Rebecca Colman

Title(s)Assistant Adjunct Professor, Medicine
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
ORCID ORCID Icon0000-002-6854-2100 Additional info
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Contributions of GeneXpert® to TB diagnosis in Myanmar. Int J Tuberc Lung Dis. 2022 09 01; 26(9):875-879. Burger Z, Aung HT, Seifert M, Mar TT, Harris V, Colman RE, Rodwell TC, Aung ST. PMID: 35996278; PMCID: PMC9423018.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. The 2021 WHO catalogue of Mycobacterium tuberculosis complex mutations associated with drug resistance: A genotypic analysis. Lancet Microbe. 2022 04; 3(4):e265-e273. Walker TM, Miotto P, Köser CU, Fowler PW, Knaggs J, Iqbal Z, Hunt M, Chindelevitch L, Farhat M, Cirillo DM, Comas I, Posey J, Omar SV, Peto TE, Suresh A, Uplekar S, Laurent S, Colman RE, Nathanson CM, Zignol M, Walker AS, CRyPTIC Consortium, Seq&Treat Consortium, Crook DW, Ismail N, Rodwell TC. PMID: 35373160; PMCID: PMC7612554.
      View in: PubMed   Mentions: 56     Fields:    Translation:Cells
    3. Detecting rifampin and isoniazid resistance in Mycobacterium tuberculosis direct from patient sputum using an automated integrated system. J Clin Tuberc Other Mycobact Dis. 2022 May; 27:100304. Colman RE, Hagan C, Chiles P, Seifert M, Catanzaro DG, Kukhtin AV, Norville R, Hauns L, Bueno A, Holmberg RC, Cooney CG, Rodwell TC. PMID: 35252594; PMCID: PMC8891689.
      View in: PubMed   Mentions: 2  
    4. Age and sex distribution of Mycobacterium tuberculosis infection and rifampicin resistance in Myanmar as detected by Xpert MTB/RIF. BMC Infect Dis. 2021 Aug 09; 21(1):781. Seifert M, Aung HT, Besler N, Harris V, Mar TT, Colman RE, Rodwell TC, Aung ST. PMID: 34372793; PMCID: PMC8351356.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    5. Rapid Detection of Extensively Drug-Resistant Tuberculosis in Clinical Samples Using a Novel Tabletop Platform: Protocol for a Prospective Clinical Study. JMIR Res Protoc. 2021 Jul 14; 10(7):e26748. Hillery N, Seifert M, Catanzaro DG, McKinnon S, Colman RE, Chiles PG, Chesov D, Ciobanu N, Hagan C, Crudu V, Catanzaro A, Rodwell TC. PMID: 34259165; PMCID: PMC8319779.
      View in: PubMed   Mentions: 2  
    6. No evidence for enzootic plague within black-tailed prairie dog (Cynomys ludovicianus) populations. Integr Zool. 2021 Nov; 16(6):834-851. Colman RE, Brinkerhoff RJ, Busch JD, Ray C, Doyle A, Sahl JW, Keim P, Collinge SK, Wagner DM. PMID: 33882192; PMCID: PMC9292313.
      View in: PubMed   Mentions: 4     Fields:    Translation:AnimalsCells
    7. Laboratory Evaluation of a Lateral-Flow Cell for Molecular Detection of First-Line and Second-Line Antituberculosis Drug Resistance. J Clin Microbiol. 2020 10 21; 58(11). Catanzaro DG, Colman RE, Linger Y, Georghiou SB, Kukhtin AV, Seifert M, Holmberg RC, Mshaiel H, Chiles P, Hillery N, Cooney CG, Rodwell TC. PMID: 32817085; PMCID: PMC7587100.
      View in: PubMed   Mentions: 3     Fields:    Translation:HumansCells
    8. Application of Targeted Next-Generation Sequencing Assay on a Portable Sequencing Platform for Culture-Free Detection of Drug-Resistant Tuberculosis from Clinical Samples. J Clin Microbiol. 2020 09 22; 58(10). Cabibbe AM, Spitaleri A, Battaglia S, Colman RE, Suresh A, Uplekar S, Rodwell TC, Cirillo DM. PMID: 32727827; PMCID: PMC7512157.
      View in: PubMed   Mentions: 36     Fields:    Translation:HumansCells
    9. Review of automated DNA extraction systems for sequencing-based solutions for drug-resistant tuberculosis detection. Diagn Microbiol Infect Dis. 2020 Oct; 98(2):115096. Colman RE, Suresh A, Dolinger DL, Muñoz T, Denkinger CM, Rodwell TC. PMID: 32623232.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    10. The effect of sodium thiosulfate on the recovery of Mycobacterium chimaera from heater-cooler unit water samples. J Hosp Infect. 2020 Jun; 105(2):252-257. Mak EEH, Sng LH, Lee BWM, Peh JWL, Colman RE, Seifert M. PMID: 32112827.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsPHPublic Health
    11. Guidance for Studies Evaluating the Accuracy of Rapid Tuberculosis Drug-Susceptibility Tests. J Infect Dis. 2019 10 08; 220(220 Suppl 3):S126-S135. Georghiou SB, Schumacher SG, Rodwell TC, Colman RE, Miotto P, Gilpin C, Ismail N, Rodrigues C, Warren R, Weyer K, Zignol M, Arafah S, Cirillo DM, Denkinger CM. PMID: 31593599.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    12. Whole-genome and targeted sequencing of drug-resistant Mycobacterium tuberculosis on the iSeq100 and MiSeq: A performance, ease-of-use, and cost evaluation. PLoS Med. 2019 04; 16(4):e1002794. Colman RE, Mace A, Seifert M, Hetzel J, Mshaiel H, Suresh A, Lemmer D, Engelthaler DM, Catanzaro DG, Young AG, Denkinger CM, Rodwell TC. PMID: 31039166; PMCID: PMC6490892.
      View in: PubMed   Mentions: 24     Fields:    Translation:HumansCells
    13. Mixed Mycobacterium tuberculosis-Strain Infections Are Associated With Poor Treatment Outcomes Among Patients With Newly Diagnosed Tuberculosis, Independent of Pretreatment Heteroresistance. J Infect Dis. 2018 11 05; 218(12):1974-1982. Shin SS, Modongo C, Baik Y, Allender C, Lemmer D, Colman RE, Engelthaler DM, Warren RM, Zetola NM. PMID: 30085153; PMCID: PMC6217728.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansCells
    14. Coinfections identified from metagenomic analysis of cervical lymph nodes from tularemia patients. BMC Infect Dis. 2018 07 11; 18(1):319. Birdsell DN, Özsürekci Y, Rawat A, Aycan AE, Mitchell CL, Sahl JW, Johansson A, Colman RE, Schupp JM, Ceyhan M, Keim PS, Wagner DM. PMID: 29996780; PMCID: PMC6042416.
      View in: PubMed   Mentions: 5     Fields:    Translation:HumansCells
    15. Low cost, low tech SNP genotyping tools for resource-limited areas: Plague in Madagascar as a model. PLoS Negl Trop Dis. 2017 12; 11(12):e0006077. Mitchell CL, Andrianaivoarimanana V, Colman RE, Busch J, Hornstra-O'Neill H, Keim PS, Wagner DM, Rajerison M, Birdsell DN. PMID: 29227994; PMCID: PMC5739503.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansCells
    16. Cryptic Microheteroresistance Explains Mycobacterium tuberculosis Phenotypic Resistance. Am J Respir Crit Care Med. 2017 11 01; 196(9):1191-1201. Metcalfe JZ, Streicher E, Theron G, Colman RE, Allender C, Lemmer D, Warren R, Engelthaler DM. PMID: 28614668; PMCID: PMC5694839.
      View in: PubMed   Mentions: 18     Fields:    Translation:Cells
    17. Mycobacterium tuberculosis Subculture Results in Loss of Potentially Clinically Relevant Heteroresistance. Antimicrob Agents Chemother. 2017 11; 61(11). Metcalfe JZ, Streicher E, Theron G, Colman RE, Penaloza R, Allender C, Lemmer D, Warren RM, Engelthaler DM. PMID: 28893776; PMCID: PMC5655066.
      View in: PubMed   Mentions: 25     Fields:    Translation:HumansCells
    18. Next-generation sequencing-based user-friendly platforms for drug-resistant tuberculosis diagnosis: A promise for the near future. Int J Mycobacteriol. 2016 Dec; 5 Suppl 1:S27-S28. Dolinger DL, Colman RE, Engelthaler DM, Rodwell TC. PMID: 28043592.
      View in: PubMed   Mentions: 6     Fields:    
    19. The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers. mBio. 2016 09 20; 7(5). Sahl JW, Vazquez AJ, Hall CM, Busch JD, Tuanyok A, Mayo M, Schupp JM, Lummis M, Pearson T, Shippy K, Colman RE, Allender CJ, Theobald V, Sarovich DS, Price EP, Hutcheson A, Korlach J, LiPuma JJ, Ladner J, Lovett S, Koroleva G, Palacios G, Limmathurotsakul D, Wuthiekanun V, Wongsuwan G, Currie BJ, Keim P, Wagner DM. PMID: 27651357; PMCID: PMC5030356.
      View in: PubMed   Mentions: 32     Fields:    Translation:HumansCells
    20. Rapid Drug Susceptibility Testing of Drug-Resistant Mycobacterium tuberculosis Isolates Directly from Clinical Samples by Use of Amplicon Sequencing: a Proof-of-Concept Study. J Clin Microbiol. 2016 08; 54(8):2058-67. Colman RE, Anderson J, Lemmer D, Lehmkuhl E, Georghiou SB, Heaton H, Wiggins K, Gillece JD, Schupp JM, Catanzaro DG, Crudu V, Cohen T, Rodwell TC, Engelthaler DM. PMID: 27225403; PMCID: PMC4963505.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansCells
    21. Genetic variation at the MHC DRB1 locus is similar across Gunnison's prairie dog (Cynomys gunnisoni) colonies regardless of plague history. Ecol Evol. 2016 Apr; 6(8):2624-51. Cobble KR, Califf KJ, Stone NE, Shuey MM, Birdsell DN, Colman RE, Schupp JM, Aziz M, Van Andel R, Rocke TE, Wagner DM, Busch JD. PMID: 27066243; PMCID: PMC4798151.
      View in: PubMed   Mentions: 4  
    22. Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei. PLoS One. 2015; 10(11):e0143254. Hall CM, Busch JD, Shippy K, Allender CJ, Kaestli M, Mayo M, Sahl JW, Schupp JM, Colman RE, Keim P, Currie BJ, Wagner DM. PMID: 26600238; PMCID: PMC4658082.
      View in: PubMed   Mentions: 15     Fields:    Translation:CellsPHPublic Health
    23. Phylogenetic and genomic diversity in isolates from the globally distributed Acinetobacter baumannii ST25 lineage. Sci Rep. 2015 Oct 14; 5:15188. Sahl JW, Del Franco M, Pournaras S, Colman RE, Karah N, Dijkshoorn L, Zarrilli R. PMID: 26462752; PMCID: PMC4604477.
      View in: PubMed   Mentions: 33     Fields:    Translation:Cells
    24. Best practices for evaluating single nucleotide variant calling methods for microbial genomics. Front Genet. 2015; 6:235. Olson ND, Lund SP, Colman RE, Foster JT, Sahl JW, Schupp JM, Keim P, Morrow JB, Salit ML, Zook JM. PMID: 26217378; PMCID: PMC4493402.
      View in: PubMed   Mentions: 79  
    25. Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data. Genome Med. 2015; 7(1):52. Sahl JW, Schupp JM, Rasko DA, Colman RE, Foster JT, Keim P. PMID: 26136847; PMCID: PMC4487561.
      View in: PubMed   Mentions: 23     Fields:    
    26. Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing. PLoS One. 2015; 10(5):e0126626. Colman RE, Schupp JM, Hicks ND, Smith DE, Buchhagen JL, Valafar F, Crudu V, Romancenco E, Noroc E, Jackson L, Catanzaro DG, Rodwell TC, Catanzaro A, Keim P, Engelthaler DM. PMID: 25970423; PMCID: PMC4430321.
      View in: PubMed   Mentions: 45     Fields:    Translation:HumansCells
    27. Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence. PLoS One. 2015; 10(3):e0121052. Sahl JW, Allender CJ, Colman RE, Califf KJ, Schupp JM, Currie BJ, Van Zandt KE, Gelhaus HC, Keim P, Tuanyok A. PMID: 25803742; PMCID: PMC4372212.
      View in: PubMed   Mentions: 17     Fields:    Translation:AnimalsCells
    28. Molecular genotyping of Acinetobacter spp. isolated in Arizona, USA, using multilocus PCR and mass spectrometry. J Med Microbiol. 2013 Sep; 62(Pt 9):1295-1300. Sarovich DS, Colman RE, Price EP, Massire C, Von Schulze AT, Waddell V, Anderson SM, Ecker DJ, Liguori AP, Engelthaler DM, Sampath R, Keim P, Eshoo MW, Wagner DM. PMID: 23741021.
      View in: PubMed   Mentions: 2     Fields:    Translation:HumansCells
    29. Escherichia coli O157:H7 in Ecuador: animal reservoirs, yet no human disease. Vector Borne Zoonotic Dis. 2013 May; 13(5):295-8. Trueba G, Garcés V, V VB, Colman RE, Seymour M, Vogler AJ, Keim P. PMID: 23473224.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimalsCells
    30. Whole genome sequence typing to investigate the Apophysomyces outbreak following a tornado in Joplin, Missouri, 2011. PLoS One. 2012; 7(11):e49989. Etienne KA, Gillece J, Hilsabeck R, Schupp JM, Colman R, Lockhart SR, Gade L, Thompson EH, Sutton DA, Neblett-Fanfair R, Park BJ, Turabelidze G, Keim P, Brandt ME, Deak E, Engelthaler DM. PMID: 23209631; PMCID: PMC3507928.
      View in: PubMed   Mentions: 38     Fields:    Translation:HumansAnimalsPHPublic Health
    31. Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens. J Clin Microbiol. 2012 Jun; 50(6):2059-62. Kaestli M, Richardson LJ, Colman RE, Tuanyok A, Price EP, Bowers JR, Mayo M, Kelley E, Seymour ML, Sarovich DS, Pearson T, Engelthaler DM, Wagner DM, Keim PS, Schupp JM, Currie BJ. PMID: 22442327; PMCID: PMC3372170.
      View in: PubMed   Mentions: 23     Fields:    Translation:HumansCells
    32. Population differences in host immune factors may influence survival of Gunnison's prairie dogs (Cynomys gunnisoni) during plague outbreaks. J Wildl Dis. 2011 Oct; 47(4):968-73. Busch JD, Van Andel R, Cordova J, Colman RE, Keim P, Rocke TE, Leid JG, Van Pelt WE, Wagner DM. PMID: 22102668.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCellsPHPublic Health
    33. Selective isolation of Yersinia pestis from plague-infected fleas. J Microbiol Methods. 2010 Jul; 82(1):95-7. Sarovich DS, Colman RE, Price EP, Chung WK, Lee J, Schupp JM, Cobble KR, Busch JD, Alexander J, Keim P, Wagner DM. PMID: 20385178; PMCID: PMC2903439.
      View in: PubMed   Mentions: 8     Fields:    Translation:AnimalsCellsPHPublic Health
    34. Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis. PLoS Pathog. 2010 Jan 15; 6(1):e1000725. Price EP, Hornstra HM, Limmathurotsakul D, Max TL, Sarovich DS, Vogler AJ, Dale JL, Ginther JL, Leadem B, Colman RE, Foster JT, Tuanyok A, Wagner DM, Peacock SJ, Pearson T, Keim P. PMID: 20090837; PMCID: PMC2799673.
      View in: PubMed   Mentions: 34     Fields:    Translation:HumansCells
    35. Fine-scale identification of the most likely source of a human plague infection. Emerg Infect Dis. 2009 Oct; 15(10):1623-5. Colman RE, Vogler AJ, Lowell JL, Gage KL, Morway C, Reynolds PJ, Ettestad P, Keim P, Kosoy MY, Wagner DM. PMID: 19861057; PMCID: PMC2866393.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    36. Effect of repeat copy number on variable-number tandem repeat mutations in Escherichia coli O157:H7. J Bacteriol. 2006 Jun; 188(12):4253-63. Vogler AJ, Keys C, Nemoto Y, Colman RE, Jay Z, Keim P. PMID: 16740932; PMCID: PMC1482962.
      View in: PubMed   Mentions: 57     Fields:    Translation:HumansAnimalsCells