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Stephen Burley

TitleAdjunct Professor
InstitutionUniversity of California San Diego
DepartmentSchool of Pharmacy and Pharmaceutical Science
Address9500 Gilman Drive #0657
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Korkmaz S, Duarte JM, Prlic A, Goksuluk D, Zararsiz G, Saracbasi O, Burley S, Rose PW. Investigation of protein quaternary structure via stoichiometry and symmetry information. PLoS One. 2018; 13(6):e0197176. PMID: 29864163.
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    2. Odokonyero D, McMillan AW, Ramagopal UA, Toro R, Truong DP, Zhu M, Lopez MS, Somiari B, Herman M, Aziz A, Bonanno JB, Hull KG, Burley S, Romo D, Almo SC, Glasner ME. Comparison of Alicyclobacillus acidocaldarius OSBS to its promiscuous NSAR/OSBS relatives. Biochemistry. 2018 May 16. PMID: 29767960.
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    3. Tsang CK, Chen M, Cheng X, Qi Y, Chen Y, Das I, Li X, Vallat B, Fu LW, Qian CN, Wang HY, White E, Burley S, Zheng XFS. SOD1 Phosphorylation by mTORC1 Couples Nutrient Sensing and Redox Regulation. Mol Cell. 2018 May 03; 70(3):502-515.e8. PMID: 29727620.
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    4. Brunk E, Sahoo S, Zielinski DC, Altunkaya A, Dräger A, Mih N, Gatto F, Nilsson A, Preciat Gonzalez GA, Aurich MK, Prlic A, Sastry A, Danielsdottir AD, Heinken A, Noronha A, Rose PW, Burley S, Fleming RMT, Nielsen J, Thiele I, Palsson BO. Recon3D enables a three-dimensional view of gene variation in human metabolism. Nat Biotechnol. 2018 Mar; 36(3):272-281. PMID: 29457794.
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    5. Young JY, Westbrook JD, Feng Z, Peisach E, Persikova I, Sala R, Sen S, Berrisford JM, Swaminathan GJ, Oldfield TJ, Gutmanas A, Igarashi R, Armstrong DR, Baskaran K, Chen L, Chen M, Clark AR, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Ikegawa Y, Kengaku Y, Lawson CL, Liang Y, Mak L, Mukhopadhyay A, Narayanan B, Nishiyama K, Patwardhan A, Sahni G, Sanz-García E, Sato J, Sekharan MR, Shao C, Smart OS, Tan L, van Ginkel G, Yang H, Zhuravleva MA, Markley JL, Nakamura H, Kurisu G, Kleywegt GJ, Velankar S, Berman HM, Burley S. Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. Database (Oxford). 2018 Jan 01; 2018. PMID: 29688351.
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    6. Glusman G, Rose PW, Prlic A, Dougherty J, Duarte JM, Hoffman AS, Barton GJ, Bendixen E, Bergquist T, Bock C, Brunk E, Buljan M, Burley S, Cai B, Carter H, Gao J, Godzik A, Heuer M, Hicks M, Hrabe T, Karchin R, Leman JK, Lane L, Masica DL, Mooney SD, Moult J, Omenn GS, Pearl F, Pejaver V, Reynolds SM, Rokem A, Schwede T, Song S, Tilgner H, Valasatava Y, Zhang Y, Deutsch EW. Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework. Genome Med. 2017 Dec 18; 9(1):113. PMID: 29254494.
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    7. Gaieb Z, Liu S, Gathiaka S, Chiu M, Yang H, Shao C, Feher VA, Walters WP, Kuhn B, Rudolph MG, Burley S, Gilson MK, Amaro RE. D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. J Comput Aided Mol Des. 2018 Jan; 32(1):1-20. PMID: 29204945.
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    8. Gore S, Sanz García E, Hendrickx PMS, Gutmanas A, Westbrook JD, Yang H, Feng Z, Baskaran K, Berrisford JM, Hudson BP, Ikegawa Y, Kobayashi N, Lawson CL, Mading S, Mak L, Mukhopadhyay A, Oldfield TJ, Patwardhan A, Peisach E, Sahni G, Sekharan MR, Sen S, Shao C, Smart OS, Ulrich EL, Yamashita R, Quesada M, Young JY, Nakamura H, Markley JL, Berman HM, Burley S, Velankar S, Kleywegt GJ. Validation of Structures in the Protein Data Bank. Structure. 2017 Dec 05; 25(12):1916-1927. PMID: 29174494.
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    9. Burley S, Berman HM, Christie C, Duarte JM, Feng Z, Westbrook J, Young J, Zardecki C. RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education. Protein Sci. 2018 Jan; 27(1):316-330. PMID: 29067736.
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    10. Burley S, Kurisu G, Markley JL, Nakamura H, Velankar S, Berman HM, Sali A, Schwede T, Trewhella J. PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models. Structure. 2017 09 05; 25(9):1317-1318. PMID: 28877501.
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    11. Hegde RP, Fedorov AA, Sauder JM, Burley S, Almo SC, Ramagopal UA. The hidden treasure in your data: phasing with unexpected weak anomalous scatterers from routine data sets. Acta Crystallogr F Struct Biol Commun. 2017 04 01; 73(Pt 4):184-195. PMID: 28368276.
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    12. Bhattacharya R, Rose PW, Burley S, Prlic A. Impact of genetic variation on three dimensional structure and function of proteins. PLoS One. 2017; 12(3):e0171355. PMID: 28296894.
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    13. Shao C, Yang H, Westbrook JD, Young JY, Zardecki C, Burley S. Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive. Structure. 2017 03 07; 25(3):458-468. PMID: 28216043.
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    14. Young JY, Westbrook JD, Feng Z, Sala R, Peisach E, Oldfield TJ, Sen S, Gutmanas A, Armstrong DR, Berrisford JM, Chen L, Chen M, Di Costanzo L, Dimitropoulos D, Gao G, Ghosh S, Gore S, Guranovic V, Hendrickx PMS, Hudson BP, Igarashi R, Ikegawa Y, Kobayashi N, Lawson CL, Liang Y, Mading S, Mak L, Mir MS, Mukhopadhyay A, Patwardhan A, Persikova I, Rinaldi L, Sanz-Garcia E, Sekharan MR, Shao C, Swaminathan GJ, Tan L, Ulrich EL, van Ginkel G, Yamashita R, Yang H, Zhuravleva MA, Quesada M, Kleywegt GJ, Berman HM, Markley JL, Nakamura H, Velankar S, Burley S. OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive. Structure. 2017 03 07; 25(3):536-545. PMID: 28190782.
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    15. Burley S, Berman HM, Kleywegt GJ, Markley JL, Nakamura H, Velankar S. Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive. Methods Mol Biol. 2017; 1607:627-641. PMID: 28573592.
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    16. Grabowski M, Langner KM, Cymborowski M, Porebski PJ, Sroka P, Zheng H, Cooper DR, Zimmerman MD, Elsliger MA, Burley S, Minor W. A public database of macromolecular diffraction experiments. Acta Crystallogr D Struct Biol. 2016 11 01; 72(Pt 11):1181-1193. PMID: 27841751.
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    17. Rose PW, Prlic A, Altunkaya A, Bi C, Bradley AR, Christie CH, Costanzo LD, Duarte JM, Dutta S, Feng Z, Green RK, Goodsell DS, Hudson B, Kalro T, Lowe R, Peisach E, Randle C, Rose AS, Shao C, Tao YP, Valasatava Y, Voigt M, Westbrook JD, Woo J, Yang H, Young JY, Zardecki C, Berman HM, Burley S. The RCSB protein data bank: integrative view of protein, gene and 3D structural information. Nucleic Acids Res. 2017 Jan 04; 45(D1):D271-D281. PMID: 27794042.
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    18. Gathiaka S, Liu S, Chiu M, Yang H, Stuckey JA, Kang YN, Delproposto J, Kubish G, Dunbar JB, Carlson HA, Burley S, Walters WP, Amaro RE, Feher VA, Gilson MK. D3R grand challenge 2015: Evaluation of protein-ligand pose and affinity predictions. J Comput Aided Mol Des. 2016 09; 30(9):651-668. PMID: 27696240.
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    19. Costanzo LD, Ghosh S, Zardecki C, Burley S. Using the Tools and Resources of the RCSB Protein Data Bank. Curr Protoc Bioinformatics. 2016 Sep 07; 55:1.9.1-1.9.35. PMID: 27603019.
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    20. Prlic A, Kalro T, Bhattacharya R, Christie C, Burley S, Rose PW. Integrating genomic information with protein sequence and 3D atomic level structure at the RCSB protein data bank. Bioinformatics. 2016 12 15; 32(24):3833-3835. PMID: 27551105.
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    21. Berman HM, Burley S, Kleywegt GJ, Markley JL, Nakamura H, Velankar S. The archiving and dissemination of biological structure data. Curr Opin Struct Biol. 2016 10; 40:17-22. PMID: 27450113.
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    22. Yang H, Peisach E, Westbrook JD, Young J, Berman HM, Burley S. DCC: a Swiss army knife for structure factor analysis and validation. J Appl Crystallogr. 2016 Jun 01; 49(Pt 3):1081-1084. PMID: 27275151.
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    23. Adams PD, Aertgeerts K, Bauer C, Bell JA, Berman HM, Bhat TN, Blaney JM, Bolton E, Bricogne G, Brown D, Burley S, Case DA, Clark KL, Darden T, Emsley P, Feher VA, Feng Z, Groom CR, Harris SF, Hendle J, Holder T, Joachimiak A, Kleywegt GJ, Krojer T, Marcotrigiano J, Mark AE, Markley JL, Miller M, Minor W, Montelione GT, Murshudov G, Nakagawa A, Nakamura H, Nicholls A, Nicklaus M, Nolte RT, Padyana AK, Peishoff CE, Pieniazek S, Read RJ, Shao C, Sheriff S, Smart O, Soisson S, Spurlino J, Stouch T, Svobodova R, Tempel W, Terwilliger TC, Tronrud D, Velankar S, Ward SC, Warren GL, Westbrook JD, Williams P, Yang H, Young J. Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop. Structure. 2016 Apr 05; 24(4):502-508. PMID: 27050687.
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    24. Sali A, Berman HM, Schwede T, Trewhella J, Kleywegt G, Burley S, Markley J, Nakamura H, Adams P, Bonvin AM, Chiu W, Peraro MD, Di Maio F, Ferrin TE, Grünewald K, Gutmanas A, Henderson R, Hummer G, Iwasaki K, Johnson G, Lawson CL, Meiler J, Marti-Renom MA, Montelione GT, Nilges M, Nussinov R, Patwardhan A, Rappsilber J, Read RJ, Saibil H, Schröder GF, Schwieters CD, Seidel CA, Svergun D, Topf M, Ulrich EL, Velankar S, Westbrook JD. Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. Structure. 2015 Jul 07; 23(7):1156-67. PMID: 26095030.
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    25. Goodsell DS, Dutta S, Zardecki C, Voigt M, Berman HM, Burley S. The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology. PLoS Biol. 2015 May; 13(5):e1002140. PMID: 25942442; PMCID: PMC4420264.
    26. Wu TJ, Wang X, Zhang Y, Meng L, Kerrigan JE, Burley S, Zheng XF. Identification of a Non-Gatekeeper Hot Spot for Drug-Resistant Mutations in mTOR Kinase. Cell Rep. 2015 Apr 21; 11(3):446-59. PMID: 25865887; PMCID: PMC4761412.
    27. Rose PW, Prlic A, Bi C, Bluhm WF, Christie CH, Dutta S, Green RK, Goodsell DS, Westbrook JD, Woo J, Young J, Zardecki C, Berman HM, Bourne PE, Burley S. The RCSB Protein Data Bank: views of structural biology for basic and applied research and education. Nucleic Acids Res. 2015 Jan; 43(Database issue):D345-56. PMID: 25428375; PMCID: PMC4383988.
    28. Berman HM, Burley S, Kleywegt GJ, Nakamura H, Markley JL. Response to On prompt update of literature references in the Protein Data Bank. Acta Crystallogr D Biol Crystallogr. 2014 Oct; 70(Pt 10):2780. PMID: 25286863; PMCID: PMC4984264.
    29. Manjasetty BA, Chance MR, Burley S, Panjikar S, Almo SC. Crystal structure of Clostridium acetobutylicum Aspartate kinase (CaAK): An important allosteric enzyme for amino acids production. Biotechnol Rep (Amst). 2014 Sep 01; 3:73-85. PMID: 25170437.
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    30. Kim SJ, Fernandez-Martinez J, Sampathkumar P, Martel A, Matsui T, Tsuruta H, Weiss TM, Shi Y, Markina-Inarrairaegui A, Bonanno JB, Sauder JM, Burley S, Chait BT, Almo SC, Rout MP, Sali A. Integrative structure-function mapping of the nucleoporin Nup133 suggests a conserved mechanism for membrane anchoring of the nuclear pore complex. Mol Cell Proteomics. 2014 Nov; 13(11):2911-26. PMID: 25139911; PMCID: PMC4223481.
    31. Korczynska M, Xiang DF, Zhang Z, Xu C, Narindoshvili T, Kamat SS, Williams HJ, Chang SS, Kolb P, Hillerich B, Sauder JM, Burley S, Almo SC, Swaminathan S, Shoichet BK, Raushel FM. Functional annotation and structural characterization of a novel lactonase hydrolyzing D-xylono-1,4-lactone-5-phosphate and L-arabino-1,4-lactone-5-phosphate. Biochemistry. 2014 Jul 22; 53(28):4727-38. PMID: 24955762; PMCID: PMC4108184.
    32. Odokonyero D, Sakai A, Patskovsky Y, Malashkevich VN, Fedorov AA, Bonanno JB, Fedorov EV, Toro R, Agarwal R, Wang C, Ozerova ND, Yew WS, Sauder JM, Swaminathan S, Burley S, Almo SC, Glasner ME. Loss of quaternary structure is associated with rapid sequence divergence in the OSBS family. Proc Natl Acad Sci U S A. 2014 Jun 10; 111(23):8535-40. PMID: 24872444; PMCID: PMC4060685.
    33. Goodsell DS, Burley S, Berman HM. Revealing structural views of biology. Biopolymers. 2013 Nov; 99(11):817-24. PMID: 23821527.
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    34. Odokonyero D, Ragumani S, Lopez MS, Bonanno JB, Ozerova ND, Woodard DR, Machala BW, Swaminathan S, Burley S, Almo SC, Glasner ME. Divergent evolution of ligand binding in the o-succinylbenzoate synthase family. Biochemistry. 2013 Oct 22; 52(42):7512-21. PMID: 24060347; PMCID: PMC3908897.
    35. Daughtry KD, Huang H, Malashkevich V, Patskovsky Y, Liu W, Ramagopal U, Sauder JM, Burley S, Almo SC, Dunaway-Mariano D, Allen KN. Structural basis for the divergence of substrate specificity and biological function within HAD phosphatases in lipopolysaccharide and sialic acid biosynthesis. Biochemistry. 2013 Aug 13; 52(32):5372-86. PMID: 23848398; PMCID: PMC3966652.
    36. Almo SC, Garforth SJ, Hillerich BS, Love JD, Seidel RD, Burley S. Protein production from the structural genomics perspective: achievements and future needs. Curr Opin Struct Biol. 2013 Jun; 23(3):335-44. PMID: 23642905; PMCID: PMC4163025.
    37. Sampathkumar P, Kim SJ, Upla P, Rice WJ, Phillips J, Timney BL, Pieper U, Bonanno JB, Fernandez-Martinez J, Hakhverdyan Z, Ketaren NE, Matsui T, Weiss TM, Stokes DL, Sauder JM, Burley S, Sali A, Rout MP, Almo SC. Structure, dynamics, evolution, and function of a major scaffold component in the nuclear pore complex. Structure. 2013 Apr 02; 21(4):560-71. PMID: 23499021; PMCID: PMC3755625.
    38. Burley S. PDB40: The Protein Data Bank celebrates its 40th birthday. Biopolymers. 2013 Mar; 99(3):165-7. PMID: 23280389.
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    39. Knapp S, Arruda P, Blagg J, Burley S, Drewry DH, Edwards A, Fabbro D, Gillespie P, Gray NS, Kuster B, Lackey KE, Mazzafera P, Tomkinson NC, Willson TM, Workman P, Zuercher WJ. A public-private partnership to unlock the untargeted kinome. Nat Chem Biol. 2013 Jan; 9(1):3-6. PMID: 23238671.
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    40. Palani K, Burley S, Swaminathan S. Structure of alanine racemase from Oenococcus oeni with bound pyridoxal 5'-phosphate. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jan 01; 69(Pt 1):15-9. PMID: 23295479; PMCID: PMC3539696.
    41. Palani K, Kumaran D, Burley S, Swaminathan S. Structure of a periplasmic glucose-binding protein from Thermotoga maritima. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Dec 01; 68(Pt 12):1460-4. PMID: 23192024; PMCID: PMC3509965.
    42. Warlick BP, Evans BS, Erb TJ, Ramagopal UA, Sriram J, Imker HJ, Sauder JM, Bonanno JB, Burley S, Tabita FR, Almo SC, Sweedler JS, Gerlt JA. 1-methylthio-D-xylulose 5-phosphate methylsulfurylase: a novel route to 1-deoxy-D-xylulose 5-phosphate in Rhodospirillum rubrum. Biochemistry. 2012 Oct 23; 51(42):8324-6. PMID: 23035785; PMCID: PMC3490199.
    43. Garside EL, Schellenberg MJ, Gesner EM, Bonanno JB, Sauder JM, Burley S, Almo SC, Mehta G, MacMillan AM. Cas5d processes pre-crRNA and is a member of a larger family of CRISPR RNA endonucleases. RNA. 2012 Nov; 18(11):2020-8. PMID: 23006625; PMCID: PMC3479392.
    44. Sampathkumar P, Kim SJ, Manglicmot D, Bain KT, Gilmore J, Gheyi T, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Matsui T, Tsuruta H, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Rout MP, Sali A, Sauder JM, Almo SC, Burley S. Atomic structure of the nuclear pore complex targeting domain of a Nup116 homologue from the yeast, Candida glabrata. Proteins. 2012 Aug; 80(8):2110-6. PMID: 22544723; PMCID: PMC3686472.
    45. Wasserman SR, Koss JW, Sojitra ST, Morisco LL, Burley S. Rapid-access, high-throughput synchrotron crystallography for drug discovery. Trends Pharmacol Sci. 2012 May; 33(5):261-7. PMID: 22521107.
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    46. Hobbs ME, Malashkevich V, Williams HJ, Xu C, Sauder JM, Burley S, Almo SC, Raushel FM. Structure and catalytic mechanism of LigI: insight into the amidohydrolase enzymes of cog3618 and lignin degradation. Biochemistry. 2012 Apr 24; 51(16):3497-507. PMID: 22475079; PMCID: PMC3416963.
    47. Agarwal R, Burley S, Swaminathan S. Structural insight into mechanism and diverse substrate selection strategy of L-ribulokinase. Proteins. 2012 Jan; 80(1):261-8. PMID: 22072612; PMCID: PMC3240725.
    48. Kamat SS, Holmes-Hampton GP, Bagaria A, Kumaran D, Tichy SE, Gheyi T, Zheng X, Bain K, Groshong C, Emtage S, Sauder JM, Burley S, Swaminathan S, Lindahl PA, Raushel FM. The catalase activity of diiron adenine deaminase. Protein Sci. 2011 Dec; 20(12):2080-94. PMID: 21998098; PMCID: PMC3302651.
    49. Suttisansanee U, Lau K, Lagishetty S, Rao KN, Swaminathan S, Sauder JM, Burley S, Honek JF. Structural variation in bacterial glyoxalase I enzymes: investigation of the metalloenzyme glyoxalase I from Clostridium acetobutylicum. J Biol Chem. 2011 Nov 04; 286(44):38367-74. PMID: 21914803; PMCID: PMC3207458.
    50. Burley S, Sonenberg N. Gimme phospho-serine five! Capping enzyme guanylyltransferase recognition of the RNA polymerase II CTD. Mol Cell. 2011 Jul 22; 43(2):163-5. PMID: 21777807.
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    51. Teplova M, Malinina L, Darnell JC, Song J, Lu M, Abagyan R, Musunuru K, Teplov A, Burley S, Darnell RB, Patel DJ. Protein-RNA and protein-protein recognition by dual KH1/2 domains of the neuronal splicing factor Nova-1. Structure. 2011 Jul 13; 19(7):930-44. PMID: 21742260; PMCID: PMC3134789.
    52. Goble AM, Zhang Z, Sauder JM, Burley S, Swaminathan S, Raushel FM. Pa0148 from Pseudomonas aeruginosa catalyzes the deamination of adenine. Biochemistry. 2011 Aug 02; 50(30):6589-97. PMID: 21710971; PMCID: PMC3151671.
    53. Shi W, Punta M, Bohon J, Sauder JM, D'Mello R, Sullivan M, Toomey J, Abel D, Lippi M, Passerini A, Frasconi P, Burley S, Rost B, Chance MR. Characterization of metalloproteins by high-throughput X-ray absorption spectroscopy. Genome Res. 2011 Jun; 21(6):898-907. PMID: 21482623; PMCID: PMC3106322.
    54. Sampathkumar P, Gheyi T, Miller SA, Bain KT, Dickey M, Bonanno JB, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Rout MP, Sali A, Sauder JM, Burley S. Structure of the C-terminal domain of Saccharomyces cerevisiae Nup133, a component of the nuclear pore complex. Proteins. 2011 May; 79(5):1672-7. PMID: 21365675; PMCID: PMC3350809.
    55. Bagaria A, Kumaran D, Burley S, Swaminathan S. Structural basis for a ribofuranosyl binding protein: insights into the furanose specific transport. Proteins. 2011 Apr; 79(4):1352-7. PMID: 21387413; PMCID: PMC3077950.
    56. Kamat SS, Bagaria A, Kumaran D, Holmes-Hampton GP, Fan H, Sali A, Sauder JM, Burley S, Lindahl PA, Swaminathan S, Raushel FM. Catalytic mechanism and three-dimensional structure of adenine deaminase. Biochemistry. 2011 Mar 22; 50(11):1917-27. PMID: 21247091; PMCID: PMC3059353.
    57. Kamat SS, Fan H, Sauder JM, Burley S, Shoichet BK, Sali A, Raushel FM. Enzymatic deamination of the epigenetic base N-6-methyladenine. J Am Chem Soc. 2011 Feb 23; 133(7):2080-3. PMID: 21275375; PMCID: PMC3043370.
    58. Zhang Z, Zhou R, Sauder JM, Tonge PJ, Burley S, Swaminathan S. Structural and functional studies of fatty acyl adenylate ligases from E. coli and L. pneumophila. J Mol Biol. 2011 Feb 18; 406(2):313-24. PMID: 21185305; PMCID: PMC3040979.
    59. Pieper U, Webb BM, Barkan DT, Schneidman-Duhovny D, Schlessinger A, Braberg H, Yang Z, Meng EC, Pettersen EF, Huang CC, Datta RS, Sampathkumar P, Madhusudhan MS, Sjölander K, Ferrin TE, Burley S, Sali A. ModBase, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res. 2011 Jan; 39(Database issue):D465-74. PMID: 21097780; PMCID: PMC3013688.
    60. Wisedchaisri G, Dranow DM, Lie TJ, Bonanno JB, Patskovsky Y, Ozyurt SA, Sauder JM, Almo SC, Wasserman SR, Burley S, Leigh JA, Gonen T. Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR. Structure. 2010 Nov 10; 18(11):1512-21. PMID: 21070950; PMCID: PMC2996049.
    61. Sampathkumar P, Lu F, Zhao X, Li Z, Gilmore J, Bain K, Rutter ME, Gheyi T, Schwinn KD, Bonanno JB, Pieper U, Fajardo JE, Fiser A, Almo SC, Swaminathan S, Chance MR, Baker D, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Sali A, Sauder JM, Burley S. Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution. Proteins. 2010 Nov 01; 78(14):3056-62. PMID: 20737437; PMCID: PMC2989796.
    62. Kikani CK, Antonysamy SA, Bonanno JB, Romero R, Zhang FF, Russell M, Gheyi T, Iizuka M, Emtage S, Sauder JM, Turk BE, Burley S, Rutter J. Structural bases of PAS domain-regulated kinase (PASK) activation in the absence of activation loop phosphorylation. J Biol Chem. 2010 Dec 24; 285(52):41034-43. PMID: 20943661; PMCID: PMC3003402.
    63. Xiang DF, Patskovsky Y, Xu C, Fedorov AA, Fedorov EV, Sisco AA, Sauder JM, Burley S, Almo SC, Raushel FM. Functional identification and structure determination of two novel prolidases from cog1228 in the amidohydrolase superfamily . Biochemistry. 2010 Aug 10; 49(31):6791-803. PMID: 20604542; PMCID: PMC2914802.
    64. Gheyi T, Rodgers L, Romero R, Sauder JM, Burley S. Mass spectrometry guided in situ proteolysis to obtain crystals for X-ray structure determination. J Am Soc Mass Spectrom. 2010 Oct; 21(10):1795-801. PMID: 20685133; PMCID: PMC2963156.
    65. Sampathkumar P, Ozyurt SA, Do J, Bain KT, Dickey M, Rodgers LA, Gheyi T, Sali A, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Rout MP, Sauder JM, Burley S. Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145. Proteins. 2010 Jun; 78(8):1992-8. PMID: 20310066; PMCID: PMC3136511.
    66. Hall RS, Agarwal R, Hitchcock D, Sauder JM, Burley S, Swaminathan S, Raushel FM. Discovery and structure determination of the orphan enzyme isoxanthopterin deaminase . Biochemistry. 2010 May 25; 49(20):4374-82. PMID: 20415463; PMCID: PMC2892419.
    67. Hall RS, Fedorov AA, Marti-Arbona R, Fedorov EV, Kolb P, Sauder JM, Burley S, Shoichet BK, Almo SC, Raushel FM. The hunt for 8-oxoguanine deaminase. J Am Chem Soc. 2010 Feb 17; 132(6):1762-3. PMID: 20088583; PMCID: PMC2820149.
    68. Sampathkumar P, Ozyurt SA, Miller SA, Bain KT, Rutter ME, Gheyi T, Abrams B, Wang Y, Atwell S, Luz JG, Thompson DA, Wasserman SR, Emtage JS, Park EC, Rongo C, Jin Y, Klemke RL, Sauder JM, Burley S. Structures of PHR domains from Mus musculus Phr1 (Mycbp2) explain the loss-of-function mutation (Gly1092-->Glu) of the C. elegans ortholog RPM-1. J Mol Biol. 2010 Apr 09; 397(4):883-92. PMID: 20156452; PMCID: PMC2881670.
    69. Ragumani S, Sauder JM, Burley S, Swaminathan S. Structural studies on cytosolic domain of magnesium transporter MgtE from Enterococcus faecalis. Proteins. 2010 Feb 01; 78(2):487-91. PMID: 19787770; PMCID: PMC3221319.
    70. Berman HM, Kleywegt GJ, Nakamura H, Markley JL, Burley S. Safeguarding the integrity of protein archive. Nature. 2010 Jan 28; 463(7280):425. PMID: 20110969; PMCID: PMC4456675.
    71. Lakshminarasimhan D, Eswaramoorthy S, Burley S, Swaminathan S. Structure of YqgQ protein from Bacillus subtilis, a conserved hypothetical protein. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jan 01; 66(Pt 1):8-11. PMID: 20057058; PMCID: PMC2805524.
    72. Rakus JF, Kalyanaraman C, Fedorov AA, Fedorov EV, Mills-Groninger FP, Toro R, Bonanno J, Bain K, Sauder JM, Burley S, Almo SC, Jacobson MP, Gerlt JA. Computation-facilitated assignment of the function in the enolase superfamily: a regiochemically distinct galactarate dehydratase from Oceanobacillus iheyensis . Biochemistry. 2009 Dec 08; 48(48):11546-58. PMID: 19883118; PMCID: PMC2787699.
    73. Buchanan SG, Hendle J, Lee PS, Smith CR, Bounaud PY, Jessen KA, Tang CM, Huser NH, Felce JD, Froning KJ, Peterman MC, Aubol BE, Gessert SF, Sauder JM, Schwinn KD, Russell M, Rooney IA, Adams J, Leon BC, Do TH, Blaney JM, Sprengeler PA, Thompson DA, Smyth L, Pelletier LA, Atwell S, Holme K, Wasserman SR, Emtage S, Burley S, Reich SH. SGX523 is an exquisitely selective, ATP-competitive inhibitor of the MET receptor tyrosine kinase with antitumor activity in vivo. Mol Cancer Ther. 2009 Dec; 8(12):3181-90. PMID: 19934279.
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    74. Robert F, Williams C, Yan Y, Donohue E, Cencic R, Burley S, Pelletier J. Blocking UV-induced eIF2alpha phosphorylation with small molecule inhibitors of GCN2. Chem Biol Drug Des. 2009 Jul; 74(1):57-67. PMID: 19519745.
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    75. Xiang DF, Xu C, Kumaran D, Brown AC, Sauder JM, Burley S, Swaminathan S, Raushel FM. Functional annotation of two new carboxypeptidases from the amidohydrolase superfamily of enzymes. Biochemistry. 2009 Jun 02; 48(21):4567-76. PMID: 19358546; PMCID: PMC2748308.
    76. Xiang DF, Patskovsky Y, Xu C, Meyer AJ, Sauder JM, Burley S, Almo SC, Raushel FM. Functional identification of incorrectly annotated prolidases from the amidohydrolase superfamily of enzymes. Biochemistry. 2009 May 05; 48(17):3730-42. PMID: 19281183; PMCID: PMC2683473.
    77. Leiman PG, Basler M, Ramagopal UA, Bonanno JB, Sauder JM, Pukatzki S, Burley S, Almo SC, Mekalanos JJ. Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin. Proc Natl Acad Sci U S A. 2009 Mar 17; 106(11):4154-9. PMID: 19251641; PMCID: PMC2657435.
    78. Sakai A, Fedorov AA, Fedorov EV, Schnoes AM, Glasner ME, Brown S, Rutter ME, Bain K, Chang S, Gheyi T, Sauder JM, Burley S, Babbitt PC, Almo SC, Gerlt JA. Evolution of enzymatic activities in the enolase superfamily: stereochemically distinct mechanisms in two families of cis,cis-muconate lactonizing enzymes. Biochemistry. 2009 Feb 24; 48(7):1445-53. PMID: 19220063; PMCID: PMC2746992.
    79. Pieper U, Chiang R, Seffernick JJ, Brown SD, Glasner ME, Kelly L, Eswar N, Sauder JM, Bonanno JB, Swaminathan S, Burley S, Zheng X, Chance MR, Almo SC, Gerlt JA, Raushel FM, Jacobson MP, Babbitt PC, Sali A. Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies. J Struct Funct Genomics. 2009 Apr; 10(2):107-25. PMID: 19219566; PMCID: PMC2693957.
    80. Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley S, Das R, Dokholyan NV, Dunbrack RL, Fidelis K, Fiser A, Godzik A, Huang YJ, Humblet C, Jacobson MP, Joachimiak A, Krystek SR, Kortemme T, Kryshtafovych A, Montelione GT, Moult J, Murray D, Sanchez R, Sosnick TR, Standley DM, Stouch T, Vajda S, Vasquez M, Westbrook JD, Wilson IA. Outcome of a workshop on applications of protein models in biomedical research. Structure. 2009 Feb 13; 17(2):151-9. PMID: 19217386; PMCID: PMC2739730.
    81. Rao KN, Burley S, Swaminathan S. UPF201 archaeal specific family members reveal structural similarity to RNA-binding proteins but low likelihood for RNA-binding function. PLoS One. 2008; 3(12):e3903. PMID: 19079550.
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    82. Ragumani S, Kumaran D, Burley S, Swaminathan S. Crystal structure of a putative lysostaphin peptidase from Vibrio cholerae. Proteins. 2008 Aug 15; 72(3):1096-103. PMID: 18498110; PMCID: PMC3614409.
    83. Madegowda M, Eswaramoorthy S, Burley S, Swaminathan S. X-ray crystal structure of the B component of Hemolysin BL from Bacillus cereus. Proteins. 2008 May 01; 71(2):534-40. PMID: 18175317; PMCID: PMC3220058.
    84. Agarwal R, Burley S, Swaminathan S. A novel mode of dimerization via formation of a glutamate anhydride crosslink in a protein crystal structure. Proteins. 2008 May 01; 71(2):1038-41. PMID: 18247349.
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    85. Tyagi R, Eswaramoorthy S, Burley S, Raushel FM, Swaminathan S. A common catalytic mechanism for proteins of the HutI family. Biochemistry. 2008 May 20; 47(20):5608-15. PMID: 18442260; PMCID: PMC3232013.
    86. O'Hare T, Eide CA, Tyner JW, Corbin AS, Wong MJ, Buchanan S, Holme K, Jessen KA, Tang C, Lewis HA, Romero RD, Burley S, Deininger MW. SGX393 inhibits the CML mutant Bcr-AblT315I and preempts in vitro resistance when combined with nilotinib or dasatinib. Proc Natl Acad Sci U S A. 2008 Apr 08; 105(14):5507-12. PMID: 18367669; PMCID: PMC2291110.
    87. Protein production and purification. Nat Methods. 2008 Feb; 5(2):135-46. PMID: 18235434; PMCID: PMC3178102.
    88. Agarwal R, Burley S, Swaminathan S. Structure of human dual specificity protein phosphatase 23, VHZ, enzyme-substrate/product complex. J Biol Chem. 2008 Apr 04; 283(14):8946-53. PMID: 18245086.
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    89. Rao KN, Burley S, Swaminathan S. Crystal structure of a conserved protein of unknown function (MJ1651) from Methanococcus jannaschii. Proteins. 2008 Feb 01; 70(2):572-7. PMID: 17910070.
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    90. Burley S, Joachimiak A, Montelione GT, Wilson IA. Contributions to the NIH-NIGMS Protein Structure Initiative from the PSI Production Centers. Structure. 2008 Jan; 16(1):5-11. PMID: 18184575; PMCID: PMC2678832.
    91. Sauder MJ, Rutter ME, Bain K, Rooney I, Gheyi T, Atwell S, Thompson DA, Emtage S, Burley S. High throughput protein production and crystallization at NYSGXRC. Methods Mol Biol. 2008; 426:561-75. PMID: 18542890.
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    92. Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley S. Structural genomics of protein phosphatases. J Struct Funct Genomics. 2007 Sep; 8(2-3):121-40. PMID: 18058037; PMCID: PMC4163028.
    93. Tyagi R, Kumaran D, Burley S, Swaminathan S. X-ray structure of imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution. Proteins. 2007 Nov 15; 69(3):652-8. PMID: 17640072.
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    94. Tyagi R, Burley S, Swaminathan S. X-ray structures of two proteins belonging to Pfam DUF178 revealed unexpected structural similarity to the DUF191 Pfam family. BMC Struct Biol. 2007 Oct 01; 7:62. PMID: 17908300; PMCID: PMC2174479.
    95. Agarwal R, Burley S, Swaminathan S. Structural analysis of a ternary complex of allantoate amidohydrolase from Escherichia coli reveals its mechanics. J Mol Biol. 2007 Apr 27; 368(2):450-63. PMID: 17362992.
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    96. Sabini E, Hazra S, Konrad M, Burley S, Lavie A. Structural basis for activation of the therapeutic L-nucleoside analogs 3TC and troxacitabine by human deoxycytidine kinase. Nucleic Acids Res. 2007; 35(1):186-92. PMID: 17158155; PMCID: PMC1802566.
    97. Rao KN, Bonanno JB, Burley S, Swaminathan S. Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens by SAD with a large asymmetric unit. Proteins. 2006 Nov 01; 65(2):514-8. PMID: 16909422.
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    98. Kumaran D, Bonanno JB, Burley S, Swaminathan S. Crystal structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two "proton wires". Proteins. 2006 Sep 01; 64(4):851-62. PMID: 16838328.
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    99. Berman HM, Burley S, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH, Dunbrack RL, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, Heymann B, Jones D, Markley JL, Moult J, Montelione GT, Orengo C, Rossmann MG, Rost B, Saibil H, Schwede T, Standley DM, Westbrook JD. Outcome of a workshop on archiving structural models of biological macromolecules. Structure. 2006 Aug; 14(8):1211-7. PMID: 16955948.
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    100. Rao KN, Kumaran D, Seetharaman J, Bonanno JB, Burley S, Swaminathan S. Crystal structure of trehalose-6-phosphate phosphatase-related protein: biochemical and biological implications. Protein Sci. 2006 Jul; 15(7):1735-44. PMID: 16815921; PMCID: PMC2242562.
    101. Eswaramoorthy S, Bonanno JB, Burley S, Swaminathan S. Mechanism of action of a flavin-containing monooxygenase. Proc Natl Acad Sci U S A. 2006 Jun 27; 103(26):9832-7. PMID: 16777962; PMCID: PMC1502539.
    102. Seetharaman J, Rajashankar KR, Solorzano V, Kniewel R, Lima CD, Bonanno JB, Burley S, Swaminathan S. Crystal structures of two putative phosphoheptose isomerases. Proteins. 2006 Jun 01; 63(4):1092-6. PMID: 16477602; PMCID: PMC1769519.
    103. Seetharaman J, Kumaran D, Bonanno JB, Burley S, Swaminathan S. Crystal structure of a putative HTH-type transcriptional regulator yxaF from Bacillus subtilis. Proteins. 2006 Jun 01; 63(4):1087-91. PMID: 16475182; PMCID: PMC1752215.
    104. Bellsolell L, Cho-Park PF, Poulin F, Sonenberg N, Burley S. Two structurally atypical HEAT domains in the C-terminal portion of human eIF4G support binding to eIF4A and Mnk1. Structure. 2006 May; 14(5):913-23. PMID: 16698552.
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    105. Burley S. Cancer and kinases: reports from the front line. Genome Biol. 2006; 7(4):314. PMID: 16677415; PMCID: PMC1557988.
    106. Agarwal R, Bonanno JB, Burley S, Swaminathan S. Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal. Acta Crystallogr D Biol Crystallogr. 2006 Apr; 62(Pt 4):383-91. PMID: 16552139; PMCID: PMC1431508.
    107. Burley S, Park F. Meeting the challenges of drug discovery: a multidisciplinary re-evaluation of current practices. Keystone Symposium 'Meeting the Challenges of Drug Discovery', Vancouver, Canada, 15-19 January 2005. Genome Biol. 2005; 6(7):330. PMID: 15998459; PMCID: PMC1175982.
    108. Padyana AK, Qiu H, Roll-Mecak A, Hinnebusch AG, Burley S. Structural basis for autoinhibition and mutational activation of eukaryotic initiation factor 2alpha protein kinase GCN2. J Biol Chem. 2005 Aug 12; 280(32):29289-99. PMID: 15964839.
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    109. Matte A, Louie GV, Sivaraman J, Cygler M, Burley S. Structure of the pseudouridine synthase RsuA from Haemophilus influenzae. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Apr 01; 61(Pt 4):350-4. PMID: 16511038; PMCID: PMC1952432.
    110. Bonanno JB, Almo SC, Bresnick A, Chance MR, Fiser A, Swaminathan S, Jiang J, Studier FW, Shapiro L, Lima CD, Gaasterland TM, Sali A, Bain K, Feil I, Gao X, Lorimer D, Ramos A, Sauder JM, Wasserman SR, Emtage S, D'Amico KL, Burley S. New York-Structural GenomiX Research Consortium (NYSGXRC): a large scale center for the protein structure initiative. J Struct Funct Genomics. 2005; 6(2-3):225-32. PMID: 16211523.
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    111. Sickmier EA, Brekasis D, Paranawithana S, Bonanno JB, Paget MS, Burley S, Kielkopf CL. X-ray structure of a Rex-family repressor/NADH complex insights into the mechanism of redox sensing. Structure. 2005 Jan; 13(1):43-54. PMID: 15642260.
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    112. Gao X, Bain K, Bonanno JB, Buchanan M, Henderson D, Lorimer D, Marsh C, Reynes JA, Sauder JM, Schwinn K, Thai C, Burley S. High-throughput limited proteolysis/mass spectrometry for protein domain elucidation. J Struct Funct Genomics. 2005; 6(2-3):129-34. PMID: 16211509.
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    113. Niessing D, Hüttelmaier S, Zenklusen D, Singer RH, Burley S. She2p is a novel RNA binding protein with a basic helical hairpin motif. Cell. 2004 Nov 12; 119(4):491-502. PMID: 15537539.
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    114. Atwell S, Adams JM, Badger J, Buchanan MD, Feil IK, Froning KJ, Gao X, Hendle J, Keegan K, Leon BC, Müller-Dieckmann HJ, Nienaber VL, Noland BW, Post K, Rajashankar KR, Ramos A, Russell M, Burley S, Buchanan SG. A novel mode of Gleevec binding is revealed by the structure of spleen tyrosine kinase. J Biol Chem. 2004 Dec 31; 279(53):55827-32. PMID: 15507431.
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    115. Roll-Mecak A, Alone P, Cao C, Dever TE, Burley S. X-ray structure of translation initiation factor eIF2gamma: implications for tRNA and eIF2alpha binding. J Biol Chem. 2004 Mar 12; 279(11):10634-42. PMID: 14688270.
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    116. Lewis HA, Buchanan SG, Burley S, Conners K, Dickey M, Dorwart M, Fowler R, Gao X, Guggino WB, Hendrickson WA, Hunt JF, Kearins MC, Lorimer D, Maloney PC, Post KW, Rajashankar KR, Rutter ME, Sauder JM, Shriver S, Thibodeau PH, Thomas PJ, Zhang M, Zhao X, Emtage S. Structure of nucleotide-binding domain 1 of the cystic fibrosis transmembrane conductance regulator. EMBO J. 2004 Jan 28; 23(2):282-93. PMID: 14685259; PMCID: PMC1271750.
    117. Deo RC, Schmidt EF, Elhabazi A, Togashi H, Burley S, Strittmatter SM. Structural bases for CRMP function in plexin-dependent semaphorin3A signaling. EMBO J. 2004 Jan 14; 23(1):9-22. PMID: 14685275; PMCID: PMC1271659.
    118. Padyana AK, Burley S. Crystal structure of shikimate 5-dehydrogenase (SDH) bound to NADP: insights into function and evolution. Structure. 2003 Aug; 11(8):1005-13. PMID: 12906831.
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    119. Kamada K, Hanaoka F, Burley S. Crystal structure of the MazE/MazF complex: molecular bases of antidote-toxin recognition. Mol Cell. 2003 Apr; 11(4):875-84. PMID: 12718874.
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    120. Trester-Zedlitz M, Kamada K, Burley S, Fenyö D, Chait BT, Muir TW. A modular cross-linking approach for exploring protein interactions. J Am Chem Soc. 2003 Mar 05; 125(9):2416-25. PMID: 12603129.
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    121. Kamada K, Roeder RG, Burley S. Molecular mechanism of recruitment of TFIIF- associating RNA polymerase C-terminal domain phosphatase (FCP1) by transcription factor IIF. Proc Natl Acad Sci U S A. 2003 Mar 04; 100(5):2296-9. PMID: 12591941; PMCID: PMC151334.
    122. Nair SK, Burley S. X-ray structures of Myc-Max and Mad-Max recognizing DNA. Molecular bases of regulation by proto-oncogenic transcription factors. Cell. 2003 Jan 24; 112(2):193-205. PMID: 12553908.
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    123. Zuberek J, Wyslouch-Cieszynska A, Niedzwiecka A, Dadlez M, Stepinski J, Augustyniak W, Gingras AC, Zhang Z, Burley S, Sonenberg N, Stolarski R, Darzynkiewicz E. Phosphorylation of eIF4E attenuates its interaction with mRNA 5' cap analogs by electrostatic repulsion: intein-mediated protein ligation strategy to obtain phosphorylated protein. RNA. 2003 Jan; 9(1):52-61. PMID: 12554876; PMCID: PMC1370370.
    124. Burley S, Bonanno JB. Structural genomics. Methods Biochem Anal. 2003; 44:591-612. PMID: 12647406.
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    125. Ray SS, Bonanno JB, Chen H, de Lencastre H, Wu S, Tomasz A, Burley S. X-ray structure of an M. jannaschii DNA-binding protein: implications for antibiotic resistance in S. aureus. Proteins. 2003 Jan 01; 50(1):170-3. PMID: 12471609.
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    126. Shin BS, Maag D, Roll-Mecak A, Arefin MS, Burley S, Lorsch JR, Dever TE. Uncoupling of initiation factor eIF5B/IF2 GTPase and translational activities by mutations that lower ribosome affinity. Cell. 2002 Dec 27; 111(7):1015-25. PMID: 12507428.
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    127. Pilloff D, Dabovic K, Romanowski MJ, Bonanno JB, Doherty M, Burley S, Leyh TS. The kinetic mechanism of phosphomevalonate kinase. J Biol Chem. 2003 Feb 14; 278(7):4510-5. PMID: 12424232.
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    128. Ray SS, Bonanno JB, Rajashankar KR, Pinho MG, He G, De Lencastre H, Tomasz A, Burley S. Cocrystal structures of diaminopimelate decarboxylase: mechanism, evolution, and inhibition of an antibiotic resistance accessory factor. Structure. 2002 Nov; 10(11):1499-508. PMID: 12429091.
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    129. Kielkopf CL, Burley S. X-ray structures of threonine aldolase complexes: structural basis of substrate recognition. Biochemistry. 2002 Oct 01; 41(39):11711-20. PMID: 12269813.
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    130. Deaconescu AM, Roll-Mecak A, Bonanno JB, Gerchman SE, Kycia H, Studier FW, Burley S. X-ray structure of Saccharomyces cerevisiae homologous mitochondrial matrix factor 1 (Hmf1). Proteins. 2002 Aug 01; 48(2):431-6. PMID: 12112709.
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    131. Niedzwiecka A, Marcotrigiano J, Stepinski J, Jankowska-Anyszka M, Wyslouch-Cieszynska A, Dadlez M, Gingras AC, Mak P, Darzynkiewicz E, Sonenberg N, Burley S, Stolarski R. Biophysical studies of eIF4E cap-binding protein: recognition of mRNA 5' cap structure and synthetic fragments of eIF4G and 4E-BP1 proteins. J Mol Biol. 2002 Jun 07; 319(3):615-35. PMID: 12054859.
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    132. Romanowski MJ, Bonanno JB, Burley S. Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold. Proteins. 2002 Jun 01; 47(4):563-7. PMID: 12001236.
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    133. Romanowski MJ, Bonanno JB, Burley S. Crystal structure of the Streptococcus pneumoniae phosphomevalonate kinase, a member of the GHMP kinase superfamily. Proteins. 2002 Jun 01; 47(4):568-71. PMID: 12001237.
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    134. Romanowski MJ, Burley S. Crystal structure of the Escherichia coli shikimate kinase I (AroK) that confers sensitivity to mecillinam. Proteins. 2002 Jun 01; 47(4):558-62. PMID: 12001235.
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    135. Groft CM, Burley S. Recognition of eIF4G by rotavirus NSP3 reveals a basis for mRNA circularization. Mol Cell. 2002 Jun; 9(6):1273-83. PMID: 12086624.
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    136. Burley S, Bonanno JB. Structural genomics of proteins from conserved biochemical pathways and processes. Curr Opin Struct Biol. 2002 Jun; 12(3):383-91. PMID: 12127459.
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    137. Romanowski MJ, Gibney SA, Burley S. Crystal structure of the Escherichia coli SbmC protein that protects cells from the DNA replication inhibitor microcin B17. Proteins. 2002 May 15; 47(3):403-7. PMID: 11948793.
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    138. Soccio RE, Adams RM, Romanowski MJ, Sehayek E, Burley S, Breslow JL. The cholesterol-regulated StarD4 gene encodes a StAR-related lipid transfer protein with two closely related homologues, StarD5 and StarD6. Proc Natl Acad Sci U S A. 2002 May 14; 99(10):6943-8. PMID: 12011452; PMCID: PMC124508.
    139. Romanowski MJ, Soccio RE, Breslow JL, Burley S. Crystal structure of the Mus musculus cholesterol-regulated START protein 4 (StarD4) containing a StAR-related lipid transfer domain. Proc Natl Acad Sci U S A. 2002 May 14; 99(10):6949-54. PMID: 12011453; PMCID: PMC124509.
    140. Burley S, Bonanno JB. Structuring the universe of proteins. Annu Rev Genomics Hum Genet. 2002; 3:243-62. PMID: 12194989.
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    141. Burley S, Kamada K. Transcription factor complexes. Curr Opin Struct Biol. 2002 Apr; 12(2):225-30. PMID: 11959501.
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    142. Chance MR, Bresnick AR, Burley S, Jiang JS, Lima CD, Sali A, Almo SC, Bonanno JB, Buglino JA, Boulton S, Chen H, Eswar N, He G, Huang R, Ilyin V, McMahan L, Pieper U, Ray S, Vidal M, Wang LK. Structural genomics: a pipeline for providing structures for the biologist. Protein Sci. 2002 Apr; 11(4):723-38. PMID: 11910018; PMCID: PMC2373525.
    143. Wolf E, De Angelis J, Khalil EM, Cole PA, Burley S. X-ray crystallographic studies of serotonin N-acetyltransferase catalysis and inhibition. J Mol Biol. 2002 Mar 22; 317(2):215-24. PMID: 11902838.
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    144. Scheibner KA, De Angelis J, Burley S, Cole PA. Investigation of the roles of catalytic residues in serotonin N-acetyltransferase. J Biol Chem. 2002 May 17; 277(20):18118-26. PMID: 11884405.
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    145. Deo RC, Groft CM, Rajashankar KR, Burley S. Recognition of the rotavirus mRNA 3' consensus by an asymmetric NSP3 homodimer. Cell. 2002 Jan 11; 108(1):71-81. PMID: 11792322.
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    146. Marcotrigiano J, Burley S. Structural biology of eIF4F: mRNA recognition and preparation in eukaryotic translation initiation. Adv Protein Chem. 2002; 61:269-97. PMID: 12461826.
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    147. Ferré-D'Amaré AR, Burley S. [10] Dynamic light scattering in evaluating crystallizability of macromolecules. Methods Enzymol. 1997; 276:157-166. PMID: 27799091.
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