Sebastian Bittrich

Title(s)	Sr Bioinfo Analyst, CACSE
School	Vc-academic Affairs
Address	9500 Gilman Drive # La Jolla CA 92093
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Bibliographic

Publications

Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.

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Describing and Sharing Molecular Visualizations Using the MolViewSpec Toolkit. Curr Protoc. 2024 Jul; 4(7):e1099. Bittrich S, Midlik A, Varadi M, Velankar S, Burley SK, Young JY, Sehnal D, Vallat B. PMID: 39024028.

View in: PubMed Mentions: Fields:
Sci Science
RCSB protein Data Bank: exploring protein 3D similarities via comprehensive structural alignments. Bioinformatics. 2024 Jun 03; 40(6). Bittrich S, Segura J, Duarte JM, Burley SK, Rose Y. PMID: 38870521; PMCID: PMC11212067.

View in: PubMed Mentions: Fields:
Com Computational Biology
Translation:Cells
RCSB Protein Data Bank: visualizing groups of experimentally determined PDB structures alongside computed structure models of proteins. Front Bioinform. 2023; 3:1311287. Segura J, Rose Y, Bi C, Duarte J, Burley SK, Bittrich S. PMID: 38111685; PMCID: PMC10726007.

View in: PubMed Mentions:
RCSB Protein Data Bank: Efficient Searching and Simultaneous Access to One Million Computed Structure Models Alongside the PDB Structures Enabled by Architectural Advances. J Mol Biol. 2023 07 15; 435(14):167994. Bittrich S, Bhikadiya C, Bi C, Chao H, Duarte JM, Dutta S, Fayazi M, Henry J, Khokhriakov I, Lowe R, Piehl DW, Segura J, Vallat B, Voigt M, Westbrook JD, Burley SK, Rose Y. PMID: 36738985.

View in: PubMed Mentions: 7 Fields:
Mol Molecular Biology
Translation:Humans Cells
RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning. Nucleic Acids Res. 2023 01 06; 51(D1):D488-D508. Burley SK, Bhikadiya C, Bi C, Bittrich S, Chao H, Chen L, Craig PA, Crichlow GV, Dalenberg K, Duarte JM, Dutta S, Fayazi M, Feng Z, Flatt JW, Ganesan S, Ghosh S, Goodsell DS, Green RK, Guranovic V, Henry J, Hudson BP, Khokhriakov I, Lawson CL, Liang Y, Lowe R, Peisach E, Persikova I, Piehl DW, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Vallat B, Voigt M, Webb B, Westbrook JD, Whetstone S, Young JY, Zalevsky A, Zardecki C. PMID: 36420884; PMCID: PMC9825554.

View in: PubMed Mentions: 120 Fields:
Bio Biochemistry
Translation:Cells
RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D. Protein Sci. 2022 12; 31(12):e4482. Burley SK, Bhikadiya C, Bi C, Bittrich S, Chao H, Chen L, Craig PA, Crichlow GV, Dalenberg K, Duarte JM, Dutta S, Fayazi M, Feng Z, Flatt JW, Ganesan SJ, Ghosh S, Goodsell DS, Green RK, Guranovic V, Henry J, Hudson BP, Khokhriakov I, Lawson CL, Liang Y, Lowe R, Peisach E, Persikova I, Piehl DW, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Vallat B, Voigt M, Webb B, Westbrook JD, Whetstone S, Young JY, Zalevsky A, Zardecki C. PMID: 36281733; PMCID: PMC9667899.

View in: PubMed Mentions: 16 Fields:
Bio Biochemistry
Translation:Humans Cells
Assessing PDB macromolecular crystal structure confidence at the individual amino acid residue level. Structure. 2022 10 06; 30(10):1385-1394.e3. Shao C, Bittrich S, Wang S, Burley SK. PMID: 36049478; PMCID: PMC9547844.

View in: PubMed Mentions: 11 Fields:
Bio Biochemistry Bio Biotechnology Mol Molecular Biology
Translation:Humans Cells
RCSB Protein Data Bank 1D3D module: displaying positional features on macromolecular assemblies. Bioinformatics. 2022 06 13; 38(12):3304-3305. Segura J, Rose Y, Bittrich S, Burley SK, Duarte JM. PMID: 35543462; PMCID: PMC9191206.

View in: PubMed Mentions: 4 Fields:
Com Computational Biology
RCSB Protein Data Bank: improved annotation, search and visualization of membrane protein structures archived in the PDB. Bioinformatics. 2022 02 07; 38(5):1452-1454. Bittrich S, Rose Y, Segura J, Lowe R, Westbrook JD, Duarte JM, Burley SK. PMID: 34864908; PMCID: PMC8826025.

View in: PubMed Mentions: 27 Fields:
Com Computational Biology
Translation:Humans Cells
RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D. Protein Sci. 2022 01; 31(1):187-208. Burley SK, Bhikadiya C, Bi C, Bittrich S, Chen L, Crichlow GV, Duarte JM, Dutta S, Fayazi M, Feng Z, Flatt JW, Ganesan SJ, Goodsell DS, Ghosh S, Kramer Green R, Guranovic V, Henry J, Hudson BP, Lawson CL, Liang Y, Lowe R, Peisach E, Persikova I, Piehl DW, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Vallat B, Voigt M, Westbrook JD, Whetstone S, Young JY, Zardecki C. PMID: 34676613; PMCID: PMC8740825.

View in: PubMed Mentions: 49 Fields:
Bio Biochemistry
Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures. Nucleic Acids Res. 2021 07 02; 49(W1):W431-W437. Sehnal D, Bittrich S, Deshpande M, Svobodová R, Berka K, Bazgier V, Velankar S, Burley SK, Koca J, Rose AS. PMID: 33956157; PMCID: PMC8262734.

View in: PubMed Mentions: 335 Fields:
Bio Biochemistry
Translation:Cells
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. Nucleic Acids Res. 2021 01 08; 49(D1):D437-D451. Burley SK, Bhikadiya C, Bi C, Bittrich S, Chen L, Crichlow GV, Christie CH, Dalenberg K, Di Costanzo L, Duarte JM, Dutta S, Feng Z, Ganesan S, Goodsell DS, Ghosh S, Green RK, Guranovic V, Guzenko D, Hudson BP, Lawson CL, Liang Y, Lowe R, Namkoong H, Peisach E, Persikova I, Randle C, Rose A, Rose Y, Sali A, Segura J, Sekharan M, Shao C, Tao YP, Voigt M, Westbrook JD, Young JY, Zardecki C, Zhuravleva M. PMID: 33211854; PMCID: PMC7779003.

View in: PubMed Mentions: 500 Fields:
Bio Biochemistry
Translation:Humans Cells PHPublic Health
Real-time structural motif searching in proteins using an inverted index strategy. PLoS Comput Biol. 2020 12; 16(12):e1008502. Bittrich S, Burley SK, Rose AS. PMID: 33284792; PMCID: PMC7746303.

View in: PubMed Mentions: 12 Fields:
Com Computational Biology
Translation:Cells
RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive. J Mol Biol. 2021 05 28; 433(11):166704. Rose Y, Duarte JM, Lowe R, Segura J, Bi C, Bhikadiya C, Chen L, Rose AS, Bittrich S, Burley SK, Westbrook JD. PMID: 33186584; PMCID: PMC9093041.

View in: PubMed Mentions: 54 Fields:
Mol Molecular Biology
BinaryCIF and CIFTools-Lightweight, efficient and extensible macromolecular data management. PLoS Comput Biol. 2020 10; 16(10):e1008247. Sehnal D, Bittrich S, Velankar S, Koca J, Svobodová R, Burley SK, Rose AS. PMID: 33075050; PMCID: PMC7595629.

View in: PubMed Mentions: 16 Fields:
Com Computational Biology
The structural basis of the genetic code: amino acid recognition by aminoacyl-tRNA synthetases. Sci Rep. 2020 07 28; 10(1):12647. Kaiser F, Krautwurst S, Salentin S, Haupt VJ, Leberecht C, Bittrich S, Labudde D, Schroeder M. PMID: 32724042; PMCID: PMC7387524.

View in: PubMed Mentions: 15 Fields:
Sci Science
Translation:Humans Animals Cells
StructureDistiller: Structural relevance scoring identifies the most informative entries of a contact map. Sci Rep. 2019 12 06; 9(1):18517. Bittrich S, Schroeder M, Labudde D. PMID: 31811259; PMCID: PMC6898053.

View in: PubMed Mentions: 3 Fields:
Sci Science
Translation:Animals Cells
Structural change in GadD2 of Listeria monocytogenes field isolates supports nisin resistance. Int J Food Microbiol. 2019 Sep 16; 305:108240. Szendy M, Kalkhof S, Bittrich S, Kaiser F, Leberecht C, Labudde D, Noll M. PMID: 31202151.

View in: PubMed Mentions: 6 Fields:
Mic Microbiology Nut Nutritional Sciences
Translation:Humans Cells
Application of an interpretable classification model on Early Folding Residues during protein folding. BioData Min. 2019; 12:1. Bittrich S, Kaden M, Leberecht C, Kaiser F, Villmann T, Labudde D. PMID: 30627219; PMCID: PMC6321665.

View in: PubMed Mentions: 6
Characterizing the relation of functional and Early Folding Residues in protein structures using the example of aminoacyl-tRNA synthetases. PLoS One. 2018; 13(10):e0206369. Bittrich S, Schroeder M, Labudde D. PMID: 30376559; PMCID: PMC6207335.

View in: PubMed Mentions: 4 Fields:
Med Medicine (General)Sci Science
Translation:Cells
Backbone Brackets and Arginine Tweezers delineate Class I and Class II aminoacyl tRNA synthetases. PLoS Comput Biol. 2018 04; 14(4):e1006101. Kaiser F, Bittrich S, Salentin S, Leberecht C, Haupt VJ, Krautwurst S, Schroeder M, Labudde D. PMID: 29659563; PMCID: PMC5919687.

View in: PubMed Mentions: 11 Fields:
Com Computational Biology
Translation:Humans Cells
SequenceCEROSENE: a computational method and web server to visualize spatial residue neighborhoods at the sequence level. BioData Min. 2016; 9:6. Heinke F, Bittrich S, Kaiser F, Labudde D. PMID: 26819632; PMCID: PMC4728770.

View in: PubMed Mentions:
Fit3D: a web application for highly accurate screening of spatial residue patterns in protein structure data. Bioinformatics. 2016 03 01; 32(5):792-4. Kaiser F, Eisold A, Bittrich S, Labudde D. PMID: 26519504.

View in: PubMed Mentions: 4 Fields:
Com Computational Biology