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Michael Galperin

Title(s)Associate Professor, Chemistry and Biochemistry
SchoolAcademic Aff
Phone858-246-0511
ORCID ORCID Icon0000-0002-1401-5970 Additional info
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    Collapse Biography 
    Collapse Education and Training
    Ural State University, Ekaterinburg, RussiaM.Sc. (with distinction)06/1991Theoretical Physics
    Institute of Metal Physics, Russian Academy of Sciences, Ekaterinburg, Russia11/1995Theoretical Physics
    Tel Aviv University, Tel Aviv, IsraelPh.D. (with distinction)01/2003Chemical Physics
    Duke University, Durham, NC08/2003Chemical Physics
    Northwestern University, Evanston, IL08/2007Chemical Physics
    Los Alamos National Laboratory, Los Alamos, NM06/2008Chemical Physics
    Collapse Awards and Honors
    Tel Aviv University2001The Israel Chemical Society J. Jortner Prize
    Los Alamos National Laboratory2007  - 2009Director's Postdoctoral Fellowship
    University of California, San Diego2011  - 2012Hellman Faculty Fellow
    University of California, San Diego2011  - 2017DOE Early Career Award
    University of California, San Diego2017Top Reviewer in the Journal of Chemical Physics

    Collapse ORNG Applications 
    Collapse Websites

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Galperin MY, Chou SH. Structural conservation and diversity of PilZ-related domains. J Bacteriol. 2019 Nov 18. PMID: 31740493.
      View in: PubMed
    2. Wiegand S, Jogler M, Boedeker C, Pinto D, Vollmers J, Rivas-Marín E, Kohn T, Peeters SH, Heuer A, Rast P, Oberbeckmann S, Bunk B, Jeske O, Meyerdierks A, Storesund JE, Kallscheuer N, Lücker S, Lage OM, Pohl T, Merkel BJ, Hornburger P, Müller RW, Brümmer F, Labrenz M, Spormann AM, Op den Camp HJM, Overmann J, Amann R, Jetten MSM, Mascher T, Medema MH, Devos DP, Kaster AK, Øvreås L, Rohde M, Galperin MY, Jogler C. Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology. Nat Microbiol. 2020 Jan; 5(1):126-140. PMID: 31740763.
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    3. Bergmann N, Galperin M. Electron Transfer Methods in Open Systems. J Phys Chem B. 2019 Aug 22; 123(33):7225-7232. PMID: 31361138.
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    4. Kimura K, Miwa K, Imada H, Imai-Imada M, Kawahara S, Takeya J, Kawai M, Galperin M, Kim Y. Selective triplet exciton formation in a single molecule. Nature. 2019 06; 570(7760):210-213. PMID: 31168096.
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    5. Chen F, Cohen G, Galperin M. Auxiliary Master Equation for Nonequilibrium Dual-Fermion Approach. Phys Rev Lett. 2019 May 10; 122(18):186803. PMID: 31144909.
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    6. Chen F, Miwa K, Galperin M. Electronic friction in interacting systems. J Chem Phys. 2019 May 07; 150(17):174101. PMID: 31067885.
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    7. Miwa K, Najarian AM, McCreery RL, Galperin M. Hubbard Nonequilibrium Green's Function Analysis of Photocurrent in Nitroazobenzene Molecular Junction. J Phys Chem Lett. 2019 Apr 04; 10(7):1550-1557. PMID: 30879300.
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    8. Miwa K, Imada H, Imai-Imada M, Kimura K, Galperin M, Kim Y. Many-Body State Description of Single-Molecule Electroluminescence Driven by a Scanning Tunneling Microscope. Nano Lett. 2019 05 08; 19(5):2803-2811. PMID: 30694065.
      View in: PubMed
    9. Gabriel Cabra, Massimiliano Di Ventra, and Michael Galperin.. Local-noise spectroscopy for nonequilibrium systems. Physical Review B. 2018; 98(23):235432.
    10. Chen F, Miwa K, Galperin M. Current-Induced Forces for Nonadiabatic Molecular Dynamics. J Phys Chem A. 2019 Jan 24; 123(3):693-701. PMID: 30354167.
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    11. Nitzan A, Galperin M. Kinetic Schemes in Open Interacting Systems. J Phys Chem Lett. 2018 Sep 06; 9(17):4886-4892. PMID: 30095264.
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    12. Cabra G, Jensen A, Galperin M. On simulation of local fluxes in molecular junctions. J Chem Phys. 2018 May 28; 148(20):204103. PMID: 29865820.
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    13. Miwa K, Chen F, Galperin M. Towards Noise Simulation in Interacting Nonequilibrium Systems Strongly Coupled to Baths. Sci Rep. 2017 08 29; 7(1):9735. PMID: 28851909.
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    14. Galperin M. Photonics and spectroscopy in nanojunctions: a theoretical insight. Chem Soc Rev. 2017 Jul 03; 46(13):4000-4019. PMID: 28398449.
      View in: PubMed
    15. Feng Chen, Maicol A. Ochoa, and Michael Galperin.. Nonequilibrium diagrammatic technique for Hubbard Green functions. The Journal of Chemical Physics. 2016; 146(9):092301.
    16. Gao Y, Galperin M. Simulation of optical response functions in molecular junctions. J Chem Phys. 2016 Jun 28; 144(24):244106. PMID: 27369496.
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    17. Gao Y, Galperin M, Nitzan A. On the widths of Stokes lines in Raman scattering from molecules adsorbed at metal surfaces and in molecular conduction junctions. J Chem Phys. 2016 Jun 28; 144(24):244114. PMID: 27369504.
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    18. Gao Y, Galperin M. Optical spectroscopy of molecular junctions: Nonequilibrium Green's functions perspective. J Chem Phys. 2016 May 07; 144(17):174113. PMID: 27155631.
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    19. Galperin M, Nitzan A. Nuclear Dynamics at Molecule-Metal Interfaces: A Pseudoparticle Perspective. J Phys Chem Lett. 2015 Dec 17; 6(24):4898-903. PMID: 26589690.
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    20. Galperin M, Ratner MA, Nitzan A. Comment on "Frequency-domain stimulated and spontaneous light emission signals at molecular junctions" [J. Chem. Phys. 141, 074107 (2014)]. J Chem Phys. 2015 Apr 07; 142(13):137101. PMID: 25854261.
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    21. Esposito M, Ochoa MA, Galperin M. Quantum thermodynamics: a nonequilibrium Green's function approach. Phys Rev Lett. 2015 Feb 27; 114(8):080602. PMID: 25768745.
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    22. Ochoa MA, Selzer Y, Peskin U, Galperin M. Pump-Probe Noise Spectroscopy of Molecular Junctions. J Phys Chem Lett. 2015 Feb 05; 6(3):470-6. PMID: 26261965.
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    23. Ochoa MA, Galperin M, Ratner MA. A non-equilibrium equation-of-motion approach to quantum transport utilizing projection operators. J Phys Condens Matter. 2014 Nov 12; 26(45):455301. PMID: 25318540.
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    24. Baratz A, White AJ, Galperin M, Baer R. Effects of Electromagnetic Coupling on Conductance Switching of a Gated Tunnel Junction. J Phys Chem Lett. 2014 Oct 16; 5(20):3545-50. PMID: 26278607.
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    25. White AJ, Tretiak S, Galperin M. Raman scattering in molecular junctions: a pseudoparticle formulation. Nano Lett. 2014 Feb 12; 14(2):699-703. PMID: 24447295.
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    26. White AJ, Migliore A, Galperin M, Nitzan A. Quantum transport with two interacting conduction channels. J Chem Phys. 2013 May 07; 138(17):174111. PMID: 23656118.
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    27. Jahn BO, Ottosson H, Galperin M, Fransson J. Organic single molecular structures for light induced spin-pump devices. ACS Nano. 2013 Feb 26; 7(2):1064-71. PMID: 23350843.
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    28. Banik M, Apkarian VA, Park TH, Galperin M. Raman Staircase in Charge Transfer SERS at the Junction of Fusing Nanospheres. J Phys Chem Lett. 2013 Jan 03; 4(1):88-92. PMID: 26291217.
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    29. Galperin M, Nitzan A. Cooperative effects in inelastic tunneling. J Phys Chem B. 2013 Apr 25; 117(16):4449-53. PMID: 23113610.
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    30. White AJ, Galperin M. Inelastic transport: a pseudoparticle approach. Phys Chem Chem Phys. 2012 Oct 28; 14(40):13809-19. PMID: 22797677.
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    31. Galperin M, Nitzan A. Molecular optoelectronics: the interaction of molecular conduction junctions with light. Phys Chem Chem Phys. 2012 Jul 14; 14(26):9421-38. PMID: 22648067.
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    32. Peskin U, Galperin M. Coherently controlled molecular junctions. J Chem Phys. 2012 Jan 28; 136(4):044107. PMID: 22299861.
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    33. Fransson J, Galperin M. Spin Seebeck coefficient of a molecular spin pump. Phys Chem Chem Phys. 2011 Aug 28; 13(32):14350-7. PMID: 21655558.
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    34. Yeganeh S, Ratner MA, Galperin M, Nitzan A. Transport in state space: voltage-dependent conductance calculations of benzene-1,4-dithiol. Nano Lett. 2009 May; 9(5):1770-4. PMID: 19323475.
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    35. Galperin M, Ratner MA, Nitzan A. Raman scattering in current-carrying molecular junctions. J Chem Phys. 2009 Apr 14; 130(14):144109. PMID: 19368431.
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    36. Galperin M, Ratner MA, Nitzan A. Raman scattering from nonequilibrium molecular conduction junctions. Nano Lett. 2009 Feb; 9(2):758-62. PMID: 19159246.
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    37. Galperin M, Nitzan A, Ratner MA. The non-linear response of molecular junctions: the polaron model revisited. J Phys Condens Matter. 2008 Sep 17; 20(37):374107. PMID: 21694414.
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    38. Galperin M, Tretiak S. Linear optical response of current-carrying molecular junction: a nonequilibrium Green's function-time-dependent density functional theory approach. J Chem Phys. 2008 Mar 28; 128(12):124705. PMID: 18376958.
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    39. Galperin M, Ratner MA, Nitzan A, Troisi A. Nuclear coupling and polarization in molecular transport junctions: beyond tunneling to function. Science. 2008 Feb 22; 319(5866):1056-60. PMID: 18292333.
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    40. Yeganeh S, Galperin M, Ratner MA. Switching in molecular transport junctions: polarization response. J Am Chem Soc. 2007 Oct 31; 129(43):13313-20. PMID: 17915864.
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    41. Galperin M, Nitzan A. Optical properties of current carrying molecular wires. J Chem Phys. 2006 Jun 21; 124(23):234709. PMID: 16821943.
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    42. Galperin M, Nitzan A, Ratner MA. Molecular transport junctions: current from electronic excitations in the leads. Phys Rev Lett. 2006 Apr 28; 96(16):166803. PMID: 16712256.
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    43. Galperin M, Nitzan A. Current-induced light emission and light-induced current in molecular-tunneling junctions. Phys Rev Lett. 2005 Nov 11; 95(20):206802. PMID: 16384081.
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    44. Galperin M, Nitzan A, Ratner MA, Stewart DR. Molecular transport junctions: asymmetry in inelastic tunneling processes. J Phys Chem B. 2005 May 05; 109(17):8519-22. PMID: 16852002.
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    45. Galperin M, Beratan DN. Simulation of scanning tunneling microscope images of 1,3-cyclohexadiene bound to a silicon surface. J Phys Chem B. 2005 Feb 03; 109(4):1473-80. PMID: 16851118.
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    46. Galperin M, Ratner MA, Nitzan A. Hysteresis, switching, and negative differential resistance in molecular junctions: a polaron model. Nano Lett. 2005 Jan; 5(1):125-30. PMID: 15792425.
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    47. Galperin M, Ratner MA, Nitzan A. Inelastic electron tunneling spectroscopy in molecular junctions: peaks and dips. J Chem Phys. 2004 Dec 15; 121(23):11965-79. PMID: 15634159.
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    48. Galperin M, Nitzan A. NEGF-HF method in molecular junction property calculations. Ann N Y Acad Sci. 2003 Dec; 1006:48-67. PMID: 14976009.
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    49. Galperin MY, Jedrzejas MJ. Conserved core structure and active site residues in alkaline phosphatase superfamily enzymes. Proteins. 2001 Dec 01; 45(4):318-24. PMID: 11746679.
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    50. Jordan IK, Natale DA, Koonin EV, Galperin MY. Independent evolution of heavy metal-associated domains in copper chaperones and copper-transporting atpases. J Mol Evol. 2001 Dec; 53(6):622-33. PMID: 11677622.
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    51. Galperin MY, Nikolskaya AN, Koonin EV. Novel domains of the prokaryotic two-component signal transduction systems. FEMS Microbiol Lett. 2001 Sep 11; 203(1):11-21. PMID: 11557134.
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    52. Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV. The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res. 2001 Jan 01; 29(1):22-8. PMID: 11125040.
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    53. Galperin MY. Conserved 'hypothetical' proteins: new hints and new puzzles. Comp Funct Genomics. 2001; 2(1):14-8. PMID: 18628897.
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    54. Galperin MY, Koonin EV. Comparative genome analysis. Methods Biochem Anal. 2001; 43:359-92. PMID: 11449732.
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    55. Natale DA, Shankavaram UT, Galperin MY, Wolf YI, Aravind L, Koonin EV. Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs). Genome Biol. 2000; 1(5):RESEARCH0009. PMID: 11178258.
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    56. Galperin MY, Grishin NV. The synthetase domains of cobalamin biosynthesis amidotransferases cobB and cobQ belong to a new family of ATP-dependent amidoligases, related to dethiobiotin synthetase. Proteins. 2000 Nov 01; 41(2):238-47. PMID: 10966576.
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    57. Galperin MY, Koonin EV. Who's your neighbor? New computational approaches for functional genomics. Nat Biotechnol. 2000 Jun; 18(6):609-13. PMID: 10835597.
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    58. Galperin MY, Aravind L, Koonin EV. Aldolases of the DhnA family: a possible solution to the problem of pentose and hexose biosynthesis in archaea. FEMS Microbiol Lett. 2000 Feb 15; 183(2):259-64. PMID: 10675594.
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    59. Tatusov RL, Galperin MY, Natale DA, Koonin EV. The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 2000 Jan 01; 28(1):33-6. PMID: 10592175.
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    60. Natale DA, Galperin MY, Tatusov RL, Koonin EV. Using the COG database to improve gene recognition in complete genomes. Genetica. 2000; 108(1):9-17. PMID: 11145426.
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    61. Galperin MY, Koonin EV. Searching for drug targets in microbial genomes. Curr Opin Biotechnol. 1999 Dec; 10(6):571-8. PMID: 10600691.
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    62. Galperin MY, Natale DA, Aravind L, Koonin EV. A specialized version of the HD hydrolase domain implicated in signal transduction. J Mol Microbiol Biotechnol. 1999 Nov; 1(2):303-5. PMID: 10943560.
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    63. Makarova KS, Aravind L, Galperin MY, Grishin NV, Tatusov RL, Wolf YI, Koonin EV. Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. Genome Res. 1999 Jul; 9(7):608-28. PMID: 10413400.
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    64. Galperin MY. Bioinformatics for all! ABRF meeting: Bioinformatics and Biomolecular Technologies: linking genomes, proteomes and biochemistry, Durham, North Carolina, USA, 19-22 March 1999. Association of Biomolecular Resource Facilities. Trends Genet. 1999 Jul; 15(7):257-8. PMID: 10475853.
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    65. Galperin MY, Koonin EV. Functional genomics and enzyme evolution. Homologous and analogous enzymes encoded in microbial genomes. Genetica. 1999; 106(1-2):159-70. PMID: 10710722.
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    66. Valenzuela JG, Charlab R, Galperin MY, Ribeiro JM. Purification, cloning, and expression of an apyrase from the bed bug Cimex lectularius. A new type of nucleotide-binding enzyme. J Biol Chem. 1998 Nov 13; 273(46):30583-90. PMID: 9804829.
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    67. Galperin MY, Brenner SE. Using metabolic pathway databases for functional annotation. Trends Genet. 1998 Aug; 14(8):332-3. PMID: 9724967.
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    68. Galperin MY, Walker DR, Koonin EV. Analogous enzymes: independent inventions in enzyme evolution. Genome Res. 1998 Aug; 8(8):779-90. PMID: 9724324.
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    69. Galperin MY, Bairoch A, Koonin EV. A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases. Protein Sci. 1998 Aug; 7(8):1829-35. PMID: 10082381.
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    70. Koonin EV, Tatusov RL, Galperin MY. Beyond complete genomes: from sequence to structure and function. Curr Opin Struct Biol. 1998 Jun; 8(3):355-63. PMID: 9666332.
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    71. Aravind L, Galperin MY, Koonin EV. The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold. Trends Biochem Sci. 1998 Apr; 23(4):127-9. PMID: 9584613.
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    72. Galperin MY, Koonin EV. Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement and operon disruption. In Silico Biol. 1998; 1(1):55-67. PMID: 11471243.
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    73. Galperin MY, Koonin EV. A diverse superfamily of enzymes with ATP-dependent carboxylate-amine/thiol ligase activity. Protein Sci. 1997 Dec; 6(12):2639-43. PMID: 9416615.
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    74. Koonin EV, Galperin MY. Prokaryotic genomes: the emerging paradigm of genome-based microbiology. Curr Opin Genet Dev. 1997 Dec; 7(6):757-63. PMID: 9468784.
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    75. Koonin EV, Mushegian AR, Galperin MY, Walker DR. Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea. Mol Microbiol. 1997 Aug; 25(4):619-37. PMID: 9379893.
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    76. A. O. Anokhin, M. L. Galperin, Yu. N. Gornostyrev, .Localized electronic states and their influence on defect interaction in crystals. The Physics of Metals and Metallography. 1995; 79(3):242-254.
    77. A. O. Anokhin, M. L. Galperin, Yu. N. Gornostyrev, M. I. Katsnelson, A. V. Trefilov.Possible localization of electrons at dislocations, disclinations, and grain boundaries in metals. JETP Letters. 1994; 59(5):369-373.