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The ACROBAT 2022 challenge: Automatic registration of breast cancer tissue. Med Image Anal. 2024 Oct; 97:103257.
Weitz P, Valkonen M, Solorzano L, Carr C, Kartasalo K, Boissin C, Koivukoski S, Kuusela A, Rasic D, Feng Y, Pouplier SS, Sharma A, Eriksson KL, Robertson S, Marzahl C, Gatenbee CD, Anderson ARA, Wodzinski M, Jurgas A, Marini N, Atzori M, Müller H, Budelmann D, Weiss N, Heldmann S, Lotz J, Wolterink JM, De Santi B, Patil A, Sethi A, Kondo S, Kasai S, Hirasawa K, Farrokh M, Kumar N, Greiner R, Latonen L, Laenkholm AV, Hartman J, Ruusuvuori P, Rantalainen M. PMID: 38981282.
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PubMed Mentions:
8 Fields:
Translation:
Humans
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Ensemble-based deep learning improves detection of invasive breast cancer in routine histopathology images. Heliyon. 2024 Jun 30; 10(12):e32892.
Solorzano L, Robertson S, Acs B, Hartman J, Rantalainen M. PMID: 39022088; PMCID: PMC11252882.
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PubMed Mentions:
1
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A Multi-Stain Breast Cancer Histological Whole-Slide-Image Data Set from Routine Diagnostics. Sci Data. 2023 08 24; 10(1):562.
Weitz P, Valkonen M, Solorzano L, Carr C, Kartasalo K, Boissin C, Koivukoski S, Kuusela A, Rasic D, Feng Y, Sinius Pouplier S, Sharma A, Ledesma Eriksson K, Latonen L, Laenkholm AV, Hartman J, Ruusuvuori P, Rantalainen M. PMID: 37620357; PMCID: PMC10449765.
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PubMed Mentions:
7 Fields:
Translation:
Humans
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TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data. Heliyon. 2023 May; 9(5):e15306.
Pielawski N, Andersson A, Avenel C, Behanova A, Chelebian E, Klemm A, Nysjö F, Solorzano L, Wählby C. PMID: 37131430; PMCID: PMC10149187.
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PubMed Mentions:
18
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Comparison of East-Asia and West-Europe cohorts explains disparities in survival outcomes and highlights predictive biomarkers of early gastric cancer aggressiveness. Int J Cancer. 2022 03 01; 150(5):868-880.
Pereira C, Park JH, Campelos S, Gullo I, Lemos C, Solorzano L, Martins D, Gonçalves G, Leitão D, Lee HJ, Kong SH, André A, Borges C, Almeida D, Wälbhy C, Almeida R, Kim WH, Carneiro F, Yang HK, Almeida GM, Oliveira C. PMID: 34751446.
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PubMed Mentions:
10 Fields:
Translation:
Humans
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Machine learning for cell classification and neighborhood analysis in glioma tissue. Cytometry A. 2021 12; 99(12):1176-1186.
Solorzano L, Wik L, Olsson Bontell T, Wang Y, Klemm AH, Öfverstedt J, Jakola AS, Östman A, Wählby C. PMID: 34089228.
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PubMed Mentions:
8 Fields:
Translation:
Humans
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Towards Automatic Protein Co-Expression Quantification in Immunohistochemical TMA Slides. IEEE J Biomed Health Inform. 2021 02; 25(2):393-402.
Solorzano L, Pereira C, Martins D, Almeida R, Carneiro F, Almeida GM, Oliveira C, Wahlby C. PMID: 32750958.
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PubMed Mentions:
2 Fields:
Translation:
Humans
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Automated identification of the mouse brain's spatial compartments from in situ sequencing data. BMC Biol. 2020 10 19; 18(1):144.
Partel G, Hilscher MM, Milli G, Solorzano L, Klemm AH, Nilsson M, Wählby C. PMID: 33076915; PMCID: PMC7574211.
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PubMed Mentions:
17 Fields:
Translation:
AnimalsCells
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TissUUmaps: interactive visualization of large-scale spatial gene expression and tissue morphology data. Bioinformatics. 2020 08 01; 36(15):4363-4365.
Solorzano L, Partel G, Wählby C. PMID: 32449759; PMCID: PMC7520034.
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PubMed Mentions:
16 Fields:
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Artificial intelligence for diagnosis and grading of prostate cancer in biopsies: a population-based, diagnostic study. Lancet Oncol. 2020 02; 21(2):222-232.
Ström P, Kartasalo K, Olsson H, Solorzano L, Delahunt B, Berney DM, Bostwick DG, Evans AJ, Grignon DJ, Humphrey PA, Iczkowski KA, Kench JG, Kristiansen G, van der Kwast TH, Leite KRM, McKenney JK, Oxley J, Pan CC, Samaratunga H, Srigley JR, Takahashi H, Tsuzuki T, Varma M, Zhou M, Lindberg J, Lindskog C, Ruusuvuori P, Wählby C, Grönberg H, Rantalainen M, Egevad L, Eklund M. PMID: 31926806.
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PubMed Mentions:
227 Fields:
Translation:
Humans
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Deep Learning in Image Cytometry: A Review. Cytometry A. 2019 04; 95(4):366-380.
Gupta A, Harrison PJ, Wieslander H, Pielawski N, Kartasalo K, Partel G, Solorzano L, Suveer A, Klemm AH, Spjuth O, Sintorn IM, Wählby C. PMID: 30565841; PMCID: PMC6590257.
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PubMed Mentions:
58 Fields:
Translation:
HumansAnimals