Sheila Podell

Title(s)APPLICATIONS PROGR 3, Center for Marine Biotechnology and Biomedecine
SchoolVc-marine Sciences
Address9500 Gilman Drive #
La Jolla CA 92093
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    1. Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish. mBio. 2024 Mar 27; e0049624. Oliver A, Podell S, Wegley Kelly L, Sparagon WJ, Plominsky AM, Nelson RS, Laurens LML, Augyte S, Sims NA, Nelson CE, Allen EE. PMID: 38534158.
      View in: PubMed   Mentions:    Fields:    
    2. Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish. bioRxiv. 2023 Nov 28. Oliver A, Podell S, Kelly LW, Sparagon WJ, Plominsky AM, Nelson RS, Laurens LML, Augyte S, Sims NA, Nelson CE, Allen EE. PMID: 38076955; PMCID: PMC10705383.
      View in: PubMed   Mentions:
    3. Metagenomic data reveals type I polyketide synthase distributions across biomes. mSystems. 2023 Jun 29; 8(3):e0001223. Singh HW, Creamer KE, Chase AB, Klau LJ, Podell S, Jensen PR. PMID: 37272717; PMCID: PMC10308959.
      View in: PubMed   Mentions: 1     Fields:    
    4. Herbivorous Fish Microbiome Adaptations to Sulfated Dietary Polysaccharides. Appl Environ Microbiol. 2023 05 31; 89(5):e0215422. Podell S, Oliver A, Kelly LW, Sparagon WJ, Plominsky AM, Nelson RS, Laurens LML, Augyte S, Sims NA, Nelson CE, Allen EE. PMID: 37133385; PMCID: PMC10231202.
      View in: PubMed   Mentions: 1     Fields:    Translation:AnimalsCells
    5. Terpene biosynthesis in marine sponge animals. Proc Natl Acad Sci U S A. 2023 02 28; 120(9):e2220934120. Wilson K, de Rond T, Burkhardt I, Steele TS, Schäfer RJB, Podell S, Allen EE, Moore BS. PMID: 36802428; PMCID: PMC9992776.
      View in: PubMed   Mentions: 5     Fields:    Translation:Animals
    6. Metagenomic Data Reveal Type I Polyketide Synthase Distributions Across Biomes. bioRxiv. 2023 Jan 11. Singh HW, Creamer KE, Chase AB, Klau LJ, Podell S, Jensen PR. PMID: 36711755; PMCID: PMC9882069.
      View in: PubMed   Mentions:
    7. The Natural Product Domain Seeker version 2 (NaPDoS2) webtool relates ketosynthase phylogeny to biosynthetic function. J Biol Chem. 2022 10; 298(10):102480. Klau LJ, Podell S, Creamer KE, Demko AM, Singh HW, Allen EE, Moore BS, Ziemert N, Letzel AC, Jensen PR. PMID: 36108739; PMCID: PMC9582728.
      View in: PubMed   Mentions: 15     Fields:    
    8. Phenotypic and transcriptional response of Daphnia pulicaria to the combined effects of temperature and predation. PLoS One. 2022; 17(7):e0265103. Oliver A, Cavalheri HB, Lima TG, Jones NT, Podell S, Zarate D, Allen E, Burton RS, Shurin JB. PMID: 35834446; PMCID: PMC9282536.
      View in: PubMed   Mentions:    Fields:    Translation:Animals
    9. Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom. Sci Rep. 2021 08 02; 11(1):15592. Oliver A, Podell S, Pinowska A, Traller JC, Smith SR, McClure R, Beliaev A, Bohutskyi P, Hill EA, Rabines A, Zheng H, Allen LZ, Kuo A, Grigoriev IV, Allen AE, Hazlebeck D, Allen EE. PMID: 34341414; PMCID: PMC8329260.
      View in: PubMed   Mentions: 6     Fields:    Translation:AnimalsCells
    10. A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes. Microbiome. 2020 06 23; 8(1):97. Podell S, Blanton JM, Oliver A, Schorn MA, Agarwal V, Biggs JS, Moore BS, Allen EE. PMID: 32576248; PMCID: PMC7313196.
      View in: PubMed   Mentions: 12     Fields:    Translation:AnimalsCells
    11. Multi-Omic Profiling of Melophlus Sponges Reveals Diverse Metabolomic and Microbiome Architectures that Are Non-overlapping with Ecological Neighbors. Mar Drugs. 2020 Feb 19; 18(2). Mohanty I, Podell S, Biggs JS, Garg N, Allen EE, Agarwal V. PMID: 32092934; PMCID: PMC7074536.
      View in: PubMed   Mentions: 11     Fields:    Translation:Animals
    12. Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. Nat Commun. 2019 12 02; 10(1):5477. Zhu Q, Mai U, Pfeiffer W, Janssen S, Asnicar F, Sanders JG, Belda-Ferre P, Al-Ghalith GA, Kopylova E, McDonald D, Kosciolek T, Yin JB, Huang S, Salam N, Jiao JY, Wu Z, Xu ZZ, Cantrell K, Yang Y, Sayyari E, Rabiee M, Morton JT, Podell S, Knights D, Li WJ, Huttenhower C, Segata N, Smarr L, Mirarab S, Knight R. PMID: 31792218; PMCID: PMC6889312.
      View in: PubMed   Mentions: 103     Fields:    Translation:Cells
    13. Comparative Genomics of Cyanobacterial Symbionts Reveals Distinct, Specialized Metabolism in Tropical Dysideidae Sponges. mBio. 2019 05 14; 10(3). Schorn MA, Jordan PA, Podell S, Blanton JM, Agarwal V, Biggs JS, Allen EE, Moore BS. PMID: 31088928; PMCID: PMC6520454.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    14. Pangenomic comparison of globally distributed Poribacteria associated with sponge hosts and marine particles. ISME J. 2019 02; 13(2):468-481. Podell S, Blanton JM, Neu A, Agarwal V, Biggs JS, Moore BS, Allen EE. PMID: 30291328; PMCID: PMC6331548.
      View in: PubMed   Mentions: 20     Fields:    Translation:AnimalsCells
    15. Distinctive Archaeal Composition of an Artisanal Crystallizer Pond and Functional Insights Into Salt-Saturated Hypersaline Environment Adaptation. Front Microbiol. 2018; 9:1800. Plominsky AM, Henríquez-Castillo C, Delherbe N, Podell S, Ramirez-Flandes S, Ugalde JA, Santibañez JF, van den Engh G, Hanselmann K, Ulloa O, De la Iglesia R, Allen EE, Trefault N. PMID: 30154761; PMCID: PMC6102401.
      View in: PubMed   Mentions: 8  
    16. Metabolic potential and in situ transcriptomic profiles of previously uncharacterized key microbial groups involved in coupled carbon, nitrogen and sulfur cycling in anoxic marine zones. Environ Microbiol. 2018 08; 20(8):2727-2742. Plominsky AM, Trefault N, Podell S, Blanton JM, De la Iglesia R, Allen EE, von Dassow P, Ulloa O. PMID: 29575531.
      View in: PubMed   Mentions: 10     Fields:    Translation:Cells
    17. The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the candidate superphylum Parcubacteria (OD1). Environ Microbiol. 2017 07; 19(7):2769-2784. León-Zayas R, Peoples L, Biddle JF, Podell S, Novotny M, Cameron J, Lasken RS, Bartlett DH. PMID: 28474498; PMCID: PMC5524542.
      View in: PubMed   Mentions: 28     Fields:    Translation:Cells
    18. Metagenomic discovery of polybrominated diphenyl ether biosynthesis by marine sponges. Nat Chem Biol. 2017 05; 13(5):537-543. Agarwal V, Blanton JM, Podell S, Taton A, Schorn MA, Busch J, Lin Z, Schmidt EW, Jensen PR, Paul VJ, Biggs JS, Golden JW, Allen EE, Moore BS. PMID: 28319100; PMCID: PMC5391271.
      View in: PubMed   Mentions: 54     Fields:    Translation:AnimalsCells
    19. Comparative genomics uncovers the prolific and distinctive metabolic potential of the cyanobacterial genus Moorea. Proc Natl Acad Sci U S A. 2017 03 21; 114(12):3198-3203. Leao T, Castelão G, Korobeynikov A, Monroe EA, Podell S, Glukhov E, Allen EE, Gerwick WH, Gerwick L. PMID: 28265051; PMCID: PMC5373345.
      View in: PubMed   Mentions: 35     Fields:    Translation:Cells
    20. Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype. Biotechnol Biofuels. 2016; 9:258. Traller JC, Cokus SJ, Lopez DA, Gaidarenko O, Smith SR, McCrow JP, Gallaher SD, Podell S, Thompson M, Cook O, Morselli M, Jaroszewicz A, Allen EE, Allen AE, Merchant SS, Pellegrini M, Hildebrand M. PMID: 27933100; PMCID: PMC5124317.
      View in: PubMed   Mentions: 25  
    21. Sequencing rare marine actinomycete genomes reveals high density of unique natural product biosynthetic gene clusters. Microbiology (Reading). 2016 12; 162(12):2075-2086. Schorn MA, Alanjary MM, Aguinaldo K, Korobeynikov A, Podell S, Patin N, Lincecum T, Jensen PR, Ziemert N, Moore BS. PMID: 27902408; PMCID: PMC5756490.
      View in: PubMed   Mentions: 33     Fields:    Translation:Cells
    22. Single cells within the Puerto Rico trench suggest hadal adaptation of microbial lineages. Appl Environ Microbiol. 2015 Dec; 81(24):8265-76. León-Zayas R, Novotny M, Podell S, Shepard CM, Berkenpas E, Nikolenko S, Pevzner P, Lasken RS, Bartlett DH. PMID: 26386059; PMCID: PMC4644660.
      View in: PubMed   Mentions: 19     Fields:    Translation:CellsPHPublic Health
    23. Genome of Methanoregula boonei 6A8 reveals adaptations to oligotrophic peatland environments. Microbiology (Reading). 2015 Aug; 161(8):1572-1581. Bräuer S, Cadillo-Quiroz H, Kyrpides N, Woyke T, Goodwin L, Detter C, Podell S, Yavitt JB, Zinder SH. PMID: 25998264.
      View in: PubMed   Mentions: 6     Fields:    Translation:CellsPHPublic Health
    24. Characterization of cyanobacterial hydrocarbon composition and distribution of biosynthetic pathways. PLoS One. 2014; 9(1):e85140. Coates RC, Podell S, Korobeynikov A, Lapidus A, Pevzner P, Sherman DH, Allen EE, Gerwick L, Gerwick WH. PMID: 24475038; PMCID: PMC3903477.
      View in: PubMed   Mentions: 58     Fields:    Translation:Cells
    25. Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community. ISME J. 2014 May; 8(5):979-90. Podell S, Emerson JB, Jones CM, Ugalde JA, Welch S, Heidelberg KB, Banfield JF, Allen EE. PMID: 24335829; PMCID: PMC3996697.
      View in: PubMed   Mentions: 47     Fields:    Translation:Cells
    26. Draft Genome Sequence of "Candidatus Halobonum tyrrellensis" Strain G22, Isolated from the Hypersaline Waters of Lake Tyrrell, Australia. Genome Announc. 2013 Dec 12; 1(6). Ugalde JA, Narasingarao P, Kuo S, Podell S, Allen EE. PMID: 24336364; PMCID: PMC3861417.
      View in: PubMed   Mentions: 4  
    27. Assembly-driven community genomics of a hypersaline microbial ecosystem. PLoS One. 2013; 8(4):e61692. Podell S, Ugalde JA, Narasingarao P, Banfield JF, Heidelberg KB, Allen EE. PMID: 23637883; PMCID: PMC3630111.
      View in: PubMed   Mentions: 52     Fields:    Translation:CellsPHPublic Health
    28. The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity. PLoS One. 2012; 7(3):e34064. Ziemert N, Podell S, Penn K, Badger JH, Allen E, Jensen PR. PMID: 22479523; PMCID: PMC3315503.
      View in: PubMed   Mentions: 205     Fields:    Translation:CellsPHPublic Health
    29. Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria. Biol Direct. 2011 Oct 10; 6:52. Ugalde JA, Podell S, Narasingarao P, Allen EE. PMID: 21985229; PMCID: PMC3198991.
      View in: PubMed   Mentions: 21     Fields:    Translation:Cells
    30. De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. ISME J. 2012 Jan; 6(1):81-93. Narasingarao P, Podell S, Ugalde JA, Brochier-Armanet C, Emerson JB, Brocks JJ, Heidelberg KB, Banfield JF, Allen EE. PMID: 21716304; PMCID: PMC3246234.
      View in: PubMed   Mentions: 156     Fields:    Translation:Cells
    31. Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula. Proc Natl Acad Sci U S A. 2011 May 24; 108(21):8815-20. Jones AC, Monroe EA, Podell S, Hess WR, Klages S, Esquenazi E, Niessen S, Hoover H, Rothmann M, Lasken RS, Yates JR, Reinhardt R, Kube M, Burkart MD, Allen EE, Dorrestein PC, Gerwick WH, Gerwick L. PMID: 21555588; PMCID: PMC3102346.
      View in: PubMed   Mentions: 41     Fields:    Translation:Cells
    32. The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1. Environ Microbiol. 2010 Oct; 12(10):2738-54. Junier P, Junier T, Podell S, Sims DR, Detter JC, Lykidis A, Han CS, Wigginton NS, Gaasterland T, Bernier-Latmani R. PMID: 20482743; PMCID: PMC5662442.
      View in: PubMed   Mentions: 25     Fields:    Translation:Cells
    33. Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria. ISME J. 2009 Oct; 3(10):1193-203. Penn K, Jenkins C, Nett M, Udwary DW, Gontang EA, McGlinchey RP, Foster B, Lapidus A, Podell S, Allen EE, Moore BS, Jensen PR. PMID: 19474814; PMCID: PMC2749086.
      View in: PubMed   Mentions: 104     Fields:    Translation:Cells
    34. A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm. BMC Bioinformatics. 2008 Oct 07; 9:419. Podell S, Gaasterland T, Allen EE. PMID: 18840280; PMCID: PMC2573894.
      View in: PubMed   Mentions: 21     Fields:    Translation:Cells
    35. Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp. strain SI85-9A1. Appl Environ Microbiol. 2008 May; 74(9):2646-58. Dick GJ, Podell S, Johnson HA, Rivera-Espinoza Y, Bernier-Latmani R, McCarthy JK, Torpey JW, Clement BG, Gaasterland T, Tebo BM. PMID: 18344346; PMCID: PMC2394881.
      View in: PubMed   Mentions: 35     Fields:    Translation:Cells
    36. Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomics. Environ Microbiol. 2008 Mar; 10(3):727-37. Robidart JC, Bench SR, Feldman RA, Novoradovsky A, Podell SB, Gaasterland T, Allen EE, Felbeck H. PMID: 18237306.
      View in: PubMed   Mentions: 63     Fields:    Translation:AnimalsCells
    37. The phagosomal nutrient transporter (Pht) family. Microbiology (Reading). 2008 Jan; 154(Pt 1):42-53. Chen DE, Podell S, Sauer JD, Swanson MS, Saier MH. PMID: 18174124.
      View in: PubMed   Mentions: 25     Fields:    Translation:Cells
    38. The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci U S A. 2007 May 01; 104(18):7705-10. Palenik B, Grimwood J, Aerts A, Rouzé P, Salamov A, Putnam N, Dupont C, Jorgensen R, Derelle E, Rombauts S, Zhou K, Otillar R, Merchant SS, Podell S, Gaasterland T, Napoli C, Gendler K, Manuell A, Tai V, Vallon O, Piganeau G, Jancek S, Heijde M, Jabbari K, Bowler C, Lohr M, Robbens S, Werner G, Dubchak I, Pazour GJ, Ren Q, Paulsen I, Delwiche C, Schmutz J, Rokhsar D, Van de Peer Y, Moreau H, Grigoriev IV. PMID: 17460045; PMCID: PMC1863510.
      View in: PubMed   Mentions: 251     Fields:    Translation:AnimalsCells
    39. Genomic resources for songbird research and their use in characterizing gene expression during brain development. Proc Natl Acad Sci U S A. 2007 Apr 17; 104(16):6834-9. Li X, Wang XJ, Tannenhauser J, Podell S, Mukherjee P, Hertel M, Biane J, Masuda S, Nottebohm F, Gaasterland T. PMID: 17426146; PMCID: PMC1850020.
      View in: PubMed   Mentions: 31     Fields:    Translation:HumansAnimals
    40. DarkHorse: a method for genome-wide prediction of horizontal gene transfer. Genome Biol. 2007; 8(2):R16. Podell S, Gaasterland T. PMID: 17274820; PMCID: PMC1852411.
      View in: PubMed   Mentions: 83     Fields:    
    41. Extra domains in secondary transport carriers and channel proteins. Biochim Biophys Acta. 2006 Oct; 1758(10):1557-79. Barabote RD, Tamang DG, Abeywardena SN, Fallah NS, Fu JY, Lio JK, Mirhosseini P, Pezeshk R, Podell S, Salampessy ML, Thever MD, Saier MH. PMID: 16905115.
      View in: PubMed   Mentions: 19     Fields:    Translation:HumansAnimalsCells
    42. Predicting N-terminal myristoylation sites in plant proteins. BMC Genomics. 2004 Jun 17; 5(1):37. Podell S, Gribskov M. PMID: 15202951; PMCID: PMC449705.
      View in: PubMed   Mentions: 66     Fields:    Translation:AnimalsCells
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