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Kumari Sonal Choudhary

Title(s)Postdoctoral Scholar, Bioengineering
SchoolVc-academic Affairs
Address9500 Gilman Drive #
La Jolla CA 92093
ORCID ORCID Icon0000-0001-9527-7958 Additional info
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    International Center of Genetic Engineering and Biotechnology (ICGEB), Trieste, ItalyPhD2014Bioinformatics

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. Metabolic and genetic basis for auxotrophies in Gram-negative species. Proc Natl Acad Sci U S A. 2020 03 17; 117(11):6264-6273. Seif Y, Choudhary KS, Hefner Y, Anand A, Yang L, Palsson BO. PMID: 32132208.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    2. The Escherichia coli transcriptome mostly consists of independently regulated modules. Nat Commun. 2019 12 04; 10(1):5536. Sastry AV, Gao Y, Szubin R, Hefner Y, Xu S, Kim D, Choudhary KS, Yang L, King ZA, Palsson BO. PMID: 31797920.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    3. Pseudogene repair driven by selection pressure applied in experimental evolution. Nat Microbiol. 2019 03; 4(3):386-389. Anand A, Olson CA, Yang L, Sastry AV, Catoiu E, Choudhary KS, Phaneuf PV, Sandberg TE, Xu S, Hefner Y, Szubin R, Feist AM, Palsson BO. PMID: 30692668.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    4. The Staphylococcus aureus Two-Component System AgrAC Displays Four Distinct Genomic Arrangements That Delineate Genomic Virulence Factor Signatures. Front Microbiol. 2018; 9:1082. Choudhary KS, Mih N, Monk J, Kavvas E, Yurkovich JT, Sakoulas G, Palsson BO. PMID: 29887846.
      View in: PubMed   Mentions:
    5. Metabolic re-wiring of isogenic breast epithelial cell lines following epithelial to mesenchymal transition. Cancer Lett. 2017 06 28; 396:117-129. Halldorsson S, Rohatgi N, Magnusdottir M, Choudhary KS, Gudjonsson T, Knutsen E, Barkovskaya A, Hilmarsdottir B, Perander M, Mælandsmo GM, Gudmundsson S, Rolfsson Ó. PMID: 28323032.
      View in: PubMed   Mentions: 8     Fields:    Translation:HumansCells
    6. EGFR Signal-Network Reconstruction Demonstrates Metabolic Crosstalk in EMT. PLoS Comput Biol. 2016 06; 12(6):e1004924. Choudhary KS, Rohatgi N, Halldorsson S, Briem E, Gudjonsson T, Gudmundsson S, Rolfsson O. PMID: 27253373.
      View in: PubMed   Mentions: 9     Fields:    Translation:HumansCells
    7. Census of solo LuxR genes in prokaryotic genomes. Front Cell Infect Microbiol. 2015; 5:20. Hudaiberdiev S, Choudhary KS, Vera Alvarez R, Gelencsér Z, Ligeti B, Lamba D, Pongor S. PMID: 25815274.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
    8. ComQXPA quorum sensing systems may not be unique to Bacillus subtilis: a census in prokaryotic genomes. PLoS One. 2014; 9(5):e96122. Dogsa I, Choudhary KS, Marsetic Z, Hudaiberdiev S, Vera R, Pongor S, Mandic-Mulec I. PMID: 24788106.
      View in: PubMed   Mentions: 7     Fields:    Translation:Cells
    9. The organization of the quorum sensing luxI/R family genes in Burkholderia. Int J Mol Sci. 2013 Jul 02; 14(7):13727-47. Choudhary KS, Hudaiberdiev S, Gelencsér Z, Gonçalves Coutinho B, Venturi V, Pongor S. PMID: 23820583.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansAnimalsCells
    10. Crowd sourcing a new paradigm for interactome driven drug target identification in Mycobacterium tuberculosis. PLoS One. 2012; 7(7):e39808. Vashisht R, Mondal AK, Jain A, Shah A, Vishnoi P, Priyadarshini P, Bhattacharyya K, Rohira H, Bhat AG, Passi A, Mukherjee K, Choudhary KS, Kumar V, Arora A, Munusamy P, Subramanian A, Venkatachalam A, Gayathri S, Raj S, Chitra V, Verma K, Zaheer S, Balaganesh J, Gurusamy M, Razeeth M, Raja I, Thandapani M, Mevada V, Soni R, Rana S, Ramanna GM, Raghavan S, Subramanya SN, Kholia T, Patel R, Bhavnani V, Chiranjeevi L, Sengupta S, Singh PK, Atray N, Gandhi S, Avasthi TS, Nisthar S, Anurag M, Sharma P, Hasija Y, Dash D, Sharma A, Scaria V, Thomas Z, Chandra N, Brahmachari SK, Bhardwaj A. PMID: 22808064.
      View in: PubMed   Mentions: 12     Fields:    Translation:HumansCells
    11. Classifying the topology of AHL-driven quorum sensing circuits in proteobacterial genomes. Sensors (Basel). 2012; 12(5):5432-44. Gelencsér Z, Choudhary KS, Coutinho BG, Hudaiberdiev S, Galbáts B, Venturi V, Pongor S. PMID: 22778593.
      View in: PubMed   Mentions: 16     Fields:    Translation:Cells
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