Sebastian Bittrich

Title(s)Sr Bioinfo Analyst, CACSE
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. RCSB Protein Data Bank 1D3D module: Displaying positional features on macromolecular assemblies. Bioinformatics. 2022 May 11. Segura J, Rose Y, Bittrich S, Burley SK, Duarte JM. PMID: 35543462; PMCID: PMC9191206.
      View in: PubMed   Mentions:    Fields:    
    2. RCSB Protein Data Bank: Improved Annotation, Search, and Visualization of Membrane Protein Structures Archived in the PDB. Bioinformatics. 2021 Dec 02. Bittrich S, Rose Y, Segura J, Lowe R, Westbrook JD, Duarte JM, Burley SK. PMID: 34864908; PMCID: PMC8826025.
      View in: PubMed   Mentions: 1     Fields:    
    3. RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D. Protein Sci. 2022 01; 31(1):187-208. Burley SK, Bhikadiya C, Bi C, Bittrich S, Chen L, Crichlow GV, Duarte JM, Dutta S, Fayazi M, Feng Z, Flatt JW, Ganesan SJ, Goodsell DS, Ghosh S, Kramer Green R, Guranovic V, Henry J, Hudson BP, Lawson CL, Liang Y, Lowe R, Peisach E, Persikova I, Piehl DW, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Vallat B, Voigt M, Westbrook JD, Whetstone S, Young JY, Zardecki C. PMID: 34676613; PMCID: PMC8740825.
      View in: PubMed   Mentions: 6     Fields:    
    4. Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic Acids Res. 2021 07 02; 49(W1):W431-W437. Sehnal D, Bittrich S, Deshpande M, Svobodová R, Berka K, Bazgier V, Velankar S, Burley SK, Koca J, Rose AS. PMID: 33956157; PMCID: PMC8262734.
      View in: PubMed   Mentions: 103     Fields:    Translation:Cells
    5. RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. Nucleic Acids Res. 2021 01 08; 49(D1):D437-D451. Burley SK, Bhikadiya C, Bi C, Bittrich S, Chen L, Crichlow GV, Christie CH, Dalenberg K, Di Costanzo L, Duarte JM, Dutta S, Feng Z, Ganesan S, Goodsell DS, Ghosh S, Green RK, Guranovic V, Guzenko D, Hudson BP, Lawson CL, Liang Y, Lowe R, Namkoong H, Peisach E, Persikova I, Randle C, Rose A, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Tao YP, Voigt M, Westbrook JD, Young JY, Zardecki C, Zhuravleva M. PMID: 33211854; PMCID: PMC7779003.
      View in: PubMed   Mentions: 179     Fields:    Translation:HumansCellsPHPublic Health
    6. Real-time structural motif searching in proteins using an inverted index strategy. PLoS Comput Biol. 2020 12; 16(12):e1008502. Bittrich S, Burley SK, Rose AS. PMID: 33284792; PMCID: PMC7746303.
      View in: PubMed   Mentions: 3     Fields:    Translation:Cells
    7. RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive. J Mol Biol. 2021 05 28; 433(11):166704. Rose Y, Duarte JM, Lowe R, Segura J, Bi C, Bhikadiya C, Chen L, Rose AS, Bittrich S, Burley SK, Westbrook JD. PMID: 33186584; PMCID: PMC9093041.
      View in: PubMed   Mentions: 18     Fields:    
    8. BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management. PLoS Comput Biol. 2020 10; 16(10):e1008247. Sehnal D, Bittrich S, Velankar S, Koca J, Svobodová R, Burley SK, Rose AS. PMID: 33075050; PMCID: PMC7595629.
      View in: PubMed   Mentions: 4     Fields:    
    9. The structural basis of the genetic code: amino acid recognition by aminoacyl-tRNA synthetases. Sci Rep. 2020 07 28; 10(1):12647. Kaiser F, Krautwurst S, Salentin S, Haupt VJ, Leberecht C, Bittrich S, Labudde D, Schroeder M. PMID: 32724042; PMCID: PMC7387524.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    10. StructureDistiller: Structural relevance scoring identifies the most informative entries of a contact map. Sci Rep. 2019 12 06; 9(1):18517. Bittrich S, Schroeder M, Labudde D. PMID: 31811259; PMCID: PMC6898053.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    11. Structural change in GadD2 of Listeria monocytogenes field isolates supports nisin resistance. Int J Food Microbiol. 2019 Sep 16; 305:108240. Szendy M, Kalkhof S, Bittrich S, Kaiser F, Leberecht C, Labudde D, Noll M. PMID: 31202151.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    12. Application of an interpretable classification model on Early Folding Residues during protein folding. BioData Min. 2019; 12:1. Bittrich S, Kaden M, Leberecht C, Kaiser F, Villmann T, Labudde D. PMID: 30627219; PMCID: PMC6321665.
      View in: PubMed   Mentions: 5  
    13. Characterizing the relation of functional and Early Folding Residues in protein structures using the example of aminoacyl-tRNA synthetases. PLoS One. 2018; 13(10):e0206369. Bittrich S, Schroeder M, Labudde D. PMID: 30376559; PMCID: PMC6207335.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    14. Backbone Brackets and Arginine Tweezers delineate Class I and Class II aminoacyl tRNA synthetases. PLoS Comput Biol. 2018 04; 14(4):e1006101. Kaiser F, Bittrich S, Salentin S, Leberecht C, Haupt VJ, Krautwurst S, Schroeder M, Labudde D. PMID: 29659563; PMCID: PMC5919687.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    15. SequenceCEROSENE: a computational method and web server to visualize spatial residue neighborhoods at the sequence level. BioData Min. 2016; 9:6. Heinke F, Bittrich S, Kaiser F, Labudde D. PMID: 26819632; PMCID: PMC4728770.
      View in: PubMed   Mentions:
    16. Fit3D: a web application for highly accurate screening of spatial residue patterns in protein structure data. Bioinformatics. 2016 03 01; 32(5):792-4. Kaiser F, Eisold A, Bittrich S, Labudde D. PMID: 26519504.
      View in: PubMed   Mentions: 4     Fields:    
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