Biol. 1998 Mar; 5(3):172-4. Sonenberg N, Burley SK, Gingras AC. PMID: 9501904.
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    203. Binding of the winged-helix transcription factor HNF3 to a linker histone site on the nucleosome. EMBO J. 1998 Jan 02; 17(1):244-54. Cirillo LA, McPherson CE, Bossard P, Stevens K, Cherian S, Shim EY, Clark KL, Burley SK, Zaret KS. PMID: 9427758.
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    204. X-ray crystallographic studies of eukaryotic transcription factors. Cold Spring Harb Symp Quant Biol. 1998; 63:33-40. Burley SK. PMID: 10384268.
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    205. Cocrystal structure of the messenger RNA 5' cap-binding protein (eIF4E) bound to 7-methyl-GDP. Cell. 1997 Jun 13; 89(6):951-61. Marcotrigiano J, Gingras AC, Sonenberg N, Burley SK. PMID: 9200613.
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    206. Architectural transcription factors: proteins that remodel DNA. Cell. 1997 Mar 21; 88(6):733-6. Werner MH, Burley SK. PMID: 9118214.
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    207. Protein-nucleic acid interactions. Curr Opin Struct Biol. 1997 Feb; 7(1):73-5. Rhodes D, Burley SK. PMID: 9032068.
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    208. Histone-like transcription factors in eukaryotes. Curr Opin Struct Biol. 1997 Feb; 7(1):94-102. Burley SK, Xie X, Clark KL, Shu F. PMID: 9032065.
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    209. RNA polymerase II transcription initiation: a structural view. Proc Natl Acad Sci U S A. 1997 Jan 07; 94(1):15-22. Nikolov DB, Burley SK. PMID: 8990153.
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    210. X-ray studies of the messenger RNA 5' cap-binding protein (eIF4E) bound to 7-methyl-GDP. Nucleic Acids Symp Ser. 1997; (36):8-11. Marcotrigiano J, Gingras AC, Sonenberg N, Burley SK. PMID: 9478191.
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    211. Eukaryotic transcription factor-DNA complexes. Annu Rev Biophys Biomol Struct. 1997; 26:289-325. Patikoglou G, Burley SK. PMID: 9241421.
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    212. [10] Dynamic light scattering in evaluating crystallizability of macromolecules. Methods Enzymol. 1997; 276:157-166. Ferré-D'Amaré AR, Burley SK. PMID: 27799091.
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    213. Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator. Proc Natl Acad Sci U S A. 1996 Nov 26; 93(24):13577-82. Houbaviy HB, Usheva A, Shenk T, Burley SK. PMID: 8942976.
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    214. The semidominant Mi(b) mutation identifies a role for the HLH domain in DNA binding in addition to its role in protein dimerization. EMBO J. 1996 Nov 15; 15(22):6280-9. Steingrímsson E, Nii A, Fisher DE, Ferré-D'Amaré AR, McCormick RJ, Russell LB, Burley SK, Ward JM, Jenkins NA, Copeland NG. PMID: 8947051.
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    215. Radical mutations reveal TATA-box binding protein surfaces required for activated transcription in vivo. Genes Dev. 1996 Oct 01; 10(19):2491-504. Bryant GO, Martel LS, Burley SK, Berk AJ. PMID: 8843200.
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    216. Crystal structure of a human TATA box-binding protein/TATA element complex. Proc Natl Acad Sci U S A. 1996 May 14; 93(10):4862-7. Nikolov DB, Chen H, Halay ED, Hoffman A, Roeder RG, Burley SK. PMID: 8643494.
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    217. Picking up the TAB. Nature. 1996 May 09; 381(6578):112-3. Burley SK. PMID: 8610004.
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    218. X-ray crystallographic studies of eukaryotic transcription initiation factors. Philos Trans R Soc Lond B Biol Sci. 1996 Apr 29; 351(1339):483-9. Burley SK. PMID: 8735270.
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    219. Structural similarity between TAFs and the heterotetrameric core of the histone octamer. Nature. 1996 Mar 28; 380(6572):316-22. Xie X, Kokubo T, Cohen SL, Mirza UA, Hoffmann A, Chait BT, Roeder RG, Nakatani Y, Burley SK. PMID: 8598927.
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    220. A histone octamer-like structure within TFIID. Nature. 1996 Mar 28; 380(6572):356-9. Hoffmann A, Chiang CM, Oelgeschläger T, Xie X, Burley SK, Nakatani Y, Roeder RG. PMID: 8598932.
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    221. The TATA box binding protein. Curr Opin Struct Biol. 1996 Feb; 6(1):69-75. Burley SK. PMID: 8696975.
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    222. Biochemistry and structural biology of transcription factor IID (TFIID). Annu Rev Biochem. 1996; 65:769-99. Burley SK, Roeder RG. PMID: 8811195.
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    223. Crystal structure of a TFIIB-TBP-TATA-element ternary complex. Nature. 1995 Sep 14; 377(6545):119-28. Nikolov DB, Chen H, Halay ED, Usheva AA, Hisatake K, Lee DK, Roeder RG, Burley SK. PMID: 7675079.
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    224. Anti-cooperative biphasic equilibrium binding of transcription factor upstream stimulatory factor to its cognate DNA monitored by protein fluorescence changes. J Biol Chem. 1995 Aug 18; 270(33):19325-9. Sha M, Ferré-D'Amaré AR, Burley SK, Goss DJ. PMID: 7642609.
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    225. Weight-reducing effects of the plasma protein encoded by the obese gene. Science. 1995 Jul 28; 269(5223):543-6. Halaas JL, Gajiwala KS, Maffei M, Cohen SL, Chait BT, Rabinowitz D, Lallone RL, Burley SK, Friedman JM. PMID: 7624777.
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    226. PCD/DCoH: more than a second molecular saddle. Structure. 1995 Jun 15; 3(6):531-4. Kim JL, Burley SK. PMID: 8590013.
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    227. Probing the solution structure of the DNA-binding protein Max by a combination of proteolysis and mass spectrometry. Protein Sci. 1995 Jun; 4(6):1088-99. Cohen SL, Ferré-D'Amaré AR, Burley SK, Chait BT. PMID: 7549873.
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    228. Rel revealed: cocrystal structures of the NF-kappa B p50 homodimer. Chem Biol. 1995 Feb; 2(2):77-81. Burley SK. PMID: 9383407.
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    229. Molecular basis of mouse microphthalmia (mi) mutations helps explain their developmental and phenotypic consequences. Nat Genet. 1994 Nov; 8(3):256-63. Steingrímsson E, Moore KJ, Lamoreux ML, Ferré-D'Amaré AR, Burley SK, Zimring DC, Skow LC, Hodgkinson CA, Arnheiter H, Copeland NG. PMID: 7874168.
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    230. p53: a cellular Achilles' heel revealed. Structure. 1994 Sep 15; 2(9):789-92. Burley SK. PMID: 7812712.
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    231. 2.1 A resolution refined structure of a TATA box-binding protein (TBP). Nat Struct Biol. 1994 Sep; 1(9):621-37. Nikolov DB, Burley SK. PMID: 7634102.
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    232. 1.9 A resolution refined structure of TBP recognizing the minor groove of TATAAAAG. Nat Struct Biol. 1994 Sep; 1(9):638-53. Kim JL, Burley SK. PMID: 7634103.
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    233. Use of dynamic light scattering to assess crystallizability of macromolecules and macromolecular assemblies. Structure. 1994 May 15; 2(5):357-9. Ferré-D'Amaré AR, Burley SK. PMID: 8081751.
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    234. Structure and function of the b/HLH/Z domain of USF. EMBO J. 1994 Jan 01; 13(1):180-9. Ferré-D'Amaré AR, Pognonec P, Roeder RG, Burley SK. PMID: 8306960.
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    235. Hepatocyte nuclear factor 3/fork head or "winged helix" proteins: a family of transcription factors of diverse biologic function. Proc Natl Acad Sci U S A. 1993 Nov 15; 90(22):10421-3. Lai E, Clark KL, Burley SK, Darnell JE. PMID: 8248124.
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    236. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature. 1993 Oct 07; 365(6446):520-7. Kim JL, Nikolov DB, Burley SK. PMID: 8413605.
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    237. Co-crystal structure of the HNF-3/fork head DNA-recognition motif resembles histone H5. Nature. 1993 Jul 29; 364(6436):412-20. Clark KL, Halay ED, Lai E, Burley SK. PMID: 8332212.
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    238. Recognition by Max of its cognate DNA through a dimeric b/HLH/Z domain. Nature. 1993 May 06; 363(6424):38-45. Ferré-D'Amaré AR, Prendergast GC, Ziff EB, Burley SK. PMID: 8479534.
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    239. Re-refinement of the X-ray crystal structure of bovine lens leucine aminopeptidase complexed with bestatin. J Mol Biol. 1993 Apr 05; 230(3):722-4. Kim H, Burley SK, Lipscomb WN. PMID: 8478928.
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    240. X-ray crystallographic studies of eukaryotic transcription factors. Cold Spring Harb Symp Quant Biol. 1993; 58:123-32. Burley SK, Clark KL, Ferré-D'Amaré A, Kim JL, Nikolov DB. PMID: 7956022.
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    241. Crystal structure of TFIID TATA-box binding protein. Nature. 1992 Nov 05; 360(6399):40-6. Nikolov DB, Hu SH, Lin J, Gasch A, Hoffmann A, Horikoshi M, Chua NH, Roeder RG, Burley SK. PMID: 1436073.
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    242. Transcription factors. DNA recognition, warts and all. Nature. 1992 Oct 08; 359(6395):476. Kuriyan J, Burley SK. PMID: 1328885.
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    243. Structure determination and refinement of bovine lens leucine aminopeptidase and its complex with bestatin. J Mol Biol. 1992 Mar 05; 224(1):113-40. Burley SK, David PR, Sweet RM, Taylor A, Lipscomb WN. PMID: 1548695.
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    244. Leucine aminopeptidase: bestatin inhibition and a model for enzyme-catalyzed peptide hydrolysis. Proc Natl Acad Sci U S A. 1991 Aug 15; 88(16):6916-20. Burley SK, David PR, Lipscomb WN. PMID: 1871107.
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    245. Exploration of disorder in protein structures by X-ray restrained molecular dynamics. Proteins. 1991; 10(4):340-58. Kuriyan J, Osapay K, Burley SK, Brünger AT, Hendrickson WA, Karplus M. PMID: 1946343.
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    246. Molecular structure of leucine aminopeptidase at 2.7-A resolution. Proc Natl Acad Sci U S A. 1990 Sep; 87(17):6878-82. Burley SK, David PR, Taylor A, Lipscomb WN. PMID: 2395881.
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    247. Weakly polar interactions in proteins. Adv Protein Chem. 1988; 39:125-89. Burley SK, Petsko GA. PMID: 3072867.
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    248. Antigelling and antisickling bisphenyl oligopeptides and peptide analogues have similar structural features. Biochemistry. 1987 Aug 11; 26(16):5091-9. Burley SK, Wang AH, Votano JR, Rich A. PMID: 3663644.
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    249. Amino-aromatic interactions in proteins. FEBS Lett. 1986 Jul 28; 203(2):139-43. Burley SK, Petsko GA. PMID: 3089835.
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    250. Aromatic-aromatic interaction: a mechanism of protein structure stabilization. Science. 1985 Jul 05; 229(4708):23-8. Burley SK, Petsko GA. PMID: 3892686.
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