Rebecca Colman

TitlePostdoctoral Scholar
InstitutionUniversity of California San Diego
Address9500 Gilman Drive #0643
La Jolla CA 92093
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    1. Mitchell CL, Andrianaivoarimanana V, Colman R, Busch J, Hornstra-O'Neill H, Keim PS, Wagner DM, Rajerison M, Birdsell DN. Low cost, low tech SNP genotyping tools for resource-limited areas: Plague in Madagascar as a model. PLoS Negl Trop Dis. 2017 12; 11(12):e0006077. PMID: 29227994.
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    2. Metcalfe JZ, Streicher E, Theron G, Colman R, Allender C, Lemmer D, Warren R, Engelthaler DM. Cryptic Microheteroresistance Explains Mycobacterium tuberculosis Phenotypic Resistance. Am J Respir Crit Care Med. 2017 Nov 01; 196(9):1191-1201. PMID: 28614668.
      View in: PubMed
    3. Metcalfe JZ, Streicher E, Theron G, Colman R, Penaloza R, Allender C, Lemmer D, Warren RM, Engelthaler DM. Mycobacterium tuberculosis Subculture Results in Loss of Potentially Clinically Relevant Heteroresistance. Antimicrob Agents Chemother. 2017 Nov; 61(11). PMID: 28893776.
      View in: PubMed
    4. Dolinger DL, Colman R, Engelthaler DM, Rodwell TC. Next-generation sequencing-based user-friendly platforms for drug-resistant tuberculosis diagnosis: A promise for the near future. Int J Mycobacteriol. 2016 Dec; 5 Suppl 1:S27-S28. PMID: 28043592.
      View in: PubMed
    5. Sahl JW, Vazquez AJ, Hall CM, Busch JD, Tuanyok A, Mayo M, Schupp JM, Lummis M, Pearson T, Shippy K, Colman R, Allender CJ, Theobald V, Sarovich DS, Price EP, Hutcheson A, Korlach J, LiPuma JJ, Ladner J, Lovett S, Koroleva G, Palacios G, Limmathurotsakul D, Wuthiekanun V, Wongsuwan G, Currie BJ, Keim P, Wagner DM. The Effects of Signal Erosion and Core Genome Reduction on the Identification of Diagnostic Markers. MBio. 2016 09 20; 7(5). PMID: 27651357; PMCID: PMC5030356.
    6. Colman R, Anderson J, Lemmer D, Lehmkuhl E, Georghiou SB, Heaton H, Wiggins K, Gillece JD, Schupp JM, Catanzaro DG, Crudu V, Cohen T, Rodwell TC, Engelthaler DM. Rapid Drug Susceptibility Testing of Drug-Resistant Mycobacterium tuberculosis Isolates Directly from Clinical Samples by Use of Amplicon Sequencing: a Proof-of-Concept Study. J Clin Microbiol. 2016 08; 54(8):2058-67. PMID: 27225403; PMCID: PMC4963505.
    7. Cobble KR, Califf KJ, Stone NE, Shuey MM, Birdsell DN, Colman R, Schupp JM, Aziz M, Van Andel R, Rocke TE, Wagner DM, Busch JD. Genetic variation at the MHC DRB1 locus is similar across Gunnison's prairie dog (Cynomys gunnisoni) colonies regardless of plague history. Ecol Evol. 2016 Apr; 6(8):2624-51. PMID: 27066243; PMCID: PMC4798151.
    8. Hall CM, Busch JD, Shippy K, Allender CJ, Kaestli M, Mayo M, Sahl JW, Schupp JM, Colman R, Keim P, Currie BJ, Wagner DM. Diverse Burkholderia Species Isolated from Soils in the Southern United States with No Evidence of B. pseudomallei. PLoS One. 2015; 10(11):e0143254. PMID: 26600238.
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    9. Sahl JW, Del Franco M, Pournaras S, Colman R, Karah N, Dijkshoorn L, Zarrilli R. Phylogenetic and genomic diversity in isolates from the globally distributed Acinetobacter baumannii ST25 lineage. Sci Rep. 2015 Oct 14; 5:15188. PMID: 26462752; PMCID: PMC4604477.
    10. Olson ND, Lund SP, Colman R, Foster JT, Sahl JW, Schupp JM, Keim P, Morrow JB, Salit ML, Zook JM. Best practices for evaluating single nucleotide variant calling methods for microbial genomics. Front Genet. 2015; 6:235. PMID: 26217378; PMCID: PMC4493402.
    11. Sahl JW, Schupp JM, Rasko DA, Colman R, Foster JT, Keim P. Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data. Genome Med. 2015; 7(1):52. PMID: 26136847; PMCID: PMC4487561.
    12. Colman R, Schupp JM, Hicks ND, Smith DE, Buchhagen JL, Valafar F, Crudu V, Romancenco E, Noroc E, Jackson L, Catanzaro DG, Rodwell TC, Catanzaro A, Keim P, Engelthaler DM. Detection of Low-Level Mixed-Population Drug Resistance in Mycobacterium tuberculosis Using High Fidelity Amplicon Sequencing. PLoS One. 2015; 10(5):e0126626. PMID: 25970423; PMCID: PMC4430321.
    13. Sahl JW, Allender CJ, Colman R, Califf KJ, Schupp JM, Currie BJ, Van Zandt KE, Gelhaus HC, Keim P, Tuanyok A. Genomic characterization of Burkholderia pseudomallei isolates selected for medical countermeasures testing: comparative genomics associated with differential virulence. PLoS One. 2015; 10(3):e0121052. PMID: 25803742.
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    14. Sarovich DS, Colman R, Price EP, Massire C, Von Schulze AT, Waddell V, Anderson SM, Ecker DJ, Liguori AP, Engelthaler DM, Sampath R, Keim P, Eshoo MW, Wagner DM. Molecular genotyping of Acinetobacter spp. isolated in Arizona, USA, using multilocus PCR and mass spectrometry. J Med Microbiol. 2013 Sep; 62(Pt 9):1295-300. PMID: 23741021.
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    15. Etienne KA, Gillece J, Hilsabeck R, Schupp JM, Colman R, Lockhart SR, Gade L, Thompson EH, Sutton DA, Neblett-Fanfair R, Park BJ, Turabelidze G, Keim P, Brandt ME, Deak E, Engelthaler DM. Whole genome sequence typing to investigate the Apophysomyces outbreak following a tornado in Joplin, Missouri, 2011. PLoS One. 2012; 7(11):e49989. PMID: 23209631; PMCID: PMC3507928.
    16. Kaestli M, Richardson LJ, Colman R, Tuanyok A, Price EP, Bowers JR, Mayo M, Kelley E, Seymour ML, Sarovich DS, Pearson T, Engelthaler DM, Wagner DM, Keim PS, Schupp JM, Currie BJ. Comparison of TaqMan PCR assays for detection of the melioidosis agent Burkholderia pseudomallei in clinical specimens. J Clin Microbiol. 2012 Jun; 50(6):2059-62. PMID: 22442327; PMCID: PMC3372170.
    17. Busch JD, Van Andel R, Cordova J, Colman R, Keim P, Rocke TE, Leid JG, Van Pelt WE, Wagner DM. Population differences in host immune factors may influence survival of Gunnison's prairie dogs (Cynomys gunnisoni) during plague outbreaks. J Wildl Dis. 2011 Oct; 47(4):968-73. PMID: 22102668.
      View in: PubMed
    18. Sarovich DS, Colman R, Price EP, Chung WK, Lee J, Schupp JM, Cobble KR, Busch JD, Alexander J, Keim P, Wagner DM. Selective isolation of Yersinia pestis from plague-infected fleas. J Microbiol Methods. 2010 Jul; 82(1):95-7. PMID: 20385178; PMCID: PMC2903439.
    19. Price EP, Hornstra HM, Limmathurotsakul D, Max TL, Sarovich DS, Vogler AJ, Dale JL, Ginther JL, Leadem B, Colman R, Foster JT, Tuanyok A, Wagner DM, Peacock SJ, Pearson T, Keim P. Within-host evolution of Burkholderia pseudomallei in four cases of acute melioidosis. PLoS Pathog. 2010 Jan 15; 6(1):e1000725. PMID: 20090837; PMCID: PMC2799673.
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