Paulo Wender Portal Gomes

Title(s)Postdoctoral Scholar, School of Pharmacy and Pharmaceutical Science
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
ORCID ORCID Icon0000-0001-5478-2448 Additional info
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    Chemist with a Ph.D. in Organic Chemistry and Natural Products. Enthusiast in metabolomics mass spectrometry-based, with expertise in LC-MS/MS analysis, and biomolecule discovery. Currently, I am a Post-Doc Researcher at the University of California San Diego, USA, focusing on untargeted metabolomics of biological samples under Prof. Pieter C. Dorrestein's supervision.

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Co-occurrence network analysis reveals the alterations of the skin microbiome and metabolome in adults with mild to moderate atopic dermatitis. mSystems. 2024 Mar 19; 9(3):e0111923. P Gomes PW, Mannochio-Russo H, Mao J, Zhao HN, Ancira J, Tipton CD, Dorrestein PC, Li M. PMID: 38319107; PMCID: PMC10949451.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    2. microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data. Nat Microbiol. 2024 Feb; 9(2):336-345. Zuffa S, Schmid R, Bauermeister A, P Gomes PW, Caraballo-Rodriguez AM, El Abiead Y, Aron AT, Gentry EC, Zemlin J, Meehan MJ, Avalon NE, Cichewicz RH, Buzun E, Terrazas MC, Hsu CY, Oles R, Ayala AV, Zhao J, Chu H, Kuijpers MCM, Jackrel SL, Tugizimana F, Nephali LP, Dubery IA, Madala NE, Moreira EA, Costa-Lotufo LV, Lopes NP, Rezende-Teixeira P, Jimenez PC, Rimal B, Patterson AD, Traxler MF, Pessotti RC, Alvarado-Villalobos D, Tamayo-Castillo G, Chaverri P, Escudero-Leyva E, Quiros-Guerrero LM, Bory AJ, Joubert J, Rutz A, Wolfender JL, Allard PM, Sichert A, Pontrelli S, Pullman BS, Bandeira N, Gerwick WH, Gindro K, Massana-Codina J, Wagner BC, Forchhammer K, Petras D, Aiosa N, Garg N, Liebeke M, Bourceau P, Kang KB, Gadhavi H, de Carvalho LPS, Silva Dos Santos M, Pérez-Lorente AI, Molina-Santiago C, Romero D, Franke R, Brönstrup M, Vera Ponce de León A, Pope PB, La Rosa SL, La Barbera G, Roager HM, Laursen MF, Hammerle F, Siewert B, Peintner U, Licona-Cassani C, Rodriguez-Orduña L, Rampler E, Hildebrand F, Koellensperger G, Schoeny H, Hohenwallner K, Panzenboeck L, Gregor R, O'Neill EC, Roxborough ET, Odoi J, Bale NJ, Ding S, Sinninghe Damsté JS, Guan XL, Cui JJ, Ju KS, Silva DB, Silva FMR, da Silva GF, Koolen HHF, Grundmann C, Clement JA, Mohimani H, Broders K, McPhail KL, Ober-Singleton SE, Rath CM, McDonald D, Knight R, Wang M, Dorrestein PC. PMID: 38316926; PMCID: PMC10847041.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    3. Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics. Nat Commun. 2023 Dec 20; 14(1):8488. Bittremieux W, Avalon NE, Thomas SP, Kakhkhorov SA, Aksenov AA, Gomes PWP, Aceves CM, Caraballo-Rodríguez AM, Gauglitz JM, Gerwick WH, Huan T, Jarmusch AK, Kaddurah-Daouk RF, Kang KB, Kim HW, Kondic T, Mannochio-Russo H, Meehan MJ, Melnik AV, Nothias LF, O'Donovan C, Panitchpakdi M, Petras D, Schmid R, Schymanski EL, van der Hooft JJJ, Weldon KC, Yang H, Xing S, Zemlin J, Wang M, Dorrestein PC. PMID: 38123557; PMCID: PMC10733301.
      View in: PubMed   Mentions: 3     Fields:    
    4. Putative Identification of New Phragmaline-Type Limonoids from the Leaves of Swietenia macrophylla King: A Case Study Using Mass Spectrometry-Based Molecular Networking. Molecules. 2023 Nov 15; 28(22). Reis JDE, Gomes PWP, Sá PRDC, Pamplona SDGSR, Silva CYYE, da Silva MFDGF, Bishayee A, da Silva MN. PMID: 38005325; PMCID: PMC10673509.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    5. Exploring the antiviral potential of justicidin B and four glycosylated lignans from Phyllanthus brasiliensis against Zika virus: A promising pharmacological approach. Phytomedicine. 2024 Jan; 123:155197. Ferraz AC, Gomes PWP, Menegatto MBDS, Lima RLS, Guimarães PH, Reis JDE, Carvalho ARV, Pamplona SDGSR, Muribeca AJB, de Magalhães JC, Yoshioka E Silva CY, da Silva MN, Magalhães CLB. PMID: 37952409.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    6. Ex vivo study of molecular changes of stained teeth following hydrogen peroxide and peroxymonosulfate treatments. Sci Rep. 2023 09 28; 13(1):16349. P Gomes PW, Zuffa S, Bauermeister A, Caraballo-Rodríguez AM, Zhao HN, Mannochio-Russo H, Dogo-Isonagie C, Patel O, Pimenta P, Gronlund J, Lavender S, Pilch S, Maloney V, North M, Dorrestein PC. PMID: 37770593; PMCID: PMC10539445.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    7. Characterization of a tetrameric proanthocyanidin in Stryphnodendron pulcherrimum and an overview on potential health benefits of condensed tannins via interaction with gut microbiota. Journal of Functional Foods. 2023; (109):105801. Paulo Wender P. Gomes, Emilli Roberta S. Gomes, Alice R.V. Carvalho, Helena Mannochio-Russo, Tiago F. Leão, José Diogo E. Reis, Maria Rosilda V. de Sarges, Horrana A. Mardegan, Sônia das G.S.R. Pamplona, Consuelo Yumiko Y. e Silva, Milton N. da Silva. View Publication.
    8. (-)-5-Demethoxygrandisin B a New Lignan from Virola surinamensis (Rol.) Warb. Leaves: Evaluation of the Leishmanicidal Activity by In Vitro and In Silico Approaches. Pharmaceutics. 2023 Sep 07; 15(9). Paes SS, Silva-Silva JV, Portal Gomes PW, Silva LOD, Costa APLD, Lopes Júnior ML, Hardoim DJ, Moragas-Tellis CJ, Taniwaki NN, Bertho AL, Molfetta FA, Almeida-Souza F, Santos LS, Calabrese KDS. PMID: 37765261; PMCID: PMC10535778.
      View in: PubMed   Mentions: 1  
    9. Reverse ethnopharmacological-guided study of Aristolochia trilabiata leaves - unveiling its antioxidant potential and chemical profile. South African Journal of Botany. 2023; (161):1-13. Andrew Magno Teixeira, Paulo Wender P. Gomes, Fabio Araújo da Silva, Paulo Weslem P. Gomes, Michael Murgu, Ricardo M. Borges. View Publication.
    10. Untargeted-based metabolomics analysis and in vitro/in silico antiviral activity of extracts from Phyllanthus brasiliensis (Aubl.) Poir. Phytochem Anal. 2023 Oct; 34(7):869-883. Carvalho ARV, Reis JDE, Gomes PWP, Ferraz AC, Mardegan HA, Menegatto MBDS, Souza Lima RL, de Sarges MRV, Pamplona SDGSR, Jeunon Gontijo KS, de Magalhães JC, da Silva MN, Magalhães CLB, Silva CYYE. PMID: 37403427.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    11. Microbial Metabolites Annotation by Mass Spectrometry-Based Metabolomics. Adv Exp Med Biol. 2023; 1439:225-248. Gomes PWP, de Tralia Medeiros TC, Maimone NM, Leão TF, de Moraes LAB, Bauermeister A. PMID: 37843811.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    12. NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters. PNAS Nexus. 2022 Nov; 1(5):pgac257. Leão TF, Wang M, da Silva R, Gurevich A, Bauermeister A, Gomes PWP, Brejnrod A, Glukhov E, Aron AT, Louwen JJR, Kim HW, Reher R, Fiore MF, van der Hooft JJJ, Gerwick L, Gerwick WH, Bandeira N, Dorrestein PC. PMID: 36712343; PMCID: PMC9802219.
      View in: PubMed   Mentions: 2  
    13. The Roots of Deguelia nitidula as a Natural Antibacterial Source against Staphylococcus aureus Strains. Metabolites. 2022 Nov 08; 12(11). Nogueira-Lima SHC, Gomes PWP, Navegantes-Lima KC, Reis JDE, Carvalho ARV, Pamplona SDGSR, Muribeca AJB, da Silva MN, Monteiro MC, E Silva CYY. PMID: 36355166; PMCID: PMC9696647.
      View in: PubMed   Mentions: 1  
    14. Antibacterial Activity from Momordica charantia L. Leaves and Flavones Enriched Phase. Pharmaceutics. 2022 Aug 26; 14(9). Muribeca AJB, Gomes PWP, Paes SS, da Costa APA, Gomes PWP, Viana JS, Reis JDE, Pamplona SDGSR, Silva C, Bauermeister A, Santos LDS, da Silva MN. PMID: 36145544; PMCID: PMC9505480.
      View in: PubMed   Mentions: 2  
    15. Chemical Composition of Leaves, Stem, and Roots of Peperomia pellucida (L.) Kunth. Molecules. 2022 Mar 11; 27(6). Gomes PWP, Barretto H, Reis JDE, Muribeca A, Veloso A, Albuquerque C, Teixeira A, Braamcamp W, Pamplona S, Silva C, Silva M. PMID: 35335210; PMCID: PMC8950162.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    16. Antiviral Plants from Marajó Island, Brazilian Amazon: A Narrative Review. Molecules. 2022 Feb 24; 27(5). Gomes PWP, Martins L, Gomes E, Muribeca A, Pamplona S, Komesu A, Bichara C, Rai M, Silva C, Silva M. PMID: 35268642; PMCID: PMC8911695.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansAnimalsCells
    17. Chemical composition and antibacterial action of Stryphnodendron pulcherrimum bark extract, “barbatimão” species: Evaluation of its use as a topical agent. Arabian Journal of Chemistry. 2021; 6(14):103183. Paulo W.P. Gomes, Thaiana C.D.L. Pamplona, Kely C. Navegantes-Lima, Lucas B.G. Quadros, Ana L.B. Oliveira, Sávio M. Santos, Consuelo Y.Y. e Silva, Maria J.C. Silva, Jesus N.S. Souza, Luis M. Quirós-Guerrero, Jean A. Boutin, Marta C. Monteiro, Milton N. da Silva.
    18. Constituents of Chamaecrista diphylla (L.) Greene Leaves with Potent Antioxidant Capacity: A Feature-Based Molecular Network Dereplication Approach. Pharmaceutics. 2021 May 10; 13(5). Gomes P, Quirós-Guerrero L, Muribeca A, Reis J, Pamplona S, Lima AH, Trindade M, Silva C, Souza JNS, Boutin J, Wolfender JL, Silva M. PMID: 34068527; PMCID: PMC8150882.
      View in: PubMed   Mentions: 5  
    19. Feature-Based Molecular Network-Guided Dereplication of Natural Bioactive Products from Leaves of Stryphnodendron pulcherrimum (Willd.) Hochr. Metabolites. 2021 Apr 29; 11(5). Gomes P, Quirós-Guerrero L, Silva C, Pamplona S, Boutin JA, Eberlin M, Wolfender JL, Silva M. PMID: 33946668; PMCID: PMC8147077.
      View in: PubMed   Mentions: 8  
    20. Secure and Sustainable Sourcing of Plant Tissues for the Exhaustive Exploration of Their Chemodiversity. Molecules. 2020 Dec 18; 25(24). Joseph RC, Silva da Fonseca Diniz M, Magno do Nascimento V, Barbosa Muribeca AJ, Costa Santiago JC, da Cunha Borges L, da Costa Sá PR, Portal Gomes PW, da Silva Cardoso JC, Rocha de Castro MN, Fiusa T, Rogez H, Darnet S, Pinheiro Arruda MS, Nascimento da Silva M, Cardoso Arruda A, Boutin JA, Silva CYYE, Lautié E. PMID: 33352821; PMCID: PMC7766005.
      View in: PubMed   Mentions: 4     Fields:    Translation:Animals
    21. Chemical Composition, Toxicity, Antinociceptive, and Anti-Inflammatory Activity of Dry Aqueous Extract of Varronia multispicata (Cham.) Borhidi (Cordiaceae) Leaves. Front Pharmacol. 2019; 10:1376. Lopes K, Oliveira J, Sousa-Junior FJC, Santos TDF, Andrade D, Andrade SL, Pereira WL, Gomes PWP, Monteiro MC, E Silva CYY, da Silva MN, Maia CF, Fontes-Júnior EA. PMID: 31827436; PMCID: PMC6890604.
      View in: PubMed   Mentions: 4  
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