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Mikhail Kolmogorov

Title(s)Postdoctoral Scholar, Computer Science and Engineering
SchoolAcademic Aff
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Mikheenko A, Kolmogorov M. Assembly Graph Browser: interactive visualization of assembly graphs. Bioinformatics. 2019 Sep 15; 35(18):3476-3478. PMID: 30715194.
      View in: PubMed
    2. Kolmogorov M, Yuan J, Lin Y, Pevzner PA. Assembly of long, error-prone reads using repeat graphs. Nat Biotechnol. 2019 05; 37(5):540-546. PMID: 30936562.
      View in: PubMed
    3. Kolmogorov M, Armstrong J, Raney BJ, Streeter I, Dunn M, Yang F, Odom D, Flicek P, Keane TM, Thybert D, Paten B, Pham S. Chromosome assembly of large and complex genomes using multiple references. Genome Res. 2018 11; 28(11):1720-1732. PMID: 30341161.
      View in: PubMed
    4. Bishara A, Moss EL, Kolmogorov M, Parada AE, Weng Z, Sidow A, Dekas AE, Batzoglou S, Bhatt AS. High-quality genome sequences of uncultured microbes by assembly of read clouds. Nat Biotechnol. 2018 Oct 15. PMID: 30320765.
      View in: PubMed
    5. Lilue J, Doran AG, Fiddes IT, Abrudan M, Armstrong J, Bennett R, Chow W, Collins J, Collins S, Czechanski A, Danecek P, Diekhans M, Dolle DD, Dunn M, Durbin R, Earl D, Ferguson-Smith A, Flicek P, Flint J, Frankish A, Fu B, Gerstein M, Gilbert J, Goodstadt L, Harrow J, Howe K, Ibarra-Soria X, Kolmogorov M, Lelliott CJ, Logan DW, Loveland J, Mathews CE, Mott R, Muir P, Nachtweide S, Navarro FCP, Odom DT, Park N, Pelan S, Pham SK, Quail M, Reinholdt L, Romoth L, Shirley L, Sisu C, Sjoberg-Herrera M, Stanke M, Steward C, Thomas M, Threadgold G, Thybert D, Torrance J, Wong K, Wood J, Yalcin B, Yang F, Adams DJ, Paten B, Keane TM. Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci. Nat Genet. 2018 11; 50(11):1574-1583. PMID: 30275530.
      View in: PubMed
    6. Thybert D, Roller M, Navarro FCP, Fiddes I, Streeter I, Feig C, Martin-Galvez D, Kolmogorov M, JanouĊĦek V, Akanni W, Aken B, Aldridge S, Chakrapani V, Chow W, Clarke L, Cummins C, Doran A, Dunn M, Goodstadt L, Howe K, Howell M, Josselin AA, Karn RC, Laukaitis CM, Jingtao L, Martin F, Muffato M, Nachtweide S, Quail MA, Sisu C, Stanke M, Stefflova K, Van Oosterhout C, Veyrunes F, Ward B, Yang F, Yazdanifar G, Zadissa A, Adams DJ, Brazma A, Gerstein M, Paten B, Pham S, Keane TM, Odom DT, Flicek P. Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes. Genome Res. 2018 04; 28(4):448-459. PMID: 29563166.
      View in: PubMed
    7. Kolmogorov M, Kennedy E, Dong Z, Timp G, Pevzner PA. Single-molecule protein identification by sub-nanopore sensors. PLoS Comput Biol. 2017 05; 13(5):e1005356. PMID: 28486472.
      View in: PubMed
    8. Lin Y, Yuan J, Kolmogorov M, Shen MW, Chaisson M, Pevzner PA. Assembly of long error-prone reads using de Bruijn graphs. Proc Natl Acad Sci U S A. 2016 12 27; 113(52):E8396-E8405. PMID: 27956617.
      View in: PubMed
    9. Kolmogorov M, Liu X, Pevzner PA. SpectroGene: A Tool for Proteogenomic Annotations Using Top-Down Spectra. J Proteome Res. 2016 Jan 04; 15(1):144-51. PMID: 26629978.
      View in: PubMed
    10. Kolmogorov M, Raney B, Paten B, Pham S. Ragout-a reference-assisted assembly tool for bacterial genomes. Bioinformatics. 2014 Jun 15; 30(12):i302-9. PMID: 24931998.
      View in: PubMed