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    Seungjin Na

    TitlePostdoctoral Scholar
    SchoolUniversity of California, San Diego
    DepartmentComputer Science and Engineering
    Address9500 Gilman Drive #0404
    CA La Jolla 92093
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Na S, Payne SH, Bandeira N. Multi-species Identification of Polymorphic Peptide Variants via Propagation in Spectral Networks. Mol Cell Proteomics. 2016 Nov; 15(11):3501-3512. PMID: 27609420.
        View in: PubMed
      2. Woo S, Cha SW, Bonissone S, Na S, Tabb DL, Pevzner PA, Bafna V. Advanced Proteogenomic Analysis Reveals Multiple Peptide Mutations and Complex Immunoglobulin Peptides in Colon Cancer. J Proteome Res. 2015 Sep 04; 14(9):3555-67. PMID: 26139413; PMCID: PMC4868822.
      3. Na S, Paek E, Choi JS, Kim D, Lee SJ, Kwon J. Characterization of disulfide bonds by planned digestion and tandem mass spectrometry. Mol Biosyst. 2015 Apr; 11(4):1156-64. PMID: 25703060; PMCID: PMC4410109.
      4. Woo S, Cha SW, Na S, Guest C, Liu T, Smith RD, Rodland KD, Payne S, Bafna V. Proteogenomic strategies for identification of aberrant cancer peptides using large-scale next-generation sequencing data. Proteomics. 2014 Dec; 14(23-24):2719-30. PMID: 25263569; PMCID: PMC4256132.
      5. Na S, Paek E. Software eyes for protein post-translational modifications. Mass Spectrom Rev. 2015 Mar-Apr; 34(2):133-47. PMID: 24889695.
        View in: PubMed
      6. Kim K, Park SJ, Na S, Kim JS, Choi H, Kim YK, Paek E, Lee C. Reinvestigation of aminoacyl-tRNA synthetase core complex by affinity purification-mass spectrometry reveals TARSL2 as a potential member of the complex. PLoS One. 2013; 8(12):e81734. PMID: 24312579; PMCID: PMC3846882.
      7. Kim JW, Lee S, Park K, Na S, Paek E, Park HS, Park H, Lee KJ, Jeong J, Kim HY. Monoisotopic mass determination algorithm for selenocysteine-containing polypeptides from mass spectrometric data based on theoretical modeling of isotopic peak intensity ratios. J Proteome Res. 2012 Sep 07; 11(9):4488-98. PMID: 22779694.
        View in: PubMed
      8. Na S, Bandeira N, Paek E. Fast multi-blind modification search through tandem mass spectrometry. Mol Cell Proteomics. 2012 Apr; 11(4):M111.010199. PMID: 22186716; PMCID: PMC3322561.
      9. Yoon JY, Yeom J, Lee H, Kim K, Na S, Park K, Paek E, Lee C. High-throughput peptide quantification using mTRAQ reagent triplex. BMC Bioinformatics. 2011 Feb 15; 12 Suppl 1:S46. PMID: 21342578; PMCID: PMC3044303.
      10. Jeong J, Jung Y, Na S, Jeong J, Lee E, Kim MS, Choi S, Shin DH, Paek E, Lee HY, Lee KJ. Novel oxidative modifications in redox-active cysteine residues. Mol Cell Proteomics. 2011 Mar; 10(3):M110.000513. PMID: 21148632; PMCID: PMC3047142.
      11. Joo JW, Na S, Baek JH, Lee C, Paek E. Target-Decoy with Mass Binning: a simple and effective validation method for shotgun proteomics using high resolution mass spectrometry. J Proteome Res. 2010 Feb 05; 9(2):1150-6. PMID: 19908919.
        View in: PubMed
      12. Choi S, Jeong J, Na S, Lee HS, Kim HY, Lee KJ, Paek E. New algorithm for the identification of intact disulfide linkages based on fragmentation characteristics in tandem mass spectra. J Proteome Res. 2010 Jan; 9(1):626-35. PMID: 19902913.
        View in: PubMed
      13. Na S, Paek E. Prediction of novel modifications by unrestrictive search of tandem mass spectra. J Proteome Res. 2009 Oct; 8(10):4418-27. PMID: 19658439.
        View in: PubMed
      14. Na S, Jeong J, Park H, Lee KJ, Paek E. Unrestrictive identification of multiple post-translational modifications from tandem mass spectrometry using an error-tolerant algorithm based on an extended sequence tag approach. Mol Cell Proteomics. 2008 Dec; 7(12):2452-63. PMID: 18701446.
        View in: PubMed
      15. Na S, Paek E, Lee C. CIFTER: automated charge-state determination for peptide tandem mass spectra. Anal Chem. 2008 Mar 01; 80(5):1520-8. PMID: 18247484.
        View in: PubMed
      16. Na S, Paek E. Quality assessment of tandem mass spectra based on cumulative intensity normalization. J Proteome Res. 2006 Dec; 5(12):3241-8. PMID: 17137325.
        View in: PubMed
      17. Kim S, Na S, Sim JW, Park H, Jeong J, Kim H, Seo Y, Seo J, Lee KJ, Paek E. MODi: a powerful and convenient web server for identifying multiple post-translational peptide modifications from tandem mass spectra. Nucleic Acids Res. 2006 Jul 01; 34(Web Server issue):W258-63. PMID: 16845006; PMCID: PMC1538808.
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