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Marc Niethammer

Photo of Marc Niethammer
Title(s)Professor, Computer Science and Engineering
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
ORCID ORCID Icon0009-0003-7340-9050 Additional info
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    Collapse Biography 
    Collapse education and training
    Brigham and Women's Hospital, Boston, MAPostdoc12/2007Medical Image Analysis
    Georgia Institute of Technology, Atlanta, GAPh.D.12/2004Electrical and Computer Engineering
    Georgia Institute of Technology, Atlanta, GAM.S.12/2002Applied Mathematics
    Universitaet Stuttgart, Stuttgart, GermanyDipl.-Ing.09/2000Engineering Cybernetics
    Georgia Institute of Technology, Atlanta, GAM.S.08/1999Engineering Science and Mechanics

    Collapse Overview 

    Collapse Research 
    Collapse research activities and funding
    Unified and fair multimodal representation learning for autoimmune diseases
    NIH OT2OD038045Sep 16, 2024 - Sep 15, 2026
    Role: Principal Investigator
    A Pediatric Atlas of Upper Airway Shape
    NIH R21HL172230Aug 1, 2024 - Jul 31, 2026
    Role: Principal Investigator
    A comprehensive imaging genetics framework for osteoarthritis research
    NIH R01AR082684Feb 21, 2024 - Jan 31, 2029
    Role: Principal Investigator
    Large-scale automatic analysis of the OAI magnetic resonance image dataset
    NIH R01AR072013Aug 15, 2017 - Apr 30, 2024
    Role: Principal Investigator
    Automated Assessment of Leptomeningeal Collaterals on CT Angiograms
    NIH R42NS086295Jun 1, 2015 - Aug 31, 2021
    Role: Co-Investigator
    Multimodality Image-Based Assessment System for Traumatic Brain Injury
    NIH/NINDS R44NS081792Jan 1, 2013 - Jul 31, 2017
    Role: Co-Investigator
    Automatic Quantitative Analysis of MR Images of the Knee in Osteoarthritis
    NIH R21AR059890Jul 1, 2011 - Jun 30, 2015
    Role: Principal Investigator
    Developmental Brain Atlas Tools and Data Applied to Humans and Macaques
    NIH R01MH091645Sep 8, 2010 - Mar 31, 2016
    Role: Co-Investigator

    Collapse Bibliographic 
    Collapse selected publications
    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. 4D-computed tomography in the evaluation of dynamic tracheal obstruction in children: A case series. Int J Pediatr Otorhinolaryngol. 2025 Dec; 199:112595. Worden CP, Quinonez Del Cid E, Jiao Y, Benaim EH, Prince A, Sharrock M, Hart C, Kimbell J, Dickerson TA, Niethammer M, Fleck R, Zdanski CJ. PMID: 41202474.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    2. HCDPD: A Heterogeneous Causal Framework for Disease Pattern Detection in Medical Imaging. medRxiv. 2025 Apr 16. Liu R, Shi C, Song R, Niethammer M, Li T, Zhu H. PMID: 40321273; PMCID: PMC12047935.
      View in: PubMed   Mentions:
    3. Investigating the relationship between radiographic joint space width loss and deep learning-derived magnetic resonance imaging-based cartilage thickness loss in the medial weight-bearing region of the tibiofemoral joint. Osteoarthr Cartil Open. 2024 Sep; 6(3):100508. Minnig MCC, Arbeeva L, Niethammer M, Nissman D, Lund JL, Marron JS, Golightly YM, Nelson AE. PMID: 39238657; PMCID: PMC11375264.
      View in: PubMed   Mentions:
    4. Predicting early breast cancer recurrence from histopathological images in the Carolina Breast Cancer Study. NPJ Breast Cancer. 2023 Nov 11; 9(1):92. Shi Y, Olsson LT, Hoadley KA, Calhoun BC, Marron JS, Geradts J, Niethammer M, Troester MA. PMID: 37952058; PMCID: PMC10640636.
      View in: PubMed   Mentions: 7  
    5. MRIS: A Multi-modal Retrieval Approach for Image Synthesis on Diverse Modalities. Med Image Comput Comput Assist Interv. 2023 Oct; 14229:271-281. Chen B, Niethammer M. PMID: 39247791; PMCID: PMC11378323.
      View in: PubMed   Mentions:    Fields:    
    6. SimpleClick: Interactive Image Segmentation with Simple Vision Transformers. Proc IEEE Int Conf Comput Vis. 2023 Oct; 2023:22233-22243. Liu Q, Xu Z, Bertasius G, Niethammer M. PMID: 39247160; PMCID: PMC11378330.
      View in: PubMed   Mentions: 12  
    7. Charting Aging Trajectories of Knee Cartilage Thickness for Early Osteoarthritis Risk Prediction: An MRI Study from the Osteoarthritis Initiative Cohort. medRxiv. 2023 Sep 13. Li T, Luo T, Chen B, Huang C, Shen Z, Xu Z, Nissman D, Golightly YM, Nelson AE, Niethammer M, Zhu H. PMID: 37745529; PMCID: PMC10516090.
      View in: PubMed   Mentions:
    8. GradICON: Approximate Diffeomorphisms via Gradient Inverse Consistency. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2023 Jun; 2023:18084-18094. Tian L, Greer H, Vialard FX, Kwitt R, Estépar RSJ, Rushmore RJ, Makris N, Bouix S, Niethammer M. PMID: 39247628; PMCID: PMC11378329.
      View in: PubMed   Mentions: 3  
    9. Patterns of variation among baseline femoral and tibial cartilage thickness and clinical features: Data from the osteoarthritis initiative. Osteoarthr Cartil Open. 2023 Mar; 5(1):100334. Keefe TH, Minnig MC, Arbeeva L, Niethammer M, Xu Z, Shen Z, Chen B, Nissman DB, Golightly YM, Marron JS, Nelson AE. PMID: 36817090; PMCID: PMC9932103.
      View in: PubMed   Mentions: 3  
    10. Optimal transport features for morphometric population analysis. Med Image Anal. 2023 02; 84:102696. Gerber S, Niethammer M, Ebrahim E, Piven J, Dager SR, Styner M, Aylward S, Enquobahrie A. PMID: 36495600; PMCID: PMC9829456.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    11. PseudoClick: Interactive Image Segmentation with Click Imitation. Comput Vis ECCV. 2022; 13666:728-745. Liu Q, Zheng M, Planche B, Karanam S, Chen T, Niethammer M, Wu Z. PMID: 41367946; PMCID: PMC12685406.
      View in: PubMed   Mentions:
    12. Differential Role for Hippocampal Subfields in Alzheimer's Disease Progression Revealed with Deep Learning. Cereb Cortex. 2022 01 22; 32(3):467-478. Kwak K, Niethammer M, Giovanello KS, Styner M, Dayan E, Alzheimer's Disease Neuroimaging Initiative. PMID: 34322704; PMCID: PMC8805839.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    13. DADP: Dynamic abnormality detection and progression for longitudinal knee magnetic resonance images from the Osteoarthritis Initiative. Med Image Anal. 2022 04; 77:102343. Huang C, Xu Z, Shen Z, Luo T, Li T, Nissman D, Nelson A, Golightly Y, Niethammer M, Zhu H. PMID: 35026528; PMCID: PMC8901568.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    14. JOINT AND INDIVIDUAL ANALYSIS OF BREAST CANCER HISTOLOGIC IMAGES AND GENOMIC COVARIATES. Ann Appl Stat. 2021 Dec; 15(4):1697-1722. Carmichael I, Calhoun BC, Hoadley KA, Troester MA, Geradts J, Couture HD, Olsson L, Perou CM, Niethammer M, Hannig J, Marron JS. PMID: 35432688; PMCID: PMC9007558.
      View in: PubMed   Mentions: 3  
    15. Perfusion Imaging: An Advection Diffusion Approach. IEEE Trans Med Imaging. 2021 12; 40(12):3424-3435. Liu P, Lee YZ, Aylward SR, Niethammer M. PMID: 34086563; PMCID: PMC8686530.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    16. A Feature-based Affine Registration Method for Capturing Background Lung Tissue Deformation for Ground Glass Nodule Tracking. Comput Methods Biomech Biomed Eng Imaging Vis. 2022; 10(5):521-539. Ben-Zikri YK, Helguera M, Fetzer D, Shrier DA, Aylward SR, Chittajallu D, Niethammer M, Cahill ND, Linte CA. PMID: 36465979; PMCID: PMC9718421.
      View in: PubMed   Mentions:
    17. ICON: Learning Regular Maps Through Inverse Consistency. Proc IEEE Int Conf Comput Vis. 2021 Oct; 2021:3376-3385. Greer H, Kwitt R, Vialard FX, Niethammer M. PMID: 35355618; PMCID: PMC8963462.
      View in: PubMed   Mentions: 5  
    18. VOTENET++: REGISTRATION REFINEMENT FOR MULTI-ATLAS SEGMENTATION. Proc IEEE Int Symp Biomed Imaging. 2021 Apr; 2021:275-279. Ding Z, Niethammer M. PMID: 39247161; PMCID: PMC11378331.
      View in: PubMed   Mentions: 1  
    19. Deep-learning-based image registration and automatic segmentation of organs-at-risk in cone-beam CT scans from high-dose radiation treatment of pancreatic cancer. Med Phys. 2021 Jun; 48(6):3084-3095. Han X, Hong J, Reyngold M, Crane C, Cuaron J, Hajj C, Mann J, Zinovoy M, Greer H, Yorke E, Mageras G, Niethammer M. PMID: 33905539; PMCID: PMC9282672.
      View in: PubMed   Mentions: 18     Fields:    Translation:Humans
    20. General anaesthesia during infancy reduces white matter micro-organisation in developing rhesus monkeys. Br J Anaesth. 2021 04; 126(4):845-853. Young JT, Vlasova RM, Howell BR, Knickmeyer RC, Morin E, Kuitchoua KI, Lubach GR, Noel J, Hu X, Shi Y, Caudill G, Alexander AL, Niethammer M, Paule MG, Coe CL, Sanchez M, Styner M. PMID: 33549320; PMCID: PMC8132881.
      View in: PubMed   Mentions: 13     Fields:    Translation:Animals
    21. Computational methods for visualizing and measuring verapamil efficacy for cerebral vasospasm. Sci Rep. 2020 11 02; 10(1):18780. Abumoussa A, Flores A, Ho J, Niethammer M, Sasaki-Adams D, Lee YZ. PMID: 33139791; PMCID: PMC7606481.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    22. Anatomical Data Augmentation via Fluid-based Image Registration. Med Image Comput Comput Assist Interv. 2020 Oct; 12263:318-328. Shen Z, Xu Z, Olut S, Niethammer M. PMID: 39253359; PMCID: PMC11381936.
      View in: PubMed   Mentions: 1     Fields:    
    23. A Deep Network for Joint Registration and Reconstruction of Images with Pathologies. Mach Learn Med Imaging. 2020 Oct; 12436:342-352. Han X, Shen Z, Xu Z, Bakas S, Akbari H, Bilello M, Davatzikos C, Niethammer M. PMID: 34382033; PMCID: PMC8354331.
      View in: PubMed   Mentions: 1  
    24. VOTENET+ : AN IMPROVED DEEP LEARNING LABEL FUSION METHOD FOR MULTI-ATLAS SEGMENTATION. Proc IEEE Int Symp Biomed Imaging. 2020 Apr; 2020:363-367. Ding Z, Han X, Niethammer M. PMID: 35261721; PMCID: PMC8899817.
      View in: PubMed   Mentions: 4  
    25. Metric Learning for Image Registration. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2019 Jun; 2019:8455-8464. Niethammer M, Kwitt R, Vialard FX. PMID: 32523327; PMCID: PMC7286567.
      View in: PubMed   Mentions: 26  
    26. Networks for Joint Affine and Non-parametric Image Registration. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2019 Jun; 2019:4219-4228. Shen Z, Han X, Xu Z, Niethammer M. PMID: 32523326; PMCID: PMC7286599.
      View in: PubMed   Mentions: 23  
    27. Region-specific Diffeomorphic Metric Mapping. Adv Neural Inf Process Syst. 2019 Dec; 32:1098-1108. Shen Z, Vialard FX, Niethammer M. PMID: 36081637; PMCID: PMC9450565.
      View in: PubMed   Mentions: 9  
    28. DeepAtlas: Joint Semi-Supervised Learning of Image Registration and Segmentation. Med Image Comput Comput Assist Interv. 2019 Oct; 11765:420-429. Xu Z, Niethammer M. PMID: 39247524; PMCID: PMC11378322.
      View in: PubMed   Mentions: 22     Fields:    
    29. VoteNet: A Deep Learning Label Fusion Method for Multi-Atlas Segmentation. Med Image Comput Comput Assist Interv. 2019 Oct; 11766:202-210. Ding Z, Han X, Niethammer M. PMID: 36108312; PMCID: PMC9450564.
      View in: PubMed   Mentions: 14     Fields:    
    30. Fast predictive simple geodesic regression. Med Image Anal. 2019 08; 56:193-209. Ding Z, Fleishman G, Yang X, Thompson P, Kwitt R, Niethammer M, Alzheimer’s Disease Neuroimaging Initiative. PMID: 31252162; PMCID: PMC6661182.
      View in: PubMed   Mentions: 3     Fields:    
    31. Multiseg pipeline: automatic tissue segmentation of brain MR images with subject-specific atlases. Proc SPIE Int Soc Opt Eng. 2019 Feb; 10953. Pham K, Yang X, Niethammer M, Prieto JC, Styner M. PMID: 31057202; PMCID: PMC6497158.
      View in: PubMed   Mentions: 4  
    32. Patient-Specific Registration of Pre-operative and Post-recurrence Brain Tumor MRI Scans. Brainlesion. 2019; 11383:105-114. Han X, Bakas S, Kwitt R, Aylward S, Akbari H, Bilello M, Davatzikos C, Niethammer M. PMID: 31259320; PMCID: PMC6599177.
      View in: PubMed   Mentions: 4  
    33. Contextual Additive Networks to Efficiently Boost 3D Image Segmentations. Deep Learn Med Image Anal Multimodal Learn Clin Decis Support (2018). 2018 Sep; 11045:92-100. Xu Z, Shen Z, Niethammer M. PMID: 31236544; PMCID: PMC6590074.
      View in: PubMed   Mentions: 3  
    34. Exploratory Population Analysis with Unbalanced Optimal Transport. Med Image Comput Comput Assist Interv. 2018 Sep; 11072:464-472. Gerber S, Niethammer M, Styner M, Aylward S. PMID: 31172134; PMCID: PMC6547365.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    35. Image analysis with deep learning to predict breast cancer grade, ER status, histologic subtype, and intrinsic subtype. NPJ Breast Cancer. 2018; 4:30. Couture HD, Williams LA, Geradts J, Nyante SJ, Butler EN, Marron JS, Perou CM, Troester MA, Niethammer M. PMID: 30182055; PMCID: PMC6120869.
      View in: PubMed   Mentions: 147  
    36. Compressing Networks with Super Nodes. Sci Rep. 2018 Jul 18; 8(1):10892. Stanley N, Kwitt R, Niethammer M, Mucha PJ. PMID: 30022035; PMCID: PMC6052167.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    37. SCOLIOSIS SCREENING AND MONITORING USING SELF CONTAINED ULTRASOUND AND NEURAL NETWORKS. Proc IEEE Int Symp Biomed Imaging. 2018 Apr; 2018:1500-1503. Greer H, Gerber S, Niethammer M, Kwitt R, McCormick M, Chittajallu D, Siekierski N, Oetgen M, Cleary K, Aylward S. PMID: 29899817; PMCID: PMC5994762.
      View in: PubMed   Mentions: 5  
    38. Brain extraction from normal and pathological images: A joint PCA/Image-Reconstruction approach. Neuroimage. 2018 08 01; 176:431-445. Han X, Kwitt R, Aylward S, Bakas S, Menze B, Asturias A, Vespa P, Van Horn J, Niethammer M. PMID: 29730494; PMCID: PMC6036616.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    39. Image-Based Methods for Phase Estimation, Gating, and Temporal Superresolution of Cardiac Ultrasound. IEEE Trans Biomed Eng. 2019 01; 66(1):72-79. Chittajallu DR, McCormick M, Gerber S, Czernuszewicz TJ, Gessner R, Willis MS, Niethammer M, Kwitt R, Aylward SR. PMID: 29993406; PMCID: PMC6340645.
      View in: PubMed   Mentions: 2     Fields:    Translation:Animals
    40. ACTIVE MEAN FIELDS FOR PROBABILISTIC IMAGE SEGMENTATION: CONNECTIONS WITH CHAN-VESE AND RUDIN-OSHER-FATEMI MODELS. SIAM J Imaging Sci. 2017; 10(3):1069-1103. Niethammer M, Pohl KM, Janoos F, Wells WM. PMID: 29051796; PMCID: PMC5642306.
      View in: PubMed   Mentions: 2  
    41. Quicksilver: Fast predictive image registration - A deep learning approach. Neuroimage. 2017 09; 158:378-396. Yang X, Kwitt R, Styner M, Niethammer M. PMID: 28705497; PMCID: PMC6036629.
      View in: PubMed   Mentions: 159     Fields:    Translation:Humans
    42. EFFICIENT REGISTRATION OF PATHOLOGICAL IMAGES: A JOINT PCA/IMAGE-RECONSTRUCTION APPROACH. Proc IEEE Int Symp Biomed Imaging. 2017 Apr; 2017:10-14. Han X, Yang X, Aylward S, Kwitt R, Niethammer M. PMID: 29887971; PMCID: PMC5989307.
      View in: PubMed   Mentions: 6  
    43. The UNC-Wisconsin Rhesus Macaque Neurodevelopment Database: A Structural MRI and DTI Database of Early Postnatal Development. Front Neurosci. 2017; 11:29. Young JT, Shi Y, Niethammer M, Grauer M, Coe CL, Lubach GR, Davis B, Budin F, Knickmeyer RC, Alexander AL, Styner MA. PMID: 28210206; PMCID: PMC5288388.
      View in: PubMed   Mentions: 34  
    44. Registration of Pathological Images. Simul Synth Med Imaging. 2016 10; 9968:97-107. Yang X, Han X, Park E, Aylward S, Kwitt R, Niethammer M. PMID: 29896582; PMCID: PMC5994389.
      View in: PubMed   Mentions: 9  
    45. Parametric Regression on the Grassmannian. IEEE Trans Pattern Anal Mach Intell. 2016 11; 38(11):2284-2297. Hong Y, Kwitt R, Singh N, Vasconcelos N, Niethammer M. PMID: 26766216.
      View in: PubMed   Mentions: 3     Fields:    
    46. Quantitative assessment of the upper airway in infants and children with subglottic stenosis. Laryngoscope. 2016 05; 126(5):1225-31. Zdanski C, Davis S, Hong Y, Miao D, Quammen C, Mitran S, Davis B, Niethammer M, Kimbell J, Pitkin E, Fine J, Fordham L, Vaughn B, Superfine R. PMID: 26226933; PMCID: PMC5257243.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    47. Low-Rank Atlas Image Analyses in the Presence of Pathologies. IEEE Trans Med Imaging. 2015 Dec; 34(12):2583-91. Liu X, Niethammer M, Kwitt R, Singh N, McCormick M, Aylward S. PMID: 26111390; PMCID: PMC4707015.
      View in: PubMed   Mentions: 13     Fields:    Translation:Humans
    48. Robust estimation of group-wise cortical correspondence with an application to macaque and human neuroimaging studies. Front Neurosci. 2015; 9:210. Lyu I, Kim SH, Seong JK, Yoo SW, Evans A, Shi Y, Sanchez M, Niethammer M, Styner MA. PMID: 26113807; PMCID: PMC4462677.
      View in: PubMed   Mentions: 15  
    49. Splines for diffeomorphisms. Med Image Anal. 2015 Oct; 25(1):56-71. Singh N, Vialard FX, Niethammer M. PMID: 25980676.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    50. Shape analysis based on depth-ordering. Med Image Anal. 2015 Oct; 25(1):2-10. Hong Y, Gao Y, Niethammer M, Bouix S. PMID: 25980389; PMCID: PMC4540634.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    51. Diseased Region Detection of Longitudinal Knee Magnetic Resonance Imaging Data. IEEE Trans Med Imaging. 2015 Sep; 34(9):1914-27. Huang C, Shan L, Charles HC, Wirth W, Niethammer M, Zhu H. PMID: 25823031; PMCID: PMC4560622.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    52. Appearance normalization of histology slides. Comput Med Imaging Graph. 2015 Jul; 43:89-98. Vicory J, Couture HD, Thomas NE, Borland D, Marron JS, Woosley J, Niethammer M. PMID: 25863518; PMCID: PMC4769595.
      View in: PubMed   Mentions: 10     Fields:    Translation:Humans
    53. Group Testing for Longitudinal Data. Inf Process Med Imaging. 2015; 24:139-51. Hong Y, Singh N, Kwitt R, Niethammer M. PMID: 26221671.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    54. Large deformation diffeomorphic registration of diffusion-weighted imaging data. Med Image Anal. 2014 Dec; 18(8):1290-8. Zhang P, Niethammer M, Shen D, Yap PT. PMID: 25106710; PMCID: PMC4213863.
      View in: PubMed   Mentions: 12     Fields:    Translation:Humans
    55. Automatic atlas-based three-label cartilage segmentation from MR knee images. Med Image Anal. 2014 Oct; 18(7):1233-46. Shan L, Zach C, Charles C, Niethammer M. PMID: 25128683; PMCID: PMC5025945.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    56. Statistical atlas construction via weighted functional boxplots. Med Image Anal. 2014 May; 18(4):684-98. Hong Y, Davis B, Marron JS, Kwitt R, Singh N, Kimbell JS, Pitkin E, Superfine R, Davis SD, Zdanski CJ, Niethammer M. PMID: 24747271; PMCID: PMC4029168.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    57. PORTR: Pre-operative and post-recurrence brain tumor registration. IEEE Trans Med Imaging. 2014 Mar; 33(3):651-67. Kwon D, Niethammer M, Akbari H, Bilello M, Davatzikos C, Pohl KM. PMID: 24595340; PMCID: PMC4134002.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    58. Splines for diffeomorphic image regression. Med Image Comput Comput Assist Interv. 2014; 17(Pt 2):121-9. Singh N, Niethammer M. PMID: 25485370; PMCID: PMC4979981.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    59. Time-warped geodesic regression. Med Image Comput Comput Assist Interv. 2014; 17(Pt 2):105-12. Hong Y, Singh N, Kwitt R, Niethammer M. PMID: 25485368; PMCID: PMC4885123.
      View in: PubMed   Mentions: 4     Fields:    Translation:HumansAnimals
    60. Geometric-feature-based spectral graph matching in pharyngeal surface registration. Med Image Comput Comput Assist Interv. 2014; 17(Pt 1):259-66. Zhao Q, Pizer S, Niethammer M, Rosenman J. PMID: 25333126; PMCID: PMC4382356.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    61. Low-rank to the rescue - atlas-based analyses in the presence of pathologies. Med Image Comput Comput Assist Interv. 2014; 17(Pt 3):97-104. Liu X, Niethammer M, Kwitt R, McCormick M, Aylward S. PMID: 25320787; PMCID: PMC4857018.
      View in: PubMed   Mentions: 11     Fields:    Translation:Humans
    62. Depth-based shape-analysis. Med Image Comput Comput Assist Interv. 2014; 17(Pt 3):17-24. Hong Y, Gao Y, Niethammer M, Bouix S. PMID: 25320777.
      View in: PubMed   Mentions: 1     Fields:    Translation:Humans
    63. Multi-modal registration for correlative microscopy using image analogies. Med Image Anal. 2014 Aug; 18(6):914-26. Cao T, Zach C, Modla S, Powell D, Czymmek K, Niethammer M. PMID: 24387943; PMCID: PMC4062605.
      View in: PubMed   Mentions: 12     Fields:    Translation:Animals
    64. A new tool improves diagnostic test performance for transmission em evaluation of axonemal dynein arms. Ultrastruct Pathol. 2014 Aug; 38(4):248-55. Funkhouser WK, Niethammer M, Carson JL, Burns KA, Knowles MR, Leigh MW, Zariwala MA, Funkhouser WK. PMID: 23957500; PMCID: PMC3990650.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    65. A locally adaptive regularization based on anisotropic diffusion for deformable image registration of sliding organs. IEEE Trans Med Imaging. 2013 Nov; 32(11):2114-26. Pace DF, Aylward SR, Niethammer M. PMID: 23899632; PMCID: PMC4112204.
      View in: PubMed   Mentions: 21     Fields:    Translation:Humans
    66. Longitudinal image registration with temporally-dependent image similarity measure. IEEE Trans Med Imaging. 2013 Oct; 32(10):1939-51. Csapo I, Davis B, Shi Y, Sanchez M, Styner M, Niethammer M. PMID: 23846465; PMCID: PMC3947578.
      View in: PubMed   Mentions: 7     Fields:    Translation:Animals
    67. A PEDIATRIC AIRWAY ATLAS AND ITS APPLICATION IN SUBGLOTTIC STENOSIS. Proc IEEE Int Symp Biomed Imaging. 2013 Apr; 2013:1206-1209. Hong Y, Niethammer M, Andruejol J, Kimbell JS, Pitkin E, Superfine R, Davis S, Zdanski CJ, Davis B. PMID: 26929791; PMCID: PMC4769591.
      View in: PubMed   Mentions: 6  
    68. Cortical Correspondence via Sulcal Curve-Constrained Spherical Registration with Application to Macaque Studies. Proc SPIE Int Soc Opt Eng. 2013 Mar 13; 8669. Lyu I, Kim SH, Seong JK, Yoo SW, Evans AC, Shi Y, Sanchez M, Niethammer M, Styner M. PMID: 24357916; PMCID: PMC3865241.
      View in: PubMed   Mentions: 3  
    69. Diseased region detection of longitudinal knee MRI data. Inf Process Med Imaging. 2013; 23:632-43. Huang C, Shan L, Charles C, Niethammer M, Zhu H. PMID: 24684005; PMCID: PMC4012563.
      View in: PubMed   Mentions:    Fields:    Translation:Humans
    70. Group-wise cortical correspondence via sulcal curve-constrained entropy minimization. Inf Process Med Imaging. 2013; 23:364-75. Lyu I, Kim SH, Seong JK, Yoo SW, Evans AC, Shi Y, Sanchez M, Niethammer M, Styner MA. PMID: 24683983; PMCID: PMC4003502.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansAnimals
    71. Studying cerebral vasculature using structure proximity and graph kernels. Med Image Comput Comput Assist Interv. 2013; 16(Pt 2):534-41. Kwitt R, Pace D, Niethammer M, Aylward S. PMID: 24579182; PMCID: PMC4154378.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    72. Sparse scale-space decomposition of volume changes in deformations fields. Med Image Comput Comput Assist Interv. 2013; 16(Pt 2):328-35. Lorenzi M, Menze BH, Niethammer M, Ayache N, Pennec X, Alzheimers Disease Neuroimaging Initiative. PMID: 24579157.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    73. Large deformation diffeomorphic registration of diffusion-weighted images with explicit orientation optimization. Med Image Comput Comput Assist Interv. 2013; 16(Pt 2):27-34. Zhang P, Niethammer M, Shen D, Yap PT. PMID: 24579120; PMCID: PMC4082716.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
    74. Weighted functional boxplot with application to statistical atlas construction. Med Image Comput Comput Assist Interv. 2013; 16(Pt 3):584-91. Hong Y, Davis B, Marron JS, Kwitt R, Niethammer M. PMID: 24505809; PMCID: PMC4339062.
      View in: PubMed   Mentions: 2     Fields:    
    75. Large deformation image classification using generalized locality-constrained linear coding. Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):292-9. Zhang P, Wee CY, Niethammer M, Shen D, Yap PT. PMID: 24505678; PMCID: PMC4029352.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    76. Robust multimodal dictionary learning. Med Image Comput Comput Assist Interv. 2013; 16(Pt 1):259-66. Cao T, Jojic V, Modla S, Powell D, Czymmek K, Niethammer M. PMID: 24505674; PMCID: PMC4339052.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    77. AUTOMATIC MULTI-ATLAS-BASED CARTILAGE SEGMENTATION FROM KNEE MR IMAGES. Proc IEEE Int Symp Biomed Imaging. 2012 Dec 31; 2012:1028-1031. Shan L, Charles C, Niethammer M. PMID: 24443678; PMCID: PMC3892911.
      View in: PubMed   Mentions: 6  
    78. Segmentation with area constraints. Med Image Anal. 2013 Jan; 17(1):101-12. Niethammer M, Zach C. PMID: 23084504; PMCID: PMC3656501.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    79. Simulation-based joint estimation of body deformation and elasticity parameters for medical image analysis. IEEE Trans Med Imaging. 2012 Nov; 31(11):2156-2168. Lee HP, Foskey M, Niethammer M, Krajcevski P, Lin M. PMID: 22893381; PMCID: PMC4280085.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    80. Image and statistical analysis of melanocytic histology. Histopathology. 2012 Sep; 61(3):436-44. Miedema J, Marron JS, Niethammer M, Borland D, Woosley J, Coposky J, Wei S, Reisner H, Thomas NE. PMID: 22687043; PMCID: PMC3425719.
      View in: PubMed   Mentions: 6     Fields:    Translation:Humans
    81. Diffusion tensor imaging-based characterization of brain neurodevelopment in primates. Cereb Cortex. 2013 Jan; 23(1):36-48. Shi Y, Short SJ, Knickmeyer RC, Wang J, Coe CL, Niethammer M, Gilmore JH, Zhu H, Styner MA. PMID: 22275483; PMCID: PMC3513950.
      View in: PubMed   Mentions: 42     Fields:    Translation:AnimalsCells
    82. Automatic Atlas-based Three-label Cartilage Segmentation from MR Knee Images. Proc Workshop Math Methods Biomed Image Analysis. 2012; 241-246. Shan L, Charles C, Niethammer M. PMID: 23685704; PMCID: PMC3656482.
      View in: PubMed   Mentions: 1  
    83. Longitudinal image registration with non-uniform appearance change. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):280-8. Csapo I, Davis B, Shi Y, Sanchez M, Styner M, Niethammer M. PMID: 23286141; PMCID: PMC3584325.
      View in: PubMed   Mentions: 3     Fields:    Translation:Animals
    84. Metamorphic geodesic regression. Med Image Comput Comput Assist Interv. 2012; 15(Pt 3):197-205. Hong Y, Joshi S, Sanchez M, Styner M, Niethammer M. PMID: 23286131; PMCID: PMC3584322.
      View in: PubMed   Mentions: 10     Fields:    Translation:Animals
    85. Large deformation diffeomorphic registration of diffusion-weighted images. Med Image Comput Comput Assist Interv. 2012; 15(Pt 2):171-8. Zhang P, Niethammer M, Shen D, Yap PT. PMID: 23286046; PMCID: PMC3771077.
      View in: PubMed   Mentions: 3     Fields:    Translation:Humans
    86. The power of correlative microscopy: multi-modal, multi-scale, multi-dimensional. Curr Opin Struct Biol. 2011 Oct; 21(5):686-93. Caplan J, Niethammer M, Taylor RM, Czymmek KJ. PMID: 21782417; PMCID: PMC3189301.
      View in: PubMed   Mentions: 46     Fields:    Translation:HumansAnimalsCells
    87. Deformable Image Registration of Sliding Organs Using Anisotropic Diffusive Regularization. Proc IEEE Int Symp Biomed Imaging. 2011 Mar 30; 407-413. Pace DF, Enquobahrie A, Yang H, Aylward SR, Niethammer M. PMID: 21785755; PMCID: PMC3141338.
      View in: PubMed   Mentions: 9  
    88. Automatic cortical thickness analysis on rodent brain. Proc SPIE Int Soc Opt Eng. 2011 Mar 15; 7962:7962481-79624811. Lee J, Ehlers C, Crews F, Niethammer M, Budin F, Paniagua B, Sulik K, Johns J, Styner M, Oguz I. PMID: 21909228; PMCID: PMC3168533.
      View in: PubMed   Mentions: 11  
    89. Shape alterations in the striatum in chorea-acanthocytosis. Psychiatry Res. 2011 Apr 30; 192(1):29-36. Walterfang M, Looi JC, Styner M, Walker RH, Danek A, Niethammer M, Evans A, Kotschet K, Rodrigues GR, Hughes A, Velakoulis D. PMID: 21377843; PMCID: PMC3324182.
      View in: PubMed   Mentions: 27     Fields:    Translation:Humans
    90. Shape analysis of the neostriatum in subtypes of frontotemporal lobar degeneration: neuroanatomically significant regional morphologic change. Psychiatry Res. 2011 Feb 28; 191(2):98-111. Looi JC, Walterfang M, Styner M, Niethammer M, Svensson LA, Lindberg O, Ostberg P, Botes L, Orndahl E, Chua P, Velakoulis D, Wahlund LO. PMID: 21237621.
      View in: PubMed   Mentions: 14     Fields:    Translation:Humans
    91. Geodesic regression for image time-series. Med Image Comput Comput Assist Interv. 2011; 14(Pt 2):655-62. Niethammer M, Huang Y, Vialard FX. PMID: 21995085; PMCID: PMC4339064.
      View in: PubMed   Mentions: 50     Fields:    Translation:Humans
    92. Geometric metamorphosis. Med Image Comput Comput Assist Interv. 2011; 14(Pt 2):639-46. Niethammer M, Hart GL, Pace DF, Vespa PM, Irimia A, Van Horn JD, Aylward SR. PMID: 21995083; PMCID: PMC3719851.
      View in: PubMed   Mentions: 17     Fields:    Translation:Humans
    93. Appearance Normalization of Histology Slides. Mach Learn Med Imaging. 2010; 6357:58-66. Niethammer M, Borland D, Marron JS, Woosley J, Thomas NE. PMID: 25360444; PMCID: PMC4211434.
      View in: PubMed   Mentions: 14  
    94. Laplace-Beltrami Eigenvalues and Topological Features of Eigenfunctions for Statistical Shape Analysis. Comput Aided Des. 2009 Oct 01; 41(10):739-755. Reuter M, Wolter FE, Shenton M, Niethammer M. PMID: 20161035; PMCID: PMC2753296.
      View in: PubMed   Mentions: 34  
    95. Continuous Maximal Flows and Wulff Shapes: Application to MRFs. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2009 Jun; 2009:1911-1918. Zach C, Niethammer M, Frahm JM. PMID: 25729263; PMCID: PMC4339955.
      View in: PubMed   Mentions: 6  
    96. Multidimensional classification of hippocampal shape features discriminates Alzheimer's disease and mild cognitive impairment from normal aging. Neuroimage. 2009 Oct 01; 47(4):1476-86. Gerardin E, Chételat G, Chupin M, Cuingnet R, Desgranges B, Kim HS, Niethammer M, Dubois B, Lehéricy S, Garnero L, Eustache F, Colliot O, Alzheimer's Disease Neuroimaging Initiative. PMID: 19463957; PMCID: PMC3001345.
      View in: PubMed   Mentions: 122     Fields:    Translation:Humans
    97. Shape abnormalities of caudate nucleus in schizotypal personality disorder. Schizophr Res. 2009 May; 110(1-3):127-39. Levitt JJ, Styner M, Niethammer M, Bouix S, Koo MS, Voglmaier MM, Dickey CC, Niznikiewicz MA, Kikinis R, McCarley RW, Shenton ME. PMID: 19328654; PMCID: PMC2756791.
      View in: PubMed   Mentions: 15     Fields:    Translation:Humans
    98. Calcium and cyclic nucleotides affect TNF-alpha-induced stem cell migration. Biochem Biophys Res Commun. 2009 May 01; 382(2):241-6. Kaplan E, Min JY, Ke Q, Chen Y, Niethammer M, Rana JS, Malek S, Verheugt FW, Morgan JP. PMID: 19233128; PMCID: PMC2941773.
      View in: PubMed   Mentions:    Fields:    Translation:AnimalsCells
    99. Globally Optimal Finsler Active Contours. Pattern Recognit DAGM. 2009; 5748:552-561. Zach C, Shan L, Niethammer M. PMID: 25722992; PMCID: PMC4339059.
      View in: PubMed   Mentions: 2  
    100. Cortical correspondence with probabilistic fiber connectivity. Inf Process Med Imaging. 2009; 21:651-63. Oguz I, Niethammer M, Cates J, Whitaker R, Fletcher T, Vachet C, Styner M. PMID: 19694301; PMCID: PMC2751643.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    101. Quantitative examination of a novel clustering method using magnetic resonance diffusion tensor tractography. Neuroimage. 2009 Apr 01; 45(2):370-6. Voineskos AN, O'Donnell LJ, Lobaugh NJ, Markant D, Ameis SH, Niethammer M, Mulsant BH, Pollock BG, Kennedy JL, Westin CF, Shenton ME. PMID: 19159690; PMCID: PMC2646811.
      View in: PubMed   Mentions: 28     Fields:    Translation:HumansCells
    102. Near-tubular fiber bundle segmentation for diffusion weighted imaging: segmentation through frame reorientation. Neuroimage. 2009 Mar; 45(1 Suppl):S123-32. Niethammer M, Zach C, Melonakos J, Tannenbaum A. PMID: 19101640; PMCID: PMC2774769.
      View in: PubMed   Mentions: 4     Fields:    Translation:Humans
    103. Restoration of DWI data using a Rician LMMSE estimator. IEEE Trans Med Imaging. 2008 Oct; 27(10):1389-403. Aja-Fernandez S, Niethammer M, Kubicki M, Shenton ME, Westin CF. PMID: 18815091; PMCID: PMC2756835.
      View in: PubMed   Mentions: 39     Fields:    Translation:Humans
    104. Geometric observers for dynamically evolving curves. IEEE Trans Pattern Anal Mach Intell. 2008 Jun; 30(6):1093-108. Niethammer M, Vela PA, Tannenbaum A. PMID: 18421113; PMCID: PMC2796582.
      View in: PubMed   Mentions: 1     Fields:    Translation:Animals
    105. Locally-Constrained Region-Based Methods for DW-MRI Segmentation. Proc IEEE Int Conf Comput Vis. 2007; 1-8. Melonakos J, Niethammer M, Mohan V, Kubicki M, Miller JV, Tannenbaum A. PMID: 23857521; PMCID: PMC3646532.
      View in: PubMed   Mentions: 4  
    106. Outlier rejection for diffusion weighted imaging. Med Image Comput Comput Assist Interv. 2007; 10(Pt 1):161-8. Niethammer M, Bouix S, Aja-Fernández S, Westin CF, Shenton ME. PMID: 18051055; PMCID: PMC2788769.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    107. Global medical shape analysis using the Laplace-Beltrami spectrum. Med Image Comput Comput Assist Interv. 2007; 10(Pt 1):850-7. Niethammer M, Reuter M, Wolter FE, Bouix S, Peinecke N, Koo MS, Shenton ME. PMID: 18051138; PMCID: PMC2782516.
      View in: PubMed   Mentions: 24     Fields:    Translation:Humans
    108. Geodesic-loxodromes for diffusion tensor interpolation and difference measurement. Med Image Comput Comput Assist Interv. 2007; 10(Pt 1):1-9. Kindlmann G, Estépar RS, Niethammer M, Haker S, Westin CF. PMID: 18051037.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    109. Finsler tractography for white matter connectivity analysis of the cingulum bundle. Med Image Comput Comput Assist Interv. 2007; 10(Pt 1):36-43. Melonakos J, Mohan V, Niethammer M, Smith K, Kubicki M, Tannenbaum A. PMID: 18051041; PMCID: PMC3652261.
      View in: PubMed   Mentions: 15     Fields:    Translation:HumansCells
    110. On the detection of simple points in higher dimensions using cubical homology. IEEE Trans Image Process. 2006 Aug; 15(8):2462-9. Niethammer M, Kalies WD, Mischaikow K, Tannenbaum A. PMID: 16900699; PMCID: PMC3660980.
      View in: PubMed   Mentions: 2     Fields:    
    111. Model-based analysis of dispersion curves using chirplets. J Acoust Soc Am. 2006 Apr; 119(4):2122-30. Kuttig H, Niethammer M, Hurlebaus S, Jacobs LJ. PMID: 16642827.
      View in: PubMed   Mentions: 1     Fields:    
    112. Fiber bundle estimation and parameterization. Med Image Comput Comput Assist Interv. 2006; 9(Pt 2):252-9. Niethammer M, Bouix S, Westin CF, Shenton ME. PMID: 17354779; PMCID: PMC2773691.
      View in: PubMed   Mentions: 2     Fields:    Translation:Cells
    113. On diffusion tensor estimation. Conf Proc IEEE Eng Med Biol Soc. 2006; 2006:2622-5. Niethammer M, San Jose Estepar R, Bouix S, Shenton M, Westin CF. PMID: 17946125; PMCID: PMC2791793.
      View in: PubMed   Mentions: 9     Fields:    Translation:Humans
    114. Dynamic Active Contours for Visual Tracking. IEEE Trans Automat Contr. 2006; 51(4):562-579. Niethammer M, Tannenbaum A, Angenent S. PMID: 23729836; PMCID: PMC3666594.
      View in: PubMed   Mentions: 5  
    115. On diffusion tensor estimation. Conf Proc IEEE Eng Med Biol Soc. 2006; Suppl:6707-10. Niethammer M, Estepar RS, Bouix S, Shenton M, Westin CF. PMID: 17959492.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    116. On the Evolution of Vector Distance Functions of Closed Curves. Int J Comput Vis. 2005 Nov; 65(1-2):5-27. Niethammer M, Vela PA, Tannenbaum A. PMID: 23700357; PMCID: PMC3659211.
      View in: PubMed   Mentions:
    117. Area-Based Medial Axis of Planar Curves. Int J Comput Vis. 2004 Dec; 60(3):203-224. Niethammer M, Betelu S, Sapiro G, Tannenbaum A, Giblin PJ. PMID: 23710110; PMCID: PMC3663081.
      View in: PubMed   Mentions: 2  
    118. Localization of notches with Lamb waves. J Acoust Soc Am. 2003 Aug; 114(2):677-85. Benz R, Niethammer M, Hurlebaus S, Jacobs LJ. PMID: 12942951.
      View in: PubMed   Mentions: 1     Fields:    
    119. Multi-slice CT for visualization of pulmonary embolism using perfusion weighted color maps. Rofo. 2001 Apr; 173(4):289-94. Wildberger JE, Niethammer MU, Klotz E, Schaller S, Wein BB, Günther RW. PMID: 11367835.
      View in: PubMed   Mentions: 8     Fields:    Translation:Humans
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