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Global chemical effects of the microbiome include new bile-acid conjugations. Nature. 2020 03; 579(7797):123-129.
Quinn RA, Melnik AV, Vrbanac A, Fu T, Patras KA, Christy MP, Bodai Z, Belda-Ferre P, Tripathi A, Chung LK, Downes M, Welch RD, Quinn M, Humphrey G, Panitchpakdi M, Weldon KC, Aksenov A, da Silva R, Avila-Pacheco J, Clish C, Bae S, Mallick H, Franzosa EA, Lloyd-Price J, Bussell R, Thron T, Nelson AT, Wang M, Leszczynski E, Vargas F, Gauglitz JM, Meehan MJ, Gentry E, Arthur TD, Komor AC, Poulsen O, Boland BS, Chang JT, Sandborn WJ, Lim M, Garg N, Lumeng JC, Xavier RJ, Kazmierczak BI, Jain R, Egan M, Rhee KE, Ferguson D, Raffatellu M, Vlamakis H, Haddad GG, Siegel D, Huttenhower C, Mazmanian SK, Evans RM, Nizet V, Knight R, Dorrestein PC. PMID: 32103176.
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48 Fields:
Translation:
HumansAnimals
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Human Skin, Oral, and Gut Microbiomes Predict Chronological Age. mSystems. 2020 Feb 11; 5(1).
Huang S, Haiminen N, Carrieri AP, Hu R, Jiang L, Parida L, Russell B, Allaband C, Zarrinpar A, Vázquez-Baeza Y, Belda-Ferre P, Zhou H, Kim HC, Swafford AD, Knight R, Xu ZZ. PMID: 32047061.
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Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea. Nat Commun. 2019 12 02; 10(1):5477.
Zhu Q, Mai U, Pfeiffer W, Janssen S, Asnicar F, Sanders JG, Belda-Ferre P, Al-Ghalith GA, Kopylova E, McDonald D, Kosciolek T, Yin JB, Huang S, Salam N, Jiao JY, Wu Z, Xu ZZ, Cantrell K, Yang Y, Sayyari E, Rabiee M, Morton JT, Podell S, Knights D, Li WJ, Huttenhower C, Segata N, Smarr L, Mirarab S, Knight R. PMID: 31792218.
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31 Fields:
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Cells
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Healthy infants harbor intestinal bacteria that protect against food allergy. Nat Med. 2019 03; 25(3):448-453.
Feehley T, Plunkett CH, Bao R, Choi Hong SM, Culleen E, Belda-Ferre P, Campbell E, Aitoro R, Nocerino R, Paparo L, Andrade J, Antonopoulos DA, Berni Canani R, Nagler CR. PMID: 30643289.
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70 Fields:
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HumansAnimalsCells
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The Microbiome and Its Potential for Pharmacology. Handb Exp Pharmacol. 2019; 260:301-326.
Chavira A, Belda-Ferre P, Kosciolek T, Ali F, Dorrestein PC, Knight R. PMID: 31820171.
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PubMed Mentions:
2 Fields:
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Humans
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Characterization of the microbiota associated to Pecten maximus gonads using 454-pyrosequencing. Int Microbiol. 2016 Jun; 19(2):93-99.
Lasa A, Mira A, Camelo-Castillo A, Belda-Ferre P, Romalde JL. PMID: 27845496.
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3 Fields:
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AnimalsCells
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What's LPS Got to Do with It? A Role for Gut LPS Variants in Driving Autoimmune and Allergic Disease. . 2016 May 11; 19(5):572-4.
Feehley T, Belda-Ferre P, Nagler CR. PMID: 27173923.
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The human oral metaproteome reveals potential biomarkers for caries disease. Proteomics. 2015 Oct; 15(20):3497-507.
Belda-Ferre P, Williamson J, Simón-Soro Á, Artacho A, Jensen ON, Mira A. PMID: 26272225.
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17 Fields:
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HumansCells
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Microbiota diversity and gene expression dynamics in human oral biofilms. BMC Genomics. 2014 Apr 27; 15:311.
Benítez-Páez A, Belda-Ferre P, Simón-Soro A, Mira A. PMID: 24767457.
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53 Fields:
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Humans
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A tissue-dependent hypothesis of dental caries. Caries Res. 2013; 47(6):591-600.
Simón-Soro A, Belda-Ferre P, Cabrera-Rubio R, Alcaraz LD, Mira A. PMID: 24080530.
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39 Fields:
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HumansAnimalsCells
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Streptococcus dentisani sp. nov., a novel member of the mitis group. Int J Syst Evol Microbiol. 2014 Jan; 64(Pt 1):60-65.
Camelo-Castillo A, Benítez-Páez A, Belda-Ferre P, Cabrera-Rubio R, Mira A. PMID: 24006481.
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PubMed Mentions:
22 Fields:
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HumansCells
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Detection of transient bacteraemia following dental extractions by 16S rDNA pyrosequencing: a pilot study. PLoS One. 2013; 8(3):e57782.
Benítez-Páez A, Álvarez M, Belda-Ferre P, Rubido S, Mira A, Tomás I. PMID: 23469240.
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PubMed Mentions:
21 Fields:
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HumansCells
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Identifying a healthy oral microbiome through metagenomics. Clin Microbiol Infect. 2012 Jul; 18 Suppl 4:54-7.
Alcaraz LD, Belda-Ferre P, Cabrera-Rubio R, Romero H, Simón-Soro A, Pignatelli M, Mira A. PMID: 22647051.
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PubMed Mentions:
27 Fields:
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HumansCells
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Amplification by PCR artificially reduces the proportion of the rare biosphere in microbial communities. PLoS One. 2012; 7(1):e29973.
Gonzalez JM, Portillo MC, Belda-Ferre P, Mira A. PMID: 22253843.
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40 Fields:
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HumansCells
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Mining virulence genes using metagenomics. PLoS One. 2011; 6(10):e24975.
Belda-Ferre P, Cabrera-Rubio R, Moya A, Mira A. PMID: 22039404.
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6 Fields:
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Cells
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The oral metagenome in health and disease. ISME J. 2012 Jan; 6(1):46-56.
Belda-Ferre P, Alcaraz LD, Cabrera-Rubio R, Romero H, Simón-Soro A, Pignatelli M, Mira A. PMID: 21716308.
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PubMed Mentions:
168 Fields:
Translation:
HumansCells