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Mikhail Kolmogorov

Title(s)Postdoctoral Scholar, Computer Science and Engineering
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. metaFlye: scalable long-read metagenome assembly using repeat graphs. Nat Methods. 2020 Nov; 17(11):1103-1110. Kolmogorov M, Bickhart DM, Behsaz B, Gurevich A, Rayko M, Shin SB, Kuhn K, Yuan J, Polevikov E, Smith TPL, Pevzner PA. PMID: 33020656.
      View in: PubMed   Mentions:    Fields:    
    2. Assembly Graph Browser: interactive visualization of assembly graphs. Bioinformatics. 2019 09 15; 35(18):3476-3478. Mikheenko A, Kolmogorov M. PMID: 30715194.
      View in: PubMed   Mentions:    Fields:    
    3. Assembly of long, error-prone reads using repeat graphs. Nat Biotechnol. 2019 05; 37(5):540-546. Kolmogorov M, Yuan J, Lin Y, Pevzner PA. PMID: 30936562.
      View in: PubMed   Mentions: 136     Fields:    Translation:HumansCells
    4. Chromosome assembly of large and complex genomes using multiple references. Genome Res. 2018 11; 28(11):1720-1732. Kolmogorov M, Armstrong J, Raney BJ, Streeter I, Dunn M, Yang F, Odom D, Flicek P, Keane TM, Thybert D, Paten B, Pham S. PMID: 30341161.
      View in: PubMed   Mentions: 15     Fields:    Translation:Animals
    5. High-quality genome sequences of uncultured microbes by assembly of read clouds. Nat Biotechnol. 2018 Oct 15. Bishara A, Moss EL, Kolmogorov M, Parada AE, Weng Z, Sidow A, Dekas AE, Batzoglou S, Bhatt AS. PMID: 30320765.
      View in: PubMed   Mentions: 12     Fields:    
    6. Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci. Nat Genet. 2018 11; 50(11):1574-1583. Lilue J, Doran AG, Fiddes IT, Abrudan M, Armstrong J, Bennett R, Chow W, Collins J, Collins S, Czechanski A, Danecek P, Diekhans M, Dolle DD, Dunn M, Durbin R, Earl D, Ferguson-Smith A, Flicek P, Flint J, Frankish A, Fu B, Gerstein M, Gilbert J, Goodstadt L, Harrow J, Howe K, Ibarra-Soria X, Kolmogorov M, Lelliott CJ, Logan DW, Loveland J, Mathews CE, Mott R, Muir P, Nachtweide S, Navarro FCP, Odom DT, Park N, Pelan S, Pham SK, Quail M, Reinholdt L, Romoth L, Shirley L, Sisu C, Sjoberg-Herrera M, Stanke M, Steward C, Thomas M, Threadgold G, Thybert D, Torrance J, Wong K, Wood J, Yalcin B, Yang F, Adams DJ, Paten B, Keane TM. PMID: 30275530.
      View in: PubMed   Mentions: 36     Fields:    Translation:Animals
    7. Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes. Genome Res. 2018 04; 28(4):448-459. Thybert D, Roller M, Navarro FCP, Fiddes I, Streeter I, Feig C, Martin-Galvez D, Kolmogorov M, Janoušek V, Akanni W, Aken B, Aldridge S, Chakrapani V, Chow W, Clarke L, Cummins C, Doran A, Dunn M, Goodstadt L, Howe K, Howell M, Josselin AA, Karn RC, Laukaitis CM, Jingtao L, Martin F, Muffato M, Nachtweide S, Quail MA, Sisu C, Stanke M, Stefflova K, Van Oosterhout C, Veyrunes F, Ward B, Yang F, Yazdanifar G, Zadissa A, Adams DJ, Brazma A, Gerstein M, Paten B, Pham S, Keane TM, Odom DT, Flicek P. PMID: 29563166.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    8. Single-molecule protein identification by sub-nanopore sensors. PLoS Comput Biol. 2017 05; 13(5):e1005356. Kolmogorov M, Kennedy E, Dong Z, Timp G, Pevzner PA. PMID: 28486472.
      View in: PubMed   Mentions: 8     Fields:    
    9. Assembly of long error-prone reads using de Bruijn graphs. Proc Natl Acad Sci U S A. 2016 12 27; 113(52):E8396-E8405. Lin Y, Yuan J, Kolmogorov M, Shen MW, Chaisson M, Pevzner PA. PMID: 27956617.
      View in: PubMed   Mentions: 31     Fields:    Translation:Cells
    10. SpectroGene: A Tool for Proteogenomic Annotations Using Top-Down Spectra. J Proteome Res. 2016 Jan 04; 15(1):144-51. Kolmogorov M, Liu X, Pevzner PA. PMID: 26629978.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    11. Ragout-a reference-assisted assembly tool for bacterial genomes. Bioinformatics. 2014 Jun 15; 30(12):i302-9. Kolmogorov M, Raney B, Paten B, Pham S. PMID: 24931998.
      View in: PubMed   Mentions: 58     Fields:    Translation:Cells
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