Loading...

Matthew Haynes

SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
vCardDownload vCard

    Collapse Bibliographic 
    Collapse Publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
    Newest   |   Oldest   |   Most Cited   |   Most Discussed   |   Timeline   |   Field Summary   |   Plain Text
    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Phage Phenomics: Physiological Approaches to Characterize Novel Viral Proteins. J Vis Exp. 2015 Jun 11; (100):e52854. Sanchez SE, Cuevas DA, Rostron JE, Liang TY, Pivaroff CG, Haynes MR, Nulton J, Felts B, Bailey BA, Salamon P, Edwards RA, Burgin AB, Segall AM, Rohwer F. PMID: 26132888.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    2. Purifying the impure: sequencing metagenomes and metatranscriptomes from complex animal-associated samples. J Vis Exp. 2014 Dec 22; (94). Lim YW, Haynes M, Furlan M, Robertson CE, Harris JK, Rohwer F. PMID: 25549184.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimals
    3. Species-specific viromes in the ancestral holobiont Hydra. PLoS One. 2014; 9(10):e109952. Grasis JA, Lachnit T, Anton-Erxleben F, Lim YW, Schmieder R, Fraune S, Franzenburg S, Insua S, Machado G, Haynes M, Little M, Kimble R, Rosenstiel P, Rohwer FL, Bosch TC. PMID: 25343582.
      View in: PubMed   Mentions: 19     Fields:    Translation:AnimalsCells
    4. Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors. Proc Natl Acad Sci U S A. 2014 Jul 15; 111(28):10227-32. Kelly LW, Williams GJ, Barott KL, Carlson CA, Dinsdale EA, Edwards RA, Haas AF, Haynes M, Lim YW, McDole T, Nelson CE, Sala E, Sandin SA, Smith JE, Vermeij MJ, Youle M, Rohwer F. PMID: 24982156.
      View in: PubMed   Mentions: 54     Fields:    Translation:CellsPHPublic Health
    5. Clinical insights from metagenomic analysis of sputum samples from patients with cystic fibrosis. J Clin Microbiol. 2014 Feb; 52(2):425-37. Lim YW, Evangelista JS, Schmieder R, Bailey B, Haynes M, Furlan M, Maughan H, Edwards R, Rohwer F, Conrad D. PMID: 24478471.
      View in: PubMed   Mentions: 44     Fields:    Translation:HumansAnimalsCells
    6. Mechanistic model of Rothia mucilaginosa adaptation toward persistence in the CF lung, based on a genome reconstructed from metagenomic data. PLoS One. 2013; 8(5):e64285. Lim YW, Schmieder R, Haynes M, Furlan M, Matthews TD, Whiteson K, Poole SJ, Hayes CS, Low DA, Maughan H, Edwards R, Conrad D, Rohwer F. PMID: 23737977.
      View in: PubMed   Mentions: 18     Fields:    Translation:HumansCells
    7. Identification of a novel human papillomavirus by metagenomic analysis of samples from patients with febrile respiratory illness. PLoS One. 2013; 8(3):e58404. Mokili JL, Dutilh BE, Lim YW, Schneider BS, Taylor T, Haynes MR, Metzgar D, Myers CA, Blair PJ, Nosrat B, Wolfe ND, Rohwer F. PMID: 23554892.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansCellsCTClinical Trials
    8. Cystic fibrosis therapy: a community ecology perspective. Am J Respir Cell Mol Biol. 2013 Feb; 48(2):150-6. Conrad D, Haynes M, Salamon P, Rainey PB, Youle M, Rohwer F. PMID: 23103995.
      View in: PubMed   Mentions: 37     Fields:    Translation:HumansCells
    9. Metagenomics and metatranscriptomics: windows on CF-associated viral and microbial communities. J Cyst Fibros. 2013 Mar; 12(2):154-64. Lim YW, Schmieder R, Haynes M, Willner D, Furlan M, Youle M, Abbott K, Edwards R, Evangelista J, Conrad D, Rohwer F. PMID: 22951208.
      View in: PubMed   Mentions: 57     Fields:    Translation:HumansCells
    10. Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome. ISME J. 2012 May; 6(5):915-26. Pride DT, Salzman J, Haynes M, Rohwer F, Davis-Long C, White RA, Loomer P, Armitage GC, Relman DA. PMID: 22158393.
      View in: PubMed   Mentions: 98     Fields:    Translation:HumansCells
    11. Case studies of the spatial heterogeneity of DNA viruses in the cystic fibrosis lung. Am J Respir Cell Mol Biol. 2012 Feb; 46(2):127-31. Willner D, Haynes MR, Furlan M, Hanson N, Kirby B, Lim YW, Rainey PB, Schmieder R, Youle M, Conrad D, Rohwer F. PMID: 21980056.
      View in: PubMed   Mentions: 42     Fields:    Translation:HumansCells
    12. Spatial distribution of microbial communities in the cystic fibrosis lung. ISME J. 2012 Feb; 6(2):471-4. Willner D, Haynes MR, Furlan M, Schmieder R, Lim YW, Rainey PB, Rohwer F, Conrad D. PMID: 21796216.
      View in: PubMed   Mentions: 72     Fields:    Translation:Humans
    13. Viruses in the faecal microbiota of monozygotic twins and their mothers. Nature. 2010 Jul 15; 466(7304):334-8. Reyes A, Haynes M, Hanson N, Angly FE, Heath AC, Rohwer F, Gordon JI. PMID: 20631792.
      View in: PubMed   Mentions: 370     Fields:    Translation:HumansCells
    14. Metagenomic detection of phage-encoded platelet-binding factors in the human oral cavity. Proc Natl Acad Sci U S A. 2011 Mar 15; 108 Suppl 1:4547-53. Willner D, Furlan M, Schmieder R, Grasis JA, Pride DT, Relman DA, Angly FE, McDole T, Mariella RP, Rohwer F, Haynes M. PMID: 20547834.
      View in: PubMed   Mentions: 52     Fields:    Translation:HumansCells
    15. Viral and microbial community dynamics in four aquatic environments. ISME J. 2010 Jun; 4(6):739-51. Rodriguez-Brito B, Li L, Wegley L, Furlan M, Angly F, Breitbart M, Buchanan J, Desnues C, Dinsdale E, Edwards R, Felts B, Haynes M, Liu H, Lipson D, Mahaffy J, Martin-Cuadrado AB, Mira A, Nulton J, Pasic L, Rayhawk S, Rodriguez-Mueller J, Rodriguez-Valera F, Salamon P, Srinagesh S, Thingstad TF, Tran T, Thurber RV, Willner D, Youle M, Rohwer F. PMID: 20147985.
      View in: PubMed   Mentions: 141     Fields:    Translation:CellsPHPublic Health
    16. Metatranscriptomic array analysis of 'Candidatus Accumulibacter phosphatis'-enriched enhanced biological phosphorus removal sludge. Environ Microbiol. 2010 May; 12(5):1205-17. He S, Kunin V, Haynes M, Martin HG, Ivanova N, Rohwer F, Hugenholtz P, McMahon KD. PMID: 20148930.
      View in: PubMed   Mentions: 21     Fields:    Translation:CellsPHPublic Health
    17. The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLoS Comput Biol. 2009 Dec; 5(12):e1000593. Angly FE, Willner D, Prieto-Davó A, Edwards RA, Schmieder R, Vega-Thurber R, Antonopoulos DA, Barott K, Cottrell MT, Desnues C, Dinsdale EA, Furlan M, Haynes M, Henn MR, Hu Y, Kirchman DL, McDole T, McPherson JD, Meyer F, Miller RM, Mundt E, Naviaux RK, Rodriguez-Mueller B, Stevens R, Wegley L, Zhang L, Zhu B, Rohwer F. PMID: 20011103.
      View in: PubMed   Mentions: 94     Fields:    
    18. Metagenomic analysis of respiratory tract DNA viral communities in cystic fibrosis and non-cystic fibrosis individuals. PLoS One. 2009 Oct 09; 4(10):e7370. Willner D, Furlan M, Haynes M, Schmieder R, Angly FE, Silva J, Tammadoni S, Nosrat B, Conrad D, Rohwer F. PMID: 19816605.
      View in: PubMed   Mentions: 162     Fields:    Translation:Humans
    19. Photosystem I gene cassettes are present in marine virus genomes. Nature. 2009 Sep 10; 461(7261):258-262. Sharon I, Alperovitch A, Rohwer F, Haynes M, Glaser F, Atamna-Ismaeel N, Pinter RY, Partensky F, Koonin EV, Wolf YI, Nelson N, Béjà O. PMID: 19710652.
      View in: PubMed   Mentions: 69     Fields:    Translation:CellsPHPublic Health
    20. Laboratory procedures to generate viral metagenomes. Nat Protoc. 2009; 4(4):470-83. Thurber RV, Haynes M, Breitbart M, Wegley L, Rohwer F. PMID: 19300441.
      View in: PubMed   Mentions: 168     Fields:    Translation:Cells
    21. Metagenomic analysis indicates that stressors induce production of herpes-like viruses in the coral Porites compressa. Proc Natl Acad Sci U S A. 2008 Nov 25; 105(47):18413-8. Vega Thurber RL, Barott KL, Hall D, Liu H, Rodriguez-Mueller B, Desnues C, Edwards RA, Haynes M, Angly FE, Wegley L, Rohwer FL. PMID: 19017800.
      View in: PubMed   Mentions: 66     Fields:    Translation:AnimalsCells
    22. Metagenomic analysis of lysogeny in Tampa Bay: implications for prophage gene expression. PLoS One. 2008 Sep 23; 3(9):e3263. McDaniel L, Breitbart M, Mobberley J, Long A, Haynes M, Rohwer F, Paul JH. PMID: 18810270.
      View in: PubMed   Mentions: 22     Fields:    Translation:Cells
    23. Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico. Environ Microbiol. 2009 Jan; 11(1):16-34. Breitbart M, Hoare A, Nitti A, Siefert J, Haynes M, Dinsdale E, Edwards R, Souza V, Rohwer F, Hollander D. PMID: 18764874.
      View in: PubMed   Mentions: 58     Fields:    
    24. Viral diversity and dynamics in an infant gut. Res Microbiol. 2008 Jun; 159(5):367-73. Breitbart M, Haynes M, Kelley S, Angly F, Edwards RA, Felts B, Mahaffy JM, Mueller J, Nulton J, Rayhawk S, Rodriguez-Brito B, Salamon P, Rohwer F. PMID: 18541415.
      View in: PubMed   Mentions: 101     Fields:    Translation:HumansCells
    25. The airborne metagenome in an indoor urban environment. PLoS One. 2008 Apr 02; 3(4):e1862. Tringe SG, Zhang T, Liu X, Yu Y, Lee WH, Yap J, Yao F, Suan ST, Ing SK, Haynes M, Rohwer F, Wei CL, Tan P, Bristow J, Rubin EM, Ruan Y. PMID: 18382653.
      View in: PubMed   Mentions: 61     Fields:    Translation:HumansPHPublic Health
    26. Functional metagenomic profiling of nine biomes. Nature. 2008 Apr 03; 452(7187):629-32. Dinsdale EA, Edwards RA, Hall D, Angly F, Breitbart M, Brulc JM, Furlan M, Desnues C, Haynes M, Li L, McDaniel L, Moran MA, Nelson KE, Nilsson C, Olson R, Paul J, Brito BR, Ruan Y, Swan BK, Stevens R, Valentine DL, Thurber RV, Wegley L, White BA, Rohwer F. PMID: 18337718.
      View in: PubMed   Mentions: 325     Fields:    Translation:AnimalsCells
    27. Biodiversity and biogeography of phages in modern stromatolites and thrombolites. Nature. 2008 Mar 20; 452(7185):340-3. Desnues C, Rodriguez-Brito B, Rayhawk S, Kelley S, Tran T, Haynes M, Liu H, Furlan M, Wegley L, Chau B, Ruan Y, Hall D, Angly FE, Edwards RA, Li L, Thurber RV, Reid RP, Siefert J, Souza V, Valentine DL, Swan BK, Breitbart M, Rohwer F. PMID: 18311127.
      View in: PubMed   Mentions: 102     Fields:    Translation:CellsPHPublic Health
    28. Microbial ecology of four coral atolls in the Northern Line Islands. PLoS One. 2008 Feb 27; 3(2):e1584. Dinsdale EA, Pantos O, Smriga S, Edwards RA, Angly F, Wegley L, Hatay M, Hall D, Brown E, Haynes M, Krause L, Sala E, Sandin SA, Thurber RV, Willis BL, Azam F, Knowlton N, Rohwer F. PMID: 18301735.
      View in: PubMed   Mentions: 121     Fields:    Translation:HumansAnimalsPHPublic Health
    29. A bacterial metapopulation adapts locally to phage predation despite global dispersal. Genome Res. 2008 Feb; 18(2):293-7. Kunin V, He S, Warnecke F, Peterson SB, Garcia Martin H, Haynes M, Ivanova N, Blackall LL, Breitbart M, Rohwer F, McMahon KD, Hugenholtz P. PMID: 18077539.
      View in: PubMed   Mentions: 49     Fields:    Translation:Cells
    30. The marine viromes of four oceanic regions. PLoS Biol. 2006 Nov; 4(11):e368. Angly FE, Felts B, Breitbart M, Salamon P, Edwards RA, Carlson C, Chan AM, Haynes M, Kelley S, Liu H, Mahaffy JM, Mueller JE, Nulton J, Olson R, Parsons R, Rayhawk S, Suttle CA, Rohwer F. PMID: 17090214.
      View in: PubMed   Mentions: 346     Fields:    Translation:Cells
    31. Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics. 2006 Mar 20; 7:57. Edwards RA, Rodriguez-Brito B, Wegley L, Haynes M, Breitbart M, Peterson DM, Saar MO, Alexander S, Alexander EC, Rohwer F. PMID: 16549033.
      View in: PubMed   Mentions: 143     Fields:    Translation:Cells
    32. Molecular characterization and expression of vitellogenin receptor from white perch (Morone americana). Biol Reprod. 2004 Jun; 70(6):1720-30. Hiramatsu N, Chapman RW, Lindzey JK, Haynes MR, Sullivan CV. PMID: 14766733.
      View in: PubMed   Mentions: 14     Fields:    Translation:AnimalsCells
    Matthew's Networks
    Concepts (184)
    Derived automatically from this person's publications.
    _
    Co-Authors (6)
    People in Profiles who have published with this person.
    _
    Similar People (60)
    People who share similar concepts with this person.
    _
    Same Department
    Search Department
    _