Sheila Podell

Title(s)	APPLICATIONS PROGR 3, Center for Marine Biotechnology and Biomedecine
School	Vc-marine Sciences
Address	9500 Gilman Drive # La Jolla CA 92093
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Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish. mBio. 2024 Mar 27; e0049624. Oliver A, Podell S, Wegley Kelly L, Sparagon WJ, Plominsky AM, Nelson RS, Laurens LML, Augyte S, Sims NA, Nelson CE, Allen EE. PMID: 38534158.

View in: PubMed Mentions: Fields:
Mic Microbiology
Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in Kyphosus fish. bioRxiv. 2023 Nov 28. Oliver A, Podell S, Kelly LW, Sparagon WJ, Plominsky AM, Nelson RS, Laurens LML, Augyte S, Sims NA, Nelson CE, Allen EE. PMID: 38076955; PMCID: PMC10705383.

View in: PubMed Mentions:
Metagenomic data reveals type I polyketide synthase distributions across biomes. mSystems. 2023 Jun 29; 8(3):e0001223. Singh HW, Creamer KE, Chase AB, Klau LJ, Podell S, Jensen PR. PMID: 37272717; PMCID: PMC10308959.

View in: PubMed Mentions: 1 Fields:
Mic Microbiology
Herbivorous Fish Microbiome Adaptations to Sulfated Dietary Polysaccharides. Appl Environ Microbiol. 2023 05 31; 89(5):e0215422. Podell S, Oliver A, Kelly LW, Sparagon WJ, Plominsky AM, Nelson RS, Laurens LML, Augyte S, Sims NA, Nelson CE, Allen EE. PMID: 37133385; PMCID: PMC10231202.

View in: PubMed Mentions: 1 Fields:
Mic Microbiology
Translation:Animals Cells
Terpene biosynthesis in marine sponge animals. Proc Natl Acad Sci U S A. 2023 02 28; 120(9):e2220934120. Wilson K, de Rond T, Burkhardt I, Steele TS, Schäfer RJB, Podell S, Allen EE, Moore BS. PMID: 36802428; PMCID: PMC9992776.

View in: PubMed Mentions: 5 Fields:
Sci Science
Translation:Animals
Metagenomic Data Reveal Type I Polyketide Synthase Distributions Across Biomes. bioRxiv. 2023 Jan 11. Singh HW, Creamer KE, Chase AB, Klau LJ, Podell S, Jensen PR. PMID: 36711755; PMCID: PMC9882069.

View in: PubMed Mentions:
The Natural Product Domain Seeker version 2 (NaPDoS2) webtool relates ketosynthase phylogeny to biosynthetic function. J Biol Chem. 2022 10; 298(10):102480. Klau LJ, Podell S, Creamer KE, Demko AM, Singh HW, Allen EE, Moore BS, Ziemert N, Letzel AC, Jensen PR. PMID: 36108739; PMCID: PMC9582728.

View in: PubMed Mentions: 15 Fields:
Bio Biochemistry
Phenotypic and transcriptional response of Daphnia pulicaria to the combined effects of temperature and predation. PLoS One. 2022; 17(7):e0265103. Oliver A, Cavalheri HB, Lima TG, Jones NT, Podell S, Zarate D, Allen E, Burton RS, Shurin JB. PMID: 35834446; PMCID: PMC9282536.

View in: PubMed Mentions: Fields:
Med Medicine (General)Sci Science
Translation:Animals
Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom. Sci Rep. 2021 08 02; 11(1):15592. Oliver A, Podell S, Pinowska A, Traller JC, Smith SR, McClure R, Beliaev A, Bohutskyi P, Hill EA, Rabines A, Zheng H, Allen LZ, Kuo A, Grigoriev IV, Allen AE, Hazlebeck D, Allen EE. PMID: 34341414; PMCID: PMC8329260.

View in: PubMed Mentions: 6 Fields:
Sci Science
Translation:Animals Cells
A genomic view of trophic and metabolic diversity in clade-specific Lamellodysidea sponge microbiomes. Microbiome. 2020 06 23; 8(1):97. Podell S, Blanton JM, Oliver A, Schorn MA, Agarwal V, Biggs JS, Moore BS, Allen EE. PMID: 32576248; PMCID: PMC7313196.

View in: PubMed Mentions: 12 Fields:
Gen Genetics Mic Microbiology
Translation:Animals Cells
Multi-Omic Profiling of Melophlus Sponges Reveals Diverse Metabolomic and Microbiome Architectures that Are Non-overlapping with Ecological Neighbors. Mar Drugs. 2020 Feb 19; 18(2). Mohanty I, Podell S, Biggs JS, Garg N, Allen EE, Agarwal V. PMID: 32092934; PMCID: PMC7074536.

View in: PubMed Mentions: 11 Fields:
Bio Biology Pha Pharmacology
Translation:Animals
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. Nat Commun. 2019 12 02; 10(1):5477. Zhu Q, Mai U, Pfeiffer W, Janssen S, Asnicar F, Sanders JG, Belda-Ferre P, Al-Ghalith GA, Kopylova E, McDonald D, Kosciolek T, Yin JB, Huang S, Salam N, Jiao JY, Wu Z, Xu ZZ, Cantrell K, Yang Y, Sayyari E, Rabiee M, Morton JT, Podell S, Knights D, Li WJ, Huttenhower C, Segata N, Smarr L, Mirarab S, Knight R. PMID: 31792218; PMCID: PMC6889312.

View in: PubMed Mentions: 103 Fields:
Bio Biology Sci Science
Translation:Cells
Comparative Genomics of Cyanobacterial Symbionts Reveals Distinct, Specialized Metabolism in Tropical Dysideidae Sponges. mBio. 2019 05 14; 10(3). Schorn MA, Jordan PA, Podell S, Blanton JM, Agarwal V, Biggs JS, Allen EE, Moore BS. PMID: 31088928; PMCID: PMC6520454.

View in: PubMed Mentions: 14 Fields:
Mic Microbiology
Translation:Animals Cells
Pangenomic comparison of globally distributed Poribacteria associated with sponge hosts and marine particles. ISME J. 2019 02; 13(2):468-481. Podell S, Blanton JM, Neu A, Agarwal V, Biggs JS, Moore BS, Allen EE. PMID: 30291328; PMCID: PMC6331548.

View in: PubMed Mentions: 20 Fields:
Env Environmental Health Mic Microbiology
Translation:Animals Cells
Distinctive Archaeal Composition of an Artisanal Crystallizer Pond and Functional Insights Into Salt-Saturated Hypersaline Environment Adaptation. Front Microbiol. 2018; 9:1800. Plominsky AM, Henríquez-Castillo C, Delherbe N, Podell S, Ramirez-Flandes S, Ugalde JA, Santibañez JF, van den Engh G, Hanselmann K, Ulloa O, De la Iglesia R, Allen EE, Trefault N. PMID: 30154761; PMCID: PMC6102401.

View in: PubMed Mentions: 8
Metabolic potential and in situ transcriptomic profiles of previously uncharacterized key microbial groups involved in coupled carbon, nitrogen and sulfur cycling in anoxic marine zones. Environ Microbiol. 2018 08; 20(8):2727-2742. Plominsky AM, Trefault N, Podell S, Blanton JM, De la Iglesia R, Allen EE, von Dassow P, Ulloa O. PMID: 29575531.

View in: PubMed Mentions: 10 Fields:
Env Environmental Health Mic Microbiology
Translation:Cells
The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the candidate superphylum Parcubacteria (OD1). Environ Microbiol. 2017 07; 19(7):2769-2784. León-Zayas R, Peoples L, Biddle JF, Podell S, Novotny M, Cameron J, Lasken RS, Bartlett DH. PMID: 28474498; PMCID: PMC5524542.

View in: PubMed Mentions: 28 Fields:
Env Environmental Health Mic Microbiology
Translation:Cells
Metagenomic discovery of polybrominated diphenyl ether biosynthesis by marine sponges. Nat Chem Biol. 2017 05; 13(5):537-543. Agarwal V, Blanton JM, Podell S, Taton A, Schorn MA, Busch J, Lin Z, Schmidt EW, Jensen PR, Paul VJ, Biggs JS, Golden JW, Allen EE, Moore BS. PMID: 28319100; PMCID: PMC5391271.

View in: PubMed Mentions: 54 Fields:
Bio Biology Che Chemistry
Translation:Animals Cells
Comparative genomics uncovers the prolific and distinctive metabolic potential of the cyanobacterial genus Moorea. Proc Natl Acad Sci U S A. 2017 03 21; 114(12):3198-3203. Leao T, Castelão G, Korobeynikov A, Monroe EA, Podell S, Glukhov E, Allen EE, Gerwick WH, Gerwick L. PMID: 28265051; PMCID: PMC5373345.

View in: PubMed Mentions: 35 Fields:
Sci Science
Translation:Cells
Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype. Biotechnol Biofuels. 2016; 9:258. Traller JC, Cokus SJ, Lopez DA, Gaidarenko O, Smith SR, McCrow JP, Gallaher SD, Podell S, Thompson M, Cook O, Morselli M, Jaroszewicz A, Allen EE, Allen AE, Merchant SS, Pellegrini M, Hildebrand M. PMID: 27933100; PMCID: PMC5124317.

View in: PubMed Mentions: 25
Sequencing rare marine actinomycete genomes reveals high density of unique natural product biosynthetic gene clusters. Microbiology (Reading). 2016 12; 162(12):2075-2086. Schorn MA, Alanjary MM, Aguinaldo K, Korobeynikov A, Podell S, Patin N, Lincecum T, Jensen PR, Ziemert N, Moore BS. PMID: 27902408; PMCID: PMC5756490.

View in: PubMed Mentions: 33 Fields:
Mic Microbiology
Translation:Cells
Single cells within the Puerto Rico trench suggest hadal adaptation of microbial lineages. Appl Environ Microbiol. 2015 Dec; 81(24):8265-76. León-Zayas R, Novotny M, Podell S, Shepard CM, Berkenpas E, Nikolenko S, Pevzner P, Lasken RS, Bartlett DH. PMID: 26386059; PMCID: PMC4644660.

View in: PubMed Mentions: 19 Fields:
Mic Microbiology
Translation:Cells PHPublic Health
Genome of Methanoregula boonei 6A8 reveals adaptations to oligotrophic peatland environments. Microbiology (Reading). 2015 Aug; 161(8):1572-1581. Bräuer S, Cadillo-Quiroz H, Kyrpides N, Woyke T, Goodwin L, Detter C, Podell S, Yavitt JB, Zinder SH. PMID: 25998264.

View in: PubMed Mentions: 6 Fields:
Mic Microbiology
Translation:Cells PHPublic Health
Characterization of cyanobacterial hydrocarbon composition and distribution of biosynthetic pathways. PLoS One. 2014; 9(1):e85140. Coates RC, Podell S, Korobeynikov A, Lapidus A, Pevzner P, Sherman DH, Allen EE, Gerwick L, Gerwick WH. PMID: 24475038; PMCID: PMC3903477.

View in: PubMed Mentions: 58 Fields:
Med Medicine (General)Sci Science
Translation:Cells
Draft Genome Sequence of "Candidatus Halobonum tyrrellensis" Strain G22, Isolated from the Hypersaline Waters of Lake Tyrrell, Australia. Genome Announc. 2013 Dec 12; 1(6). Ugalde JA, Narasingarao P, Kuo S, Podell S, Allen EE. PMID: 24336364; PMCID: PMC3861417.

View in: PubMed Mentions: 4
Seasonal fluctuations in ionic concentrations drive microbial succession in a hypersaline lake community. ISME J. 2014 May; 8(5):979-90. Podell S, Emerson JB, Jones CM, Ugalde JA, Welch S, Heidelberg KB, Banfield JF, Allen EE. PMID: 24335829; PMCID: PMC3996697.

View in: PubMed Mentions: 47 Fields:
Env Environmental Health Mic Microbiology
Translation:Cells
Assembly-driven community genomics of a hypersaline microbial ecosystem. PLoS One. 2013; 8(4):e61692. Podell S, Ugalde JA, Narasingarao P, Banfield JF, Heidelberg KB, Allen EE. PMID: 23637883; PMCID: PMC3630111.

View in: PubMed Mentions: 52 Fields:
Med Medicine (General)Sci Science
Translation:Cells PHPublic Health
The natural product domain seeker NaPDoS: a phylogeny based bioinformatic tool to classify secondary metabolite gene diversity. PLoS One. 2012; 7(3):e34064. Ziemert N, Podell S, Penn K, Badger JH, Allen E, Jensen PR. PMID: 22479523; PMCID: PMC3315503.

View in: PubMed Mentions: 205 Fields:
Med Medicine (General)Sci Science
Translation:Cells PHPublic Health
Xenorhodopsins, an enigmatic new class of microbial rhodopsins horizontally transferred between archaea and bacteria. Biol Direct. 2011 Oct 10; 6:52. Ugalde JA, Podell S, Narasingarao P, Allen EE. PMID: 21985229; PMCID: PMC3198991.

View in: PubMed Mentions: 21 Fields:
Bio Biology
Translation:Cells
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. ISME J. 2012 Jan; 6(1):81-93. Narasingarao P, Podell S, Ugalde JA, Brochier-Armanet C, Emerson JB, Brocks JJ, Heidelberg KB, Banfield JF, Allen EE. PMID: 21716304; PMCID: PMC3246234.

View in: PubMed Mentions: 156 Fields:
Env Environmental Health Mic Microbiology
Translation:Cells
Genomic insights into the physiology and ecology of the marine filamentous cyanobacterium Lyngbya majuscula. Proc Natl Acad Sci U S A. 2011 May 24; 108(21):8815-20. Jones AC, Monroe EA, Podell S, Hess WR, Klages S, Esquenazi E, Niessen S, Hoover H, Rothmann M, Lasken RS, Yates JR, Reinhardt R, Kube M, Burkart MD, Allen EE, Dorrestein PC, Gerwick WH, Gerwick L. PMID: 21555588; PMCID: PMC3102346.

View in: PubMed Mentions: 41 Fields:
Sci Science
Translation:Cells
The genome of the Gram-positive metal- and sulfate-reducing bacterium Desulfotomaculum reducens strain MI-1. Environ Microbiol. 2010 Oct; 12(10):2738-54. Junier P, Junier T, Podell S, Sims DR, Detter JC, Lykidis A, Han CS, Wigginton NS, Gaasterland T, Bernier-Latmani R. PMID: 20482743; PMCID: PMC5662442.

View in: PubMed Mentions: 25 Fields:
Env Environmental Health Mic Microbiology
Translation:Cells
Genomic islands link secondary metabolism to functional adaptation in marine Actinobacteria. ISME J. 2009 Oct; 3(10):1193-203. Penn K, Jenkins C, Nett M, Udwary DW, Gontang EA, McGlinchey RP, Foster B, Lapidus A, Podell S, Allen EE, Moore BS, Jensen PR. PMID: 19474814; PMCID: PMC2749086.

View in: PubMed Mentions: 104 Fields:
Env Environmental Health Mic Microbiology
Translation:Cells
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm. BMC Bioinformatics. 2008 Oct 07; 9:419. Podell S, Gaasterland T, Allen EE. PMID: 18840280; PMCID: PMC2573894.

View in: PubMed Mentions: 21 Fields:
Com Computational Biology
Translation:Cells
Genomic insights into Mn(II) oxidation by the marine alphaproteobacterium Aurantimonas sp. strain SI85-9A1. Appl Environ Microbiol. 2008 May; 74(9):2646-58. Dick GJ, Podell S, Johnson HA, Rivera-Espinoza Y, Bernier-Latmani R, McCarthy JK, Torpey JW, Clement BG, Gaasterland T, Tebo BM. PMID: 18344346; PMCID: PMC2394881.

View in: PubMed Mentions: 35 Fields:
Mic Microbiology
Translation:Cells
Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomics. Environ Microbiol. 2008 Mar; 10(3):727-37. Robidart JC, Bench SR, Feldman RA, Novoradovsky A, Podell SB, Gaasterland T, Allen EE, Felbeck H. PMID: 18237306.

View in: PubMed Mentions: 63 Fields:
Env Environmental Health Mic Microbiology
Translation:Animals Cells
The phagosomal nutrient transporter (Pht) family. Microbiology (Reading). 2008 Jan; 154(Pt 1):42-53. Chen DE, Podell S, Sauer JD, Swanson MS, Saier MH. PMID: 18174124.

View in: PubMed Mentions: 25 Fields:
Mic Microbiology
Translation:Cells
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation. Proc Natl Acad Sci U S A. 2007 May 01; 104(18):7705-10. Palenik B, Grimwood J, Aerts A, Rouzé P, Salamov A, Putnam N, Dupont C, Jorgensen R, Derelle E, Rombauts S, Zhou K, Otillar R, Merchant SS, Podell S, Gaasterland T, Napoli C, Gendler K, Manuell A, Tai V, Vallon O, Piganeau G, Jancek S, Heijde M, Jabbari K, Bowler C, Lohr M, Robbens S, Werner G, Dubchak I, Pazour GJ, Ren Q, Paulsen I, Delwiche C, Schmutz J, Rokhsar D, Van de Peer Y, Moreau H, Grigoriev IV. PMID: 17460045; PMCID: PMC1863510.

View in: PubMed Mentions: 251 Fields:
Sci Science
Translation:Animals Cells
Genomic resources for songbird research and their use in characterizing gene expression during brain development. Proc Natl Acad Sci U S A. 2007 Apr 17; 104(16):6834-9. Li X, Wang XJ, Tannenhauser J, Podell S, Mukherjee P, Hertel M, Biane J, Masuda S, Nottebohm F, Gaasterland T. PMID: 17426146; PMCID: PMC1850020.

View in: PubMed Mentions: 31 Fields:
Sci Science
Translation:Humans Animals
DarkHorse: a method for genome-wide prediction of horizontal gene transfer. Genome Biol. 2007; 8(2):R16. Podell S, Gaasterland T. PMID: 17274820; PMCID: PMC1852411.

View in: PubMed Mentions: 83 Fields:
Gen Genetics
Extra domains in secondary transport carriers and channel proteins. Biochim Biophys Acta. 2006 Oct; 1758(10):1557-79. Barabote RD, Tamang DG, Abeywardena SN, Fallah NS, Fu JY, Lio JK, Mirhosseini P, Pezeshk R, Podell S, Salampessy ML, Thever MD, Saier MH. PMID: 16905115.

View in: PubMed Mentions: 19 Fields:
Bio Biochemistry Bio Biophysics
Translation:Humans Animals Cells
Predicting N-terminal myristoylation sites in plant proteins. BMC Genomics. 2004 Jun 17; 5(1):37. Podell S, Gribskov M. PMID: 15202951; PMCID: PMC449705.

View in: PubMed Mentions: 66 Fields:
Gen Genetics
Translation:Animals Cells