Kai Zhang

Title(s)Postdoctoral Scholar, Cellular and Molecular Medicine
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
ORCID ORCID Icon0000-0003-3454-7357 Additional info
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    University of California San Diego, San Deigo, CaliforniaPh.D.08/2018Bioinformatics and Systems Biology

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. A single-cell atlas of chromatin accessibility in the human genome. Cell. 2021 Nov 24; 184(24):5985-6001.e19. Zhang K, Hocker JD, Miller M, Hou X, Chiou J, Poirion OB, Qiu Y, Li YE, Gaulton KJ, Wang A, Preissl S, Ren B. PMID: 34774128.
      View in: PubMed   Mentions:
    2. An atlas of gene regulatory elements in adult mouse cerebrum. Nature. 2021 10; 598(7879):129-136. Li YE, Preissl S, Hou X, Zhang Z, Zhang K, Qiu Y, Poirion OB, Li B, Chiou J, Liu H, Pinto-Duarte A, Kubo N, Yang X, Fang R, Wang X, Han JY, Lucero J, Yan Y, Miller M, Kuan S, Gorkin D, Gaulton KJ, Shen Y, Nunn M, Mukamel EA, Behrens MM, Ecker JR, Ren B. PMID: 34616068; PMCID: PMC8494637.
      View in: PubMed   Mentions:    Fields:    
    3. Comprehensive analysis of single cell ATAC-seq data with SnapATAC. Nat Commun. 2021 02 26; 12(1):1337. Fang R, Preissl S, Li Y, Hou X, Lucero J, Wang X, Motamedi A, Shiau AK, Zhou X, Xie F, Mukamel EA, Zhang K, Zhang Y, Behrens MM, Ecker JR, Ren B. PMID: 33637727; PMCID: PMC7910485.
      View in: PubMed   Mentions: 16     Fields:    Translation:AnimalsCells
    4. Single-cell multiomic profiling of human lungs reveals cell-type-specific and age-dynamic control of SARS-CoV2 host genes. Elife. 2020 11 09; 9. Wang A, Chiou J, Poirion OB, Buchanan J, Valdez MJ, Verheyden JM, Hou X, Kudtarkar P, Narendra S, Newsome JM, Guo M, Faddah DA, Zhang K, Young RE, Barr J, Sajti E, Misra R, Huyck H, Rogers L, Poole C, Whitsett JA, Pryhuber G, Xu Y, Gaulton KJ, Preissl S, Sun X, NHLBI LungMap Consortium. PMID: 33164753; PMCID: PMC7688309.
      View in: PubMed   Mentions: 17     Fields:    Translation:HumansCellsPHPublic Health
    5. Motto: Representing Motifs in Consensus Sequences with Minimum Information Loss. Genetics. 2020 10; 216(2):353-358. Wang M, Wang D, Zhang K, Ngo V, Fan S, Wang W. PMID: 32816922; PMCID: PMC7536857.
      View in: PubMed   Mentions:
    6. Identification of DNA motifs that regulate DNA methylation. Nucleic Acids Res. 2019 07 26; 47(13):6753-6768. Wang M, Zhang K, Ngo V, Liu C, Fan S, Whitaker JW, Chen Y, Ai R, Chen Z, Wang J, Zheng L, Wang W. PMID: 31334813; PMCID: PMC6649826.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansCells
    7. Taiji: System-level identification of key transcription factors reveals transcriptional waves in mouse embryonic development. Sci Adv. 2019 03; 5(3):eaav3262. Zhang K, Wang M, Zhao Y, Wang W. PMID: 30944857; PMCID: PMC6436936.
      View in: PubMed   Mentions:
    8. Epigenomic analysis reveals DNA motifs regulating histone modifications in human and mouse. Proc Natl Acad Sci U S A. 2019 02 26; 116(9):3668-3677. Ngo V, Chen Z, Zhang K, Whitaker JW, Wang M, Wang W. PMID: 30755522; PMCID: PMC6397554.
      View in: PubMed   Mentions:
    9. Integrative analysis with expanded DNA methylation data reveals common key regulators and pathways in cancers. NPJ Genom Med. 2019; 4:2. Fan S, Tang J, Li N, Zhao Y, Ai R, Zhang K, Wang M, Du W, Wang W. PMID: 30729033; PMCID: PMC6358616.
      View in: PubMed   Mentions:
    10. Bayesian Networks Predict Neuronal Transdifferentiation. G3 (Bethesda). 2018 07 02; 8(7):2501-2511. Ainsworth RI, Ai R, Ding B, Li N, Zhang K, Wang W. PMID: 29848620; PMCID: PMC6027867.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    11. Runx3 programs CD8+ T cell residency in non-lymphoid tissues and tumours. Nature. 2017 12 14; 552(7684):253-257. Milner JJ, Toma C, Yu B, Zhang K, Omilusik K, Phan AT, Wang D, Getzler AJ, Nguyen T, Crotty S, Wang W, Pipkin ME, Goldrath AW. PMID: 29211713; PMCID: PMC5747964.
      View in: PubMed   Mentions: 146     Fields:    Translation:HumansAnimalsCells
    12. Epigenetic landscapes reveal transcription factors that regulate CD8+ T cell differentiation. Nat Immunol. 2017 05; 18(5):573-582. Yu B, Zhang K, Milner JJ, Toma C, Chen R, Scott-Browne JP, Pereira RM, Crotty S, Chang JT, Pipkin ME, Wang W, Goldrath AW. PMID: 28288100; PMCID: PMC5395420.
      View in: PubMed   Mentions: 61     Fields:    Translation:AnimalsCells
    13. Systematic identification of protein combinations mediating chromatin looping. Nat Commun. 2016 07 27; 7:12249. Zhang K, Li N, Ainsworth RI, Wang W. PMID: 27461729; PMCID: PMC4974460.
      View in: PubMed   Mentions: 10     Fields:    Translation:HumansCells
    14. Constructing 3D interaction maps from 1D epigenomes. Nat Commun. 2016 Mar 10; 7:10812. Zhu Y, Chen Z, Zhang K, Wang M, Medovoy D, Whitaker JW, Ding B, Li N, Zheng L, Wang W. PMID: 26960733; PMCID: PMC4792925.
      View in: PubMed   Mentions: 48     Fields:    Translation:HumansCells
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