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Shannon Ellis

Title(s)Assistant Teaching Professor, Cognitive Science
SchoolVc-academic Affairs
Address9500 Gilman Drive #0515
La Jolla CA 92093
Phone000-000-NULL
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Integrated Transcriptomic and Proteomic Analysis of Primary Human Umbilical Vein Endothelial Cells. Proteomics. 2019 08; 19(15):e1800315. Madugundu AK, Na CH, Nirujogi RS, Renuse S, Kim KP, Burns KH, Wilks C, Langmead B, Ellis SE, Collado-Torres L, Halushka MK, Kim MS, Pandey A. PMID: 30983154.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. Improving the value of public RNA-seq expression data by phenotype prediction. Nucleic Acids Res. 2018 05 18; 46(9):e54. Ellis SE, Collado-Torres L, Jaffe A, Leek JT. PMID: 29514223.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    3. Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder. Nat Commun. 2017 10 24; 8(1):1011. Andrews SV, Ellis SE, Bakulski KM, Sheppard B, Croen LA, Hertz-Picciotto I, Newschaffer CJ, Feinberg AP, Arking DE, Ladd-Acosta C, Fallin MD. PMID: 29066808.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    4. Reproducible RNA-seq analysis using recount2. Nat Biotechnol. 2017 04 11; 35(4):319-321. Collado-Torres L, Nellore A, Kammers K, Ellis SE, Taub MA, Hansen KD, Jaffe AE, Langmead B, Leek JT. PMID: 28398307.
      View in: PubMed   Mentions: 40     Fields:    Translation:Humans
    5. Exaggerated CpH methylation in the autism-affected brain. Mol Autism. 2017; 8:6. Ellis SE, Gupta S, Moes A, West AB, Arking DE. PMID: 28316770.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    6. Transcriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism. Nat Commun. 2014 Dec 10; 5:5748. Gupta S, Ellis SE, Ashar FN, Moes A, Bader JS, Zhan J, West AB, Arking DE. PMID: 25494366.
      View in: PubMed   Mentions: 120     Fields:    
    7. RNA-Seq optimization with eQTL gold standards. BMC Genomics. 2013 Dec 17; 14:892. Ellis SE, Gupta S, Ashar FN, Bader JS, West AB, Arking DE. PMID: 24341889.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
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