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    Joanne Chory

    TitleAdjunct Professor
    SchoolUniversity of California, San Diego
    DepartmentCell and Developmental Biology
    Address9500 Gilman Drive #0932
    CA La Jolla 92093
    Phone858-453-4100
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      Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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      1. Conn A, Pedmale UV, Chory J, Navlakha S. High-Resolution Laser Scanning Reveals Plant Architectures that Reflect Universal Network Design Principles. Cell Syst. 2017 Jul 26; 5(1):53-62.e3. PMID: 28750198.
        View in: PubMed
      2. Vermeer JEM, van Wijk R, Goedhart J, Geldner N, Chory J, Gadella TWJ, Munnik T. In Vivo Imaging of Diacylglycerol at the Cytoplasmic Leaflet of Plant Membranes. Plant Cell Physiol. 2017 Jul 01; 58(7):1196-1207. PMID: 28158855.
        View in: PubMed
      3. Seluzicki A, Burko Y, Chory J. Dancing in the dark: darkness as a signal in plants. Plant Cell Environ. 2017 Jan 03. PMID: 28044340.
        View in: PubMed
      4. Hetzel J, Duttke SH, Benner C, Chory J. Nascent RNA sequencing reveals distinct features in plant transcription. Proc Natl Acad Sci U S A. 2016 Oct 25; 113(43):12316-12321. PMID: 27729530.
        View in: PubMed
      5. Procko C, Burko Y, Jaillais Y, Ljung K, Long JA, Chory J. Corrigendum: The epidermis coordinates auxin-induced stem growth in response to shade. Genes Dev. 2016 Sep 01; 30(17):2018. PMID: 27664239.
        View in: PubMed
      6. Procko C, Burko Y, Jaillais Y, Ljung K, Long JA, Chory J. The epidermis coordinates auxin-induced stem growth in response to shade. Genes Dev. 2016 Jul 01; 30(13):1529-41. PMID: 27401556; PMCID: PMC4949326 [Available on 01/01/17].
      7. Yazaki J, Galli M, Kim AY, Nito K, Aleman F, Chang KN, Carvunis AR, Quan R, Nguyen H, Song L, Alvarez JM, Huang SS, Chen H, Ramachandran N, Altmann S, Gutiérrez RA, Hill DE, Schroeder JI, Chory J, LaBaer J, Vidal M, Braun P, Ecker JR. Mapping transcription factor interactome networks using HaloTag protein arrays. Proc Natl Acad Sci U S A. 2016 Jul 19; 113(29):E4238-47. PMID: 27357687; PMCID: PMC4961138.
      8. Bjornson M, Dandekar AM, Chory J, Dehesh K. Brassinosteroid's multi-modular interaction with the general stress network customizes stimulus-specific responses in Arabidopsis. Plant Sci. 2016 Sep; 250:165-177. PMID: 27457993.
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      9. Zheng Z, Guo Y, Novák O, Chen W, Ljung K, Noel JP, Chory J. Local auxin metabolism regulates environment-induced hypocotyl elongation. Nat Plants. 2016 03 21; 2:16025. PMID: 27249562; PMCID: PMC4849989 [Available on 09/21/16].
      10. Pedmale UV, Huang SC, Zander M, Cole BJ, Hetzel J, Ljung K, Reis PAB, Sridevi P, Nito K, Nery JR, Ecker JR, Chory J. Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light. Cell. 2016 Jan 14; 164(1-2):233-245. PMID: 26724867; PMCID: PMC4721562 [Available on 01/14/17].
      11. Kaiserli E, Páldi K, O'Donnell L, Batalov O, Pedmale UV, Nusinow DA, Kay SA, Chory J. Integration of Light and Photoperiodic Signaling in Transcriptional Nuclear Foci. Dev Cell. 2015 Nov 09; 35(3):311-21. PMID: 26555051; PMCID: PMC4654455 [Available on 11/09/16].
      12. Woodson JD, Joens MS, Sinson AB, Gilkerson J, Salomé PA, Weigel D, Fitzpatrick JA, Chory J. Ubiquitin facilitates a quality-control pathway that removes damaged chloroplasts. Science. 2015 Oct 23; 350(6259):450-4. PMID: 26494759; PMCID: PMC4863637.
      13. Willige BC, Chory J. A current perspective on the role of AGCVIII kinases in PIN-mediated apical hook development. Front Plant Sci. 2015; 6:767. PMID: 26500658; PMCID: PMC4593951.
      14. Yu J, Qiu H, Liu X, Wang M, Gao Y, Chory J, Tao Y. Characterization of tub4(P287L) , a ß-tubulin mutant, revealed new aspects of microtubule regulation in shade. J Integr Plant Biol. 2015 Sep; 57(9):757-69. PMID: 25899068; PMCID: PMC4779058.
      15. Wudick MM, Li X, Valentini V, Geldner N, Chory J, Lin J, Maurel C, Luu DT. Subcellular Redistribution of Root Aquaporins Induced by Hydrogen Peroxide. Mol Plant. 2015 Jul; 8(7):1103-14. PMID: 25749111.
        View in: PubMed
      16. Zorzatto C, Machado JP, Lopes KV, Nascimento KJ, Pereira WA, Brustolini OJ, Reis PA, Calil IP, Deguchi M, Sachetto-Martins G, Gouveia BC, Loriato VA, Silva MA, Silva FF, Santos AA, Chory J, Fontes EP. NIK1-mediated translation suppression functions as a plant antiviral immunity mechanism. Nature. 2015 Apr 30; 520(7549):679-82. PMID: 25707794; PMCID: PMC4779052.
      17. Brustolini OJB, Machado JPB, Condori-Apfata JA, Coco D, Deguchi M, Loriato VAP, Pereira WA, Alfenas-Zerbini P, Zerbini FM, Inoue-Nagata AK, Santos AA, Chory J, Silva FF, Fontes EPB. Sustained NIK-mediated antiviral signalling confers broad-spectrum tolerance to begomoviruses in cultivated plants. Plant Biotechnol J. 2015 Dec; 13(9):1300-1311. PMID: 25688422; PMCID: PMC4857726 [Available on 12/01/16].
      18. Martins S, Dohmann EM, Cayrel A, Johnson A, Fischer W, Pojer F, Satiat-Jeunemaître B, Jaillais Y, Chory J, Geldner N, Vert G. Internalization and vacuolar targeting of the brassinosteroid hormone receptor BRI1 are regulated by ubiquitination. Nat Commun. 2015 Jan 21; 6:6151. PMID: 25608221; PMCID: PMC4713032.
      19. Chory J. Interview with Joanne Chory. Trends Biochem Sci. 2014 Oct; 39(10):435-6. PMID: 25220379.
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      20. Belkhadir Y, Yang L, Hetzel J, Dangl JL, Chory J. The growth-defense pivot: crisis management in plants mediated by LRR-RK surface receptors. Trends Biochem Sci. 2014 Oct; 39(10):447-56. PMID: 25089011; PMCID: PMC4177940.
      21. Krzymuski M, Cerdán PD, Zhu L, Vinh A, Chory J, Huq E, Casal JJ. Phytochrome A antagonizes PHYTOCHROME INTERACTING FACTOR 1 to prevent over-activation of photomorphogenesis. Mol Plant. 2014 Sep; 7(9):1415-28. PMID: 25009301.
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      22. Li L, Zhang Q, Pedmale UV, Nito K, Fu W, Lin L, Hazen SP, Chory J. PIL1 participates in a negative feedback loop that regulates its own gene expression in response to shade. Mol Plant. 2014 Oct; 7(10):1582-5. PMID: 24895419; PMCID: PMC4271063.
      23. Procko C, Crenshaw CM, Ljung K, Noel JP, Chory J. Cotyledon-Generated Auxin Is Required for Shade-Induced Hypocotyl Growth in Brassica rapa. Plant Physiol. 2014 Jul; 165(3):1285-1301. PMID: 24891610.
        View in: PubMed
      24. Zhong X, Du J, Hale CJ, Gallego-Bartolome J, Feng S, Vashisht AA, Chory J, Wohlschlegel JA, Patel DJ, Jacobsen SE. Molecular mechanism of action of plant DRM de novo DNA methyltransferases. Cell. 2014 May 22; 157(5):1050-60. PMID: 24855943; PMCID: PMC4123750.
      25. Fitz Gerald JN, Carlson AL, Smith E, Maloof JN, Weigel D, Chory J, Borevitz JO, Swanson RJ. New Arabidopsis advanced intercross recombinant inbred lines reveal female control of nonrandom mating. Plant Physiol. 2014 May; 165(1):175-85. PMID: 24623850; PMCID: PMC4012578.
      26. Zheng Z, Germain Ade S, Chory J. Unfolding the mysteries of strigolactone signaling. Mol Plant. 2014 Jun; 7(6):934-6. PMID: 24623790; PMCID: PMC4040469.
      27. Simon ML, Platre MP, Assil S, van Wijk R, Chen WY, Chory J, Dreux M, Munnik T, Jaillais Y. A multi-colour/multi-affinity marker set to visualize phosphoinositide dynamics in Arabidopsis. Plant J. 2014 Jan; 77(2):322-37. PMID: 24147788; PMCID: PMC3981938.
      28. Jung HS, Crisp PA, Estavillo GM, Cole B, Hong F, Mockler TC, Pogson BJ, Chory J. Subset of heat-shock transcription factors required for the early response of Arabidopsis to excess light. Proc Natl Acad Sci U S A. 2013 Aug 27; 110(35):14474-9. PMID: 23918368; PMCID: PMC3761602.
      29. Nito K, Wong CC, Yates JR, Chory J. Tyrosine phosphorylation regulates the activity of phytochrome photoreceptors. Cell Rep. 2013 Jun 27; 3(6):1970-9. PMID: 23746445; PMCID: PMC4023694.
      30. Zhong SH, Liu JZ, Jin H, Lin L, Li Q, Chen Y, Yuan YX, Wang ZY, Huang H, Qi YJ, Chen XY, Vaucheret H, Chory J, Li J, He ZH. Warm temperatures induce transgenerational epigenetic release of RNA silencing by inhibiting siRNA biogenesis in Arabidopsis. Proc Natl Acad Sci U S A. 2013 May 28; 110(22):9171-6. PMID: 23686579; PMCID: PMC3670308.
      31. Guo Y, Zheng Z, La Clair JJ, Chory J, Noel JP. Smoke-derived karrikin perception by the a/ß-hydrolase KAI2 from Arabidopsis. Proc Natl Acad Sci U S A. 2013 May 14; 110(20):8284-9. PMID: 23613584; PMCID: PMC3657771.
      32. Shani E, Weinstain R, Zhang Y, Castillejo C, Kaiserli E, Chory J, Tsien RY, Estelle M. Gibberellins accumulate in the elongating endodermal cells of Arabidopsis root. Proc Natl Acad Sci U S A. 2013 Mar 19; 110(12):4834-9. PMID: 23382232; PMCID: PMC3606980.
      33. Zheng Z, Guo Y, Novák O, Dai X, Zhao Y, Ljung K, Noel JP, Chory J. Coordination of auxin and ethylene biosynthesis by the aminotransferase VAS1. Nat Chem Biol. 2013 Apr; 9(4):244-6. PMID: 23377040; PMCID: PMC3948326.
      34. Woodson JD, Perez-Ruiz JM, Schmitz RJ, Ecker JR, Chory J. Sigma factor-mediated plastid retrograde signals control nuclear gene expression. Plant J. 2013 Jan; 73(1):1-13. PMID: 22950756; PMCID: PMC3605210.
      35. Iñigo S, Giraldez AN, Chory J, Cerdán PD. Proteasome-mediated turnover of Arabidopsis MED25 is coupled to the activation of FLOWERING LOCUS T transcription. Plant Physiol. 2012 Nov; 160(3):1662-73. PMID: 22992513; PMCID: PMC3490578.
      36. Woodson JD, Chory J. Organelle signaling: how stressed chloroplasts communicate with the nucleus. Curr Biol. 2012 Sep 11; 22(17):R690-2. PMID: 22974998; PMCID: PMC4854192.
      37. Gilkerson J, Perez-Ruiz JM, Chory J, Callis J. The plastid-localized pfkB-type carbohydrate kinases FRUCTOKINASE-LIKE 1 and 2 are essential for growth and development of Arabidopsis thaliana. BMC Plant Biol. 2012 Jul 08; 12:102. PMID: 22770232; PMCID: PMC3409070.
      38. Li L, Ljung K, Breton G, Schmitz RJ, Pruneda-Paz J, Cowing-Zitron C, Cole BJ, Ivans LJ, Pedmale UV, Jung HS, Ecker JR, Kay SA, Chory J. Linking photoreceptor excitation to changes in plant architecture. Genes Dev. 2012 Apr 15; 26(8):785-90. PMID: 22508725; PMCID: PMC3337452.
      39. Lu YJ, Schornack S, Spallek T, Geldner N, Chory J, Schellmann S, Schumacher K, Kamoun S, Robatzek S. Patterns of plant subcellular responses to successful oomycete infections reveal differences in host cell reprogramming and endocytic trafficking. Cell Microbiol. 2012 May; 14(5):682-97. PMID: 22233428; PMCID: PMC4854193.
      40. Cole BJ, Chory J. Image-based analysis of light-grown seedling hypocotyls in Arabidopsis. Methods Mol Biol. 2012; 918:1-7. PMID: 22893281.
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      41. Vert G, Chory J. Crosstalk in cellular signaling: background noise or the real thing? Dev Cell. 2011 Dec 13; 21(6):985-91. PMID: 22172668; PMCID: PMC3281494.
      42. Belkhadir Y, Jaillais Y, Epple P, Balsemão-Pires E, Dangl JL, Chory J. Brassinosteroids modulate the efficiency of plant immune responses to microbe-associated molecular patterns. Proc Natl Acad Sci U S A. 2012 Jan 03; 109(1):297-302. PMID: 22087001; PMCID: PMC3252953.
      43. Won C, Shen X, Mashiguchi K, Zheng Z, Dai X, Cheng Y, Kasahara H, Kamiya Y, Chory J, Zhao Y. Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF ARABIDOPSIS and YUCCAs in Arabidopsis. Proc Natl Acad Sci U S A. 2011 Nov 08; 108(45):18518-23. PMID: 22025721; PMCID: PMC3215067.
      44. Hothorn M, Dabi T, Chory J. Structural basis for cytokinin recognition by Arabidopsis thaliana histidine kinase 4. Nat Chem Biol. 2011 Oct 02; 7(11):766-8. PMID: 21964459; PMCID: PMC3197759.
      45. Cuyvers S, Dornez E, Abou Hachem M, Svensson B, Hothorn M, Chory J, Delcour JA, Courtin CM. Isothermal titration calorimetry and surface plasmon resonance allow quantifying substrate binding to different binding sites of Bacillus subtilis xylanase. Anal Biochem. 2012 Jan 01; 420(1):90-2. PMID: 21964501; PMCID: PMC4854199.
      46. Chen M, Chory J. Phytochrome signaling mechanisms and the control of plant development. Trends Cell Biol. 2011 Nov; 21(11):664-71. PMID: 21852137; PMCID: PMC3205231.
      47. Balsemão-Pires E, Jaillais Y, Olson BJ, Andrade LR, Umen JG, Chory J, Sachetto-Martins G. The Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism. BMC Plant Biol. 2011 Jun 20; 11:108. PMID: 21689410; PMCID: PMC3141639.
      48. Hothorn M, Belkhadir Y, Dreux M, Dabi T, Noel JP, Wilson IA, Chory J. Structural basis of steroid hormone perception by the receptor kinase BRI1. Nature. 2011 Jun 12; 474(7352):467-71. PMID: 21666665; PMCID: PMC3280218.
      49. Filichkin SA, Breton G, Priest HD, Dharmawardhana P, Jaiswal P, Fox SE, Michael TP, Chory J, Kay SA, Mockler TC. Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules. PLoS One. 2011; 6(6):e16907. PMID: 21694767; PMCID: PMC3111414.
      50. Keller MM, Jaillais Y, Pedmale UV, Moreno JE, Chory J, Ballaré CL. Cryptochrome 1 and phytochrome B control shade-avoidance responses in Arabidopsis via partially independent hormonal cascades. Plant J. 2011 Jul; 67(2):195-207. PMID: 21457375; PMCID: PMC3135679.
      51. Woodson JD, Perez-Ruiz JM, Chory J. Heme synthesis by plastid ferrochelatase I regulates nuclear gene expression in plants. Curr Biol. 2011 May 24; 21(10):897-903. PMID: 21565502; PMCID: PMC4886857.
      52. Wu G, Wang X, Li X, Kamiya Y, Otegui MS, Chory J. Methylation of a phosphatase specifies dephosphorylation and degradation of activated brassinosteroid receptors. Sci Signal. 2011 May 10; 4(172):ra29. PMID: 21558554; PMCID: PMC4854194.
      53. Jaillais Y, Belkhadir Y, Balsemão-Pires E, Dangl JL, Chory J. Extracellular leucine-rich repeats as a platform for receptor/coreceptor complex formation. Proc Natl Acad Sci U S A. 2011 May 17; 108(20):8503-7. PMID: 21464298; PMCID: PMC3100946.
      54. Cole B, Kay SA, Chory J. Automated analysis of hypocotyl growth dynamics during shade avoidance in Arabidopsis. Plant J. 2011 Mar; 65(6):991-1000. PMID: 21288269; PMCID: PMC3076959.
      55. Jaillais Y, Hothorn M, Belkhadir Y, Dabi T, Nimchuk ZL, Meyerowitz EM, Chory J. Tyrosine phosphorylation controls brassinosteroid receptor activation by triggering membrane release of its kinase inhibitor. Genes Dev. 2011 Feb 01; 25(3):232-7. PMID: 21289069; PMCID: PMC3034898.
      56. Hacham Y, Holland N, Butterfield C, Ubeda-Tomas S, Bennett MJ, Chory J, Savaldi-Goldstein S. Brassinosteroid perception in the epidermis controls root meristem size. Development. 2011 Mar; 138(5):839-48. PMID: 21270053; PMCID: PMC3035089.
      57. Skylar A, Sung F, Hong F, Chory J, Wu X. Metabolic sugar signal promotes Arabidopsis meristematic proliferation via G2. Dev Biol. 2011 Mar 01; 351(1):82-9. PMID: 21185286; PMCID: PMC3041830.
      58. Chen M, Galvão RM, Li M, Burger B, Bugea J, Bolado J, Chory J. Arabidopsis HEMERA/pTAC12 initiates photomorphogenesis by phytochromes. Cell. 2010 Jun 25; 141(7):1230-40. PMID: 20603003; PMCID: PMC2935685.
      59. Isono E, Katsiarimpa A, Müller IK, Anzenberger F, Stierhof YD, Geldner N, Chory J, Schwechheimer C. The deubiquitinating enzyme AMSH3 is required for intracellular trafficking and vacuole biogenesis in Arabidopsis thaliana. Plant Cell. 2010 Jun; 22(6):1826-37. PMID: 20543027; PMCID: PMC2910964.
      60. Todesco M, Balasubramanian S, Hu TT, Traw MB, Horton M, Epple P, Kuhns C, Sureshkumar S, Schwartz C, Lanz C, Laitinen RA, Huang Y, Chory J, Lipka V, Borevitz JO, Dangl JL, Bergelson J, Nordborg M, Weigel D. Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana. Nature. 2010 Jun 03; 465(7298):632-6. PMID: 20520716; PMCID: PMC3055268.
      61. Jaillais Y, Chory J. Unraveling the paradoxes of plant hormone signaling integration. Nat Struct Mol Biol. 2010 Jun; 17(6):642-5. PMID: 20520656; PMCID: PMC3166629.
      62. Atwell S, Huang YS, Vilhjálmsson BJ, Willems G, Horton M, Li Y, Meng D, Platt A, Tarone AM, Hu TT, Jiang R, Muliyati NW, Zhang X, Amer MA, Baxter I, Brachi B, Chory J, Dean C, Debieu M, de Meaux J, Ecker JR, Faure N, Kniskern JM, Jones JD, Michael T, Nemri A, Roux F, Salt DE, Tang C, Todesco M, Traw MB, Weigel D, Marjoram P, Borevitz JO, Bergelson J, Nordborg M. Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines. Nature. 2010 Jun 03; 465(7298):627-31. PMID: 20336072; PMCID: PMC3023908.
      63. Chory J. Light signal transduction: an infinite spectrum of possibilities. Plant J. 2010 Mar; 61(6):982-91. PMID: 20409272; PMCID: PMC3124631.
      64. Skylar A, Hong F, Chory J, Weigel D, Wu X. STIMPY mediates cytokinin signaling during shoot meristem establishment in Arabidopsis seedlings. Development. 2010 Feb; 137(4):541-9. PMID: 20110319; PMCID: PMC2827612.
      65. Jung HS, Chory J. Signaling between chloroplasts and the nucleus: can a systems biology approach bring clarity to a complex and highly regulated pathway? Plant Physiol. 2010 Feb; 152(2):453-9. PMID: 19933385; PMCID: PMC2815895.
      66. Ausin I, Mockler TC, Chory J, Jacobsen SE. IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana. Nat Struct Mol Biol. 2009 Dec; 16(12):1325-7. PMID: 19915591; PMCID: PMC2842998.
      67. Nishimura N, Sarkeshik A, Nito K, Park SY, Wang A, Carvalho PC, Lee S, Caddell DF, Cutler SR, Chory J, Yates JR, Schroeder JI. PYR/PYL/RCAR family members are major in-vivo ABI1 protein phosphatase 2C-interacting proteins in Arabidopsis. Plant J. 2010 Jan; 61(2):290-9. PMID: 19874541; PMCID: PMC2807913.
      68. Pinheiro H, Samalova M, Geldner N, Chory J, Martinez A, Moore I. Genetic evidence that the higher plant Rab-D1 and Rab-D2 GTPases exhibit distinct but overlapping interactions in the early secretory pathway. J Cell Sci. 2009 Oct 15; 122(Pt 20):3749-58. PMID: 19789181; PMCID: PMC2758805.
      69. Vert G, Chory J. A toggle switch in plant nitrate uptake. Cell. 2009 Sep 18; 138(6):1064-6. PMID: 19766561.
        View in: PubMed
      70. Schwartz C, Balasubramanian S, Warthmann N, Michael TP, Lempe J, Sureshkumar S, Kobayashi Y, Maloof JN, Borevitz JO, Chory J, Weigel D. Cis-regulatory changes at FLOWERING LOCUS T mediate natural variation in flowering responses of Arabidopsis thaliana. Genetics. 2009 Oct; 183(2):723-32, 1SI-7SI. PMID: 19652183; PMCID: PMC2766330.
      71. Ibañes M, Fàbregas N, Chory J, Caño-Delgado AI. Brassinosteroid signaling and auxin transport are required to establish the periodic pattern of Arabidopsis shoot vascular bundles. Proc Natl Acad Sci U S A. 2009 Aug 11; 106(32):13630-5. PMID: 19666540; PMCID: PMC2717112.
      72. Adhikari ND, Orler R, Chory J, Froehlich JE, Larkin RM. Porphyrins promote the association of GENOMES UNCOUPLED 4 and a Mg-chelatase subunit with chloroplast membranes. J Biol Chem. 2009 Sep 11; 284(37):24783-96. PMID: 19605356; PMCID: PMC2757182.
      73. De Rybel B, Audenaert D, Vert G, Rozhon W, Mayerhofer J, Peelman F, Coutuer S, Denayer T, Jansen L, Nguyen L, Vanhoutte I, Beemster GT, Vleminckx K, Jonak C, Chory J, Inzé D, Russinova E, Beeckman T. Chemical inhibition of a subset of Arabidopsis thaliana GSK3-like kinases activates brassinosteroid signaling. Chem Biol. 2009 Jun 26; 16(6):594-604. PMID: 19549598; PMCID: PMC4854203.
      74. Sellaro R, Hoecker U, Yanovsky M, Chory J, Casal JJ. Synergism of red and blue light in the control of Arabidopsis gene expression and development. Curr Biol. 2009 Jul 28; 19(14):1216-20. PMID: 19559617; PMCID: PMC2730174.
      75. Liljegren SJ, Leslie ME, Darnielle L, Lewis MW, Taylor SM, Luo R, Geldner N, Chory J, Randazzo PA, Yanofsky MF, Ecker JR. Regulation of membrane trafficking and organ separation by the NEVERSHED ARF-GAP protein. Development. 2009 Jun; 136(11):1909-18. PMID: 19429787; PMCID: PMC2680113.
      76. Pan Y, Michael TP, Hudson ME, Kay SA, Chory J, Schuler MA. Cytochrome P450 monooxygenases as reporters for circadian-regulated pathways. Plant Physiol. 2009 Jun; 150(2):858-78. PMID: 19386812; PMCID: PMC2689971.
      77. Moreno JE, Tao Y, Chory J, Ballaré CL. Ecological modulation of plant defense via phytochrome control of jasmonate sensitivity. Proc Natl Acad Sci U S A. 2009 Mar 24; 106(12):4935-40. PMID: 19251652; PMCID: PMC2660767.
      78. Geldner N, Dénervaud-Tendon V, Hyman DL, Mayer U, Stierhof YD, Chory J. Rapid, combinatorial analysis of membrane compartments in intact plants with a multicolor marker set. Plant J. 2009 Jul; 59(1):169-78. PMID: 19309456; PMCID: PMC4854200.
      79. Balasubramanian S, Schwartz C, Singh A, Warthmann N, Kim MC, Maloof JN, Loudet O, Trainer GT, Dabi T, Borevitz JO, Chory J, Weigel D. QTL mapping in new Arabidopsis thaliana advanced intercross-recombinant inbred lines. PLoS One. 2009; 4(2):e4318. PMID: 19183806; PMCID: PMC2629843.
      80. Li L, Yu X, Thompson A, Guo M, Yoshida S, Asami T, Chory J, Yin Y. Arabidopsis MYB30 is a direct target of BES1 and cooperates with BES1 to regulate brassinosteroid-induced gene expression. Plant J. 2009 Apr; 58(2):275-86. PMID: 19170933; PMCID: PMC2814797.
      81. Loudet O, Michael TP, Burger BT, Le Metté C, Mockler TC, Weigel D, Chory J. A zinc knuckle protein that negatively controls morning-specific growth in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2008 Nov 04; 105(44):17193-8. PMID: 18971337; PMCID: PMC2579400.
      82. Dhonukshe P, Tanaka H, Goh T, Ebine K, Mähönen AP, Prasad K, Blilou I, Geldner N, Xu J, Uemura T, Chory J, Ueda T, Nakano A, Scheres B, Friml J. Generation of cell polarity in plants links endocytosis, auxin distribution and cell fate decisions. Nature. 2008 Dec 18; 456(7224):962-6. PMID: 18953331; PMCID: PMC2692841.
      83. Savaldi-Goldstein S, Baiga TJ, Pojer F, Dabi T, Butterfield C, Parry G, Santner A, Dharmasiri N, Tao Y, Estelle M, Noel JP, Chory J. New auxin analogs with growth-promoting effects in intact plants reveal a chemical strategy to improve hormone delivery. Proc Natl Acad Sci U S A. 2008 Sep 30; 105(39):15190-5. PMID: 18818305; PMCID: PMC2567513.
      84. Michael TP, Breton G, Hazen SP, Priest H, Mockler TC, Kay SA, Chory J. A morning-specific phytohormone gene expression program underlying rhythmic plant growth. PLoS Biol. 2008 Sep 16; 6(9):e225. PMID: 18798691; PMCID: PMC2535664.
      85. Leung DW, Otomo C, Chory J, Rosen MK. Genetically encoded photoswitching of actin assembly through the Cdc42-WASP-Arp2/3 complex pathway. Proc Natl Acad Sci U S A. 2008 Sep 02; 105(35):12797-802. PMID: 18728185; PMCID: PMC2525560.
      86. Vert G, Walcher CL, Chory J, Nemhauser JL. Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2. Proc Natl Acad Sci U S A. 2008 Jul 15; 105(28):9829-34. PMID: 18599455; PMCID: PMC2474533.
      87. Jones AM, Chory J, Dangl JL, Estelle M, Jacobsen SE, Meyerowitz EM, Nordborg M, Weigel D. The impact of Arabidopsis on human health: diversifying our portfolio. Cell. 2008 Jun 13; 133(6):939-43. PMID: 18555767; PMCID: PMC3124625.
      88. Yu X, Li L, Li L, Guo M, Chory J, Yin Y. Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis. Proc Natl Acad Sci U S A. 2008 May 27; 105(21):7618-23. PMID: 18467490; PMCID: PMC2396691.
      89. Woodson JD, Chory J. Coordination of gene expression between organellar and nuclear genomes. Nat Rev Genet. 2008 May; 9(5):383-95. PMID: 18368053; PMCID: PMC4854206.
      90. Tao Y, Ferrer JL, Ljung K, Pojer F, Hong F, Long JA, Li L, Moreno JE, Bowman ME, Ivans LJ, Cheng Y, Lim J, Zhao Y, Ballaré CL, Sandberg G, Noel JP, Chory J. Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants. Cell. 2008 Apr 04; 133(1):164-76. PMID: 18394996; PMCID: PMC2442466.
      91. Filiault DL, Wessinger CA, Dinneny JR, Lutes J, Borevitz JO, Weigel D, Chory J, Maloof JN. Amino acid polymorphisms in Arabidopsis phytochrome B cause differential responses to light. Proc Natl Acad Sci U S A. 2008 Feb 26; 105(8):3157-62. PMID: 18287016; PMCID: PMC2268601.
      92. Michael TP, Mockler TC, Breton G, McEntee C, Byer A, Trout JD, Hazen SP, Shen R, Priest HD, Sullivan CM, Givan SA, Yanovsky M, Hong F, Kay SA, Chory J. Network discovery pipeline elucidates conserved time-of-day-specific cis-regulatory modules. PLoS Genet. 2008 Feb; 4(2):e14. PMID: 18248097; PMCID: PMC2222925.
      93. Savaldi-Goldstein S, Chory J. Growth coordination and the shoot epidermis. Curr Opin Plant Biol. 2008 Feb; 11(1):42-8. PMID: 18065257; PMCID: PMC2274781.
      94. Breuer C, Stacey NJ, West CE, Zhao Y, Chory J, Tsukaya H, Azumi Y, Maxwell A, Roberts K, Sugimoto-Shirasu K. BIN4, a novel component of the plant DNA topoisomerase VI complex, is required for endoreduplication in Arabidopsis. Plant Cell. 2007 Nov; 19(11):3655-68. PMID: 18055605; PMCID: PMC2174874.
      95. Panikashvili D, Savaldi-Goldstein S, Mandel T, Yifhar T, Franke RB, Höfer R, Schreiber L, Chory J, Aharoni A. The Arabidopsis DESPERADO/AtWBC11 transporter is required for cutin and wax secretion. Plant Physiol. 2007 Dec; 145(4):1345-60. PMID: 17951461; PMCID: PMC2151707.
      96. Michael TP, Park S, Kim TS, Booth J, Byer A, Sun Q, Chory J, Lee K. Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circadian clock. PLoS One. 2007 Aug 29; 2(8):e795. PMID: 17726525; PMCID: PMC1949147.
      97. Wu X, Chory J, Weigel D. Combinations of WOX activities regulate tissue proliferation during Arabidopsis embryonic development. Dev Biol. 2007 Sep 15; 309(2):306-16. PMID: 17706632; PMCID: PMC2692342.
      98. Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR. Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana. Proc Natl Acad Sci U S A. 2007 Jul 17; 104(29):12057-62. PMID: 17626786; PMCID: PMC1914337.
      99. Geldner N, Hyman DL, Wang X, Schumacher K, Chory J. Endosomal signaling of plant steroid receptor kinase BRI1. Genes Dev. 2007 Jul 01; 21(13):1598-602. PMID: 17578906; PMCID: PMC1899468.
      100. Holton N, Caño-Delgado A, Harrison K, Montoya T, Chory J, Bishop GJ. Tomato BRASSINOSTEROID INSENSITIVE1 is required for systemin-induced root elongation in Solanum pimpinellifolium but is not essential for wound signaling. Plant Cell. 2007 May; 19(5):1709-17. PMID: 17513502; PMCID: PMC1913732.
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      109. Nemhauser JL, Hong F, Chory J. Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses. Cell. 2006 Aug 11; 126(3):467-75. PMID: 16901781.
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      111. Balasubramanian S, Sureshkumar S, Agrawal M, Michael TP, Wessinger C, Maloof JN, Clark R, Warthmann N, Chory J, Weigel D. The PHYTOCHROME C photoreceptor gene mediates natural variation in flowering and growth responses of Arabidopsis thaliana. Nat Genet. 2006 Jun; 38(6):711-5. PMID: 16732287; PMCID: PMC1592229.
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      114. Yin Y, Chory J, Baulcombe D. RNAi in transgenic plants. Curr Protoc Mol Biol. 2005 Nov; Chapter 26:Unit 26.6. PMID: 18265365.
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      115. Verdecia MA, Larkin RM, Ferrer JL, Riek R, Chory J, Noel JP. [Structure of the Mg-chelatase cofactor GUN4 reveals a novel hand-shaped fold for porphyrin binding]. Med Sci (Paris). 2005 Nov; 21(11):903-4. PMID: 16274634.
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      116. Fan J, Quan S, Orth T, Awai C, Chory J, Hu J. The Arabidopsis PEX12 gene is required for peroxisome biogenesis and is essential for development. Plant Physiol. 2005 Sep; 139(1):231-9. PMID: 16113209; PMCID: PMC1203373.
      117. Mazzella MA, Arana MV, Staneloni RJ, Perelman S, Rodriguez Batiller MJ, Muschietti J, Cerdán PD, Chen K, Sánchez RA, Zhu T, Chory J, Casal JJ. Phytochrome control of the Arabidopsis transcriptome anticipates seedling exposure to light. Plant Cell. 2005 Sep; 17(9):2507-16. PMID: 16024587; PMCID: PMC1197430.
      118. Nemhauser JL, Chory J. A new FronTIR in targeted protein degradation and plant development. Cell. 2005 Jul 01; 121(7):970-2. PMID: 15989947.
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      119. Wang X, Li X, Meisenhelder J, Hunter T, Yoshida S, Asami T, Chory J. Autoregulation and homodimerization are involved in the activation of the plant steroid receptor BRI1. Dev Cell. 2005 Jun; 8(6):855-65. PMID: 15935775.
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      120. Werner JD, Borevitz JO, Uhlenhaut NH, Ecker JR, Chory J, Weigel D. FRIGIDA-independent variation in flowering time of natural Arabidopsis thaliana accessions. Genetics. 2005 Jul; 170(3):1197-207. PMID: 15911588; PMCID: PMC1451178.
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      122. Chen M, Tao Y, Lim J, Shaw A, Chory J. Regulation of phytochrome B nuclear localization through light-dependent unmasking of nuclear-localization signals. Curr Biol. 2005 Apr 12; 15(7):637-42. PMID: 15823535.
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      123. Werner JD, Borevitz JO, Warthmann N, Trainer GT, Ecker JR, Chory J, Weigel D. Quantitative trait locus mapping and DNA array hybridization identify an FLM deletion as a cause for natural flowering-time variation. Proc Natl Acad Sci U S A. 2005 Feb 15; 102(7):2460-5. PMID: 15695584; PMCID: PMC548991.
      124. Yin Y, Vafeados D, Tao Y, Yoshida S, Asami T, Chory J. A new class of transcription factors mediates brassinosteroid-regulated gene expression in Arabidopsis. Cell. 2005 Jan 28; 120(2):249-59. PMID: 15680330.
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      125. Kinoshita T, Caño-Delgado A, Seto H, Hiranuma S, Fujioka S, Yoshida S, Chory J. Binding of brassinosteroids to the extracellular domain of plant receptor kinase BRI1. Nature. 2005 Jan 13; 433(7022):167-71. PMID: 15650741.
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      126. Vert G, Nemhauser JL, Geldner N, Hong F, Chory J. Molecular mechanisms of steroid hormone signaling in plants. Annu Rev Cell Dev Biol. 2005; 21:177-201. PMID: 16212492.
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      127. Russinova E, Borst JW, Kwaaitaal M, Caño-Delgado A, Yin Y, Chory J, de Vries SC. Heterodimerization and endocytosis of Arabidopsis brassinosteroid receptors BRI1 and AtSERK3 (BAK1). Plant Cell. 2004 Dec; 16(12):3216-29. PMID: 15548744; PMCID: PMC535869.
      128. Caño-Delgado A, Yin Y, Yu C, Vafeados D, Mora-García S, Cheng JC, Nam KH, Li J, Chory J. BRL1 and BRL3 are novel brassinosteroid receptors that function in vascular differentiation in Arabidopsis. Development. 2004 Nov; 131(21):5341-51. PMID: 15486337.
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      129. Fontes EP, Santos AA, Luz DF, Waclawovsky AJ, Chory J. The geminivirus nuclear shuttle protein is a virulence factor that suppresses transmembrane receptor kinase activity. Genes Dev. 2004 Oct 15; 18(20):2545-56. PMID: 15489295; PMCID: PMC529541.
      130. Nemhauser JL, Mockler TC, Chory J. Interdependency of brassinosteroid and auxin signaling in Arabidopsis. PLoS Biol. 2004 Sep; 2(9):E258. PMID: 15328536; PMCID: PMC509407.
      131. Mockler TC, Yu X, Shalitin D, Parikh D, Michael TP, Liou J, Huang J, Smith Z, Alonso JM, Ecker JR, Chory J, Lin C. Regulation of flowering time in Arabidopsis by K homology domain proteins. Proc Natl Acad Sci U S A. 2004 Aug 24; 101(34):12759-64. PMID: 15310842; PMCID: PMC515126.
      132. Wolyn DJ, Borevitz JO, Loudet O, Schwartz C, Maloof J, Ecker JR, Berry CC, Chory J. Light-response quantitative trait loci identified with composite interval and eXtreme array mapping in Arabidopsis thaliana. Genetics. 2004 Jun; 167(2):907-17. PMID: 15238539; PMCID: PMC1470895.
      133. Borevitz JO, Chory J. Genomics tools for QTL analysis and gene discovery. Curr Opin Plant Biol. 2004 Apr; 7(2):132-6. PMID: 15003212.
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      134. Mora-García S, Vert G, Yin Y, Caño-Delgado A, Cheong H, Chory J. Nuclear protein phosphatases with Kelch-repeat domains modulate the response to brassinosteroids in Arabidopsis. Genes Dev. 2004 Feb 15; 18(4):448-60. PMID: 14977918; PMCID: PMC359398.
      135. Chen M, Chory J, Fankhauser C. Light signal transduction in higher plants. Annu Rev Genet. 2004; 38:87-117. PMID: 15568973.
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      136. Nemhauser JL, Chory J. BRing it on: new insights into the mechanism of brassinosteroid action. J Exp Bot. 2004 Jan; 55(395):265-70. PMID: 14673032.
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      137. Lariguet P, Boccalandro HE, Alonso JM, Ecker JR, Chory J, Casal JJ, Fankhauser C. A growth regulatory loop that provides homeostasis to phytochrome a signaling. Plant Cell. 2003 Dec; 15(12):2966-78. PMID: 14615593; PMCID: PMC282841.
      138. Chen M, Schwab R, Chory J. Characterization of the requirements for localization of phytochrome B to nuclear bodies. Proc Natl Acad Sci U S A. 2003 Nov 25; 100(24):14493-8. PMID: 14612575; PMCID: PMC283619.
      139. Nomura T, Bishop GJ, Kaneta T, Reid JB, Chory J, Yokota T. The LKA gene is a BRASSINOSTEROID INSENSITIVE 1 homolog of pea. Plant J. 2003 Nov; 36(3):291-300. PMID: 14617087.
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      140. Maxwell BB, Andersson CR, Poole DS, Kay SA, Chory J. HY5, Circadian Clock-Associated 1, and a cis-element, DET1 dark response element, mediate DET1 regulation of chlorophyll a/b-binding protein 2 expression. Plant Physiol. 2003 Dec; 133(4):1565-77. PMID: 14563928; PMCID: PMC300714.
      141. Zhao Y, Dai X, Blackwell HE, Schreiber SL, Chory J. SIR1, an upstream component in auxin signaling identified by chemical genetics. Science. 2003 Aug 22; 301(5636):1107-10. PMID: 12893885.
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      142. Cerdán PD, Chory J. Regulation of flowering time by light quality. Nature. 2003 Jun 19; 423(6942):881-5. PMID: 12815435.
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      143. Nemhauser JL, Maloof JN, Chory J. Building integrated models of plant growth and development. Plant Physiol. 2003 Jun; 132(2):436-9. PMID: 12805576; PMCID: PMC166986.
      144. Borevitz JO, Liang D, Plouffe D, Chang HS, Zhu T, Weigel D, Berry CC, Winzeler E, Chory J. Large-scale identification of single-feature polymorphisms in complex genomes. Genome Res. 2003 Mar; 13(3):513-23. PMID: 12618383; PMCID: PMC430246.
      145. Larkin RM, Alonso JM, Ecker JR, Chory J. GUN4, a regulator of chlorophyll synthesis and intracellular signaling. Science. 2003 Feb 07; 299(5608):902-6. PMID: 12574634.
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      146. Staiger D, Allenbach L, Salathia N, Fiechter V, Davis SJ, Millar AJ, Chory J, Fankhauser C. The Arabidopsis SRR1 gene mediates phyB signaling and is required for normal circadian clock function. Genes Dev. 2003 Jan 15; 17(2):256-68. PMID: 12533513; PMCID: PMC195977.
      147. Strand A, Asami T, Alonso J, Ecker JR, Chory J. Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrinIX. Nature. 2003 Jan 02; 421(6918):79-83. PMID: 12511958.
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      148. Thummel CS, Chory J. Steroid signaling in plants and insects--common themes, different pathways. Genes Dev. 2002 Dec 15; 16(24):3113-29. PMID: 12502734.
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      149. Beachy R, Bennetzen JL, Chassy BM, Chrispeels M, Chory J, Ecker JR, Noel JP, Kay SA, Dean C, Lamb C, Jones J, Santerre CR, Schroeder JI, Umen J, Yanofsky M, Wessler S, Zhao Y, Parrott W. Divergent perspectives on GM food. Nat Biotechnol. 2002 Dec; 20(12):1195-6; author reply 1197. PMID: 12454665.
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      150. Zhao Y, Hull AK, Gupta NR, Goss KA, Alonso J, Ecker JR, Normanly J, Chory J, Celenza JL. Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3. Genes Dev. 2002 Dec 01; 16(23):3100-12. PMID: 12464638; PMCID: PMC187496.
      151. Friedrichsen DM, Nemhauser J, Muramitsu T, Maloof JN, Alonso J, Ecker JR, Furuya M, Chory J. Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth. Genetics. 2002 Nov; 162(3):1445-56. PMID: 12454087; PMCID: PMC1462317.
      152. Schroeder DF, Gahrtz M, Maxwell BB, Cook RK, Kan JM, Alonso JM, Ecker JR, Chory J. De-etiolated 1 and damaged DNA binding protein 1 interact to regulate Arabidopsis photomorphogenesis. Curr Biol. 2002 Sep 03; 12(17):1462-72. PMID: 12225661.
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      153. Nemhauser J, Chory J. Photomorphogenesis. Arabidopsis Book. 2002; 1:e0054. PMID: 22303211; PMCID: PMC3243328.
      154. Moore D, Dowhan D, Chory J, Ribaudo RK. Isolation and purification of large DNA restriction fragments from agarose gels. Curr Protoc Mol Biol. 2002 Aug; Chapter 2:Unit 2.6. PMID: 18265307.
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      155. Hu J, Aguirre M, Peto C, Alonso J, Ecker J, Chory J. A role for peroxisomes in photomorphogenesis and development of Arabidopsis. Science. 2002 Jul 19; 297(5580):405-9. PMID: 12130786.
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      156. Yin Y, Cheong H, Friedrichsen D, Zhao Y, Hu J, Mora-Garcia S, Chory J. A crucial role for the putative Arabidopsis topoisomerase VI in plant growth and development. Proc Natl Acad Sci U S A. 2002 Jul 23; 99(15):10191-6. PMID: 12119417; PMCID: PMC126646.
      157. Yin Y, Wu D, Chory J. Plant receptor kinases: systemin receptor identified. Proc Natl Acad Sci U S A. 2002 Jul 09; 99(14):9090-2. PMID: 12093928; PMCID: PMC123096.
      158. Yin Y, Wang ZY, Mora-Garcia S, Li J, Yoshida S, Asami T, Chory J. BES1 accumulates in the nucleus in response to brassinosteroids to regulate gene expression and promote stem elongation. Cell. 2002 Apr 19; 109(2):181-91. PMID: 12007405.
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      159. Wang ZY, Nakano T, Gendron J, He J, Chen M, Vafeados D, Yang Y, Fujioka S, Yoshida S, Asami T, Chory J. Nuclear-localized BZR1 mediates brassinosteroid-induced growth and feedback suppression of brassinosteroid biosynthesis. Dev Cell. 2002 Apr; 2(4):505-13. PMID: 11970900.
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      160. Borevitz JO, Maloof JN, Lutes J, Dabi T, Redfern JL, Trainer GT, Werner JD, Asami T, Berry CC, Weigel D, Chory J. Quantitative trait loci controlling light and hormone response in two accessions of Arabidopsis thaliana. Genetics. 2002 Feb; 160(2):683-96. PMID: 11861571; PMCID: PMC1461994.
      161. Nordborg M, Borevitz JO, Bergelson J, Berry CC, Chory J, Hagenblad J, Kreitman M, Maloof JN, Noyes T, Oefner PJ, Stahl EA, Weigel D. The extent of linkage disequilibrium in Arabidopsis thaliana. Nat Genet. 2002 Feb; 30(2):190-3. PMID: 11780140.
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      162. Surpin M, Larkin RM, Chory J. Signal transduction between the chloroplast and the nucleus. Plant Cell. 2002; 14 Suppl:S327-38. PMID: 12045286; PMCID: PMC151264.
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      164. Friedrichsen D, Chory J. Steroid signaling in plants: from the cell surface to the nucleus. Bioessays. 2001 Nov; 23(11):1028-36. PMID: 11746219.
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      165. Luan S, Kudla J, Harter K, Gruissem W, Chory J. Renaming genes and duplication of gene names in the literature. Plant Cell. 2001 Nov; 13(11):2391-2. PMID: 11701876; PMCID: PMC2652722.
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      167. Zhao Y, Chory J. A link between the light and gibberellin signaling cascades. Dev Cell. 2001 Sep; 1(3):315-6. PMID: 11702941.
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      168. Gil P, Dewey E, Friml J, Zhao Y, Snowden KC, Putterill J, Palme K, Estelle M, Chory J. BIG: a calossin-like protein required for polar auxin transport in Arabidopsis. Genes Dev. 2001 Aug 01; 15(15):1985-97. PMID: 11485992; PMCID: PMC312751.
      169. Liu XL, Covington MF, Fankhauser C, Chory J, Wagner DR. ELF3 encodes a circadian clock-regulated nuclear protein that functions in an Arabidopsis PHYB signal transduction pathway. Plant Cell. 2001 Jun; 13(6):1293-304. PMID: 11402161; PMCID: PMC135570.
      170. Chory J, Pollard JD. Separation of small DNA fragments by conventional gel electrophoresis. Curr Protoc Mol Biol. 2001 May; Chapter 2:Unit2.7. PMID: 18265187.
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      171. Ellington A, Chory J. Deprotection of oligonucleotides and purification using denaturing PAGE. Curr Protoc Immunol. 2001 May; Chapter 10:Unit 10.7. PMID: 18432699.
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      172. Moore D, Chory J, Ribaudo RK. Isolation and purification of large DNA restriction fragments from agarose gels. Curr Protoc Immunol. 2001 May; Chapter 10:Unit 10.5. PMID: 18432696.
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      173. Wang ZY, Seto H, Fujioka S, Yoshida S, Chory J. BRI1 is a critical component of a plasma-membrane receptor for plant steroids. Nature. 2001 Mar 15; 410(6826):380-3. PMID: 11268216.
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      174. Mochizuki N, Brusslan JA, Larkin R, Nagatani A, Chory J. Arabidopsis genomes uncoupled 5 (GUN5) mutant reveals the involvement of Mg-chelatase H subunit in plastid-to-nucleus signal transduction. Proc Natl Acad Sci U S A. 2001 Feb 13; 98(4):2053-8. PMID: 11172074; PMCID: PMC29380.
      175. Zhao Y, Christensen SK, Fankhauser C, Cashman JR, Cohen JD, Weigel D, Chory J. A role for flavin monooxygenase-like enzymes in auxin biosynthesis. Science. 2001 Jan 12; 291(5502):306-9. PMID: 11209081.
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      176. Chory J, Wu D. Weaving the complex web of signal transduction. Plant Physiol. 2001 Jan; 125(1):77-80. PMID: 11154301; PMCID: PMC1539330.
      177. Vinti G, Hills A, Campbell S, Bowyer JR, Mochizuki N, Chory J, López-Juez E. Interactions between hy1 and gun mutants of Arabidopsis, and their implications for plastid/nuclear signalling. Plant J. 2000 Dec; 24(6):883-94. PMID: 11135121.
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      178. Spiegelman JI, Mindrinos MN, Fankhauser C, Richards D, Lutes J, Chory J, Oefner PJ. Cloning of the Arabidopsis RSF1 gene by using a mapping strategy based on high-density DNA arrays and denaturing high-performance liquid chromatography. Plant Cell. 2000 Dec; 12(12):2485-2498. PMID: 11148292; PMCID: PMC102232.
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      180. McCarty DR, Chory J. Conservation and innovation in plant signaling pathways. Cell. 2000 Oct 13; 103(2):201-9. PMID: 11057894.
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      181. Allen GJ, Chu SP, Schumacher K, Shimazaki CT, Vafeados D, Kemper A, Hawke SD, Tallman G, Tsien RY, Harper JF, Chory J, Schroeder JI. Alteration of stimulus-specific guard cell calcium oscillations and stomatal closing in Arabidopsis det3 mutant. Science. 2000 Sep 29; 289(5488):2338-42. PMID: 11009417.
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      182. Genick UK, Chory J. Red light sensing in plants. Curr Biol. 2000 Sep 21; 10(18):R651-4. PMID: 10997949.
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      184. Friedrichsen DM, Joazeiro CA, Li J, Hunter T, Chory J. Brassinosteroid-insensitive-1 is a ubiquitously expressed leucine-rich repeat receptor serine/threonine kinase. Plant Physiol. 2000 Aug; 123(4):1247-56. PMID: 10938344; PMCID: PMC59084.
      185. Jarvis P, Dörmann P, Peto CA, Lutes J, Benning C, Chory J. Galactolipid deficiency and abnormal chloroplast development in the Arabidopsis MGD synthase 1 mutant. Proc Natl Acad Sci U S A. 2000 Jul 05; 97(14):8175-9. PMID: 10869420; PMCID: PMC16689.
      186. He Z, Wang ZY, Li J, Zhu Q, Lamb C, Ronald P, Chory J. Perception of brassinosteroids by the extracellular domain of the receptor kinase BRI1. Science. 2000 Jun 30; 288(5475):2360-3. PMID: 10875920.
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      187. Chory J, Ecker JR, Briggs S, Caboche M, Coruzzi GM, Cook D, Dangl J, Grant S, Guerinot ML, Henikoff S, Martienssen R, Okada K, Raikhel NV, Somerville CR, Weigel D. National Science Foundation-Sponsored Workshop Report: "The 2010 Project" functional genomics and the virtual plant. A blueprint for understanding how plants are built and how to improve them. Plant Physiol. 2000 Jun; 123(2):423-6. PMID: 10859172; PMCID: PMC1539254.
      188. Willows RD, Mayer SM, Foulk MS, DeLong A, Hanson K, Chory J, Beale SI. Phytobilin biosynthesis: the Synechocystis sp. PCC 6803 heme oxygenase-encoding ho1 gene complements a phytochrome-deficient Arabidopsis thalianna hy1 mutant. Plant Mol Biol. 2000 May; 43(1):113-20. PMID: 10949378.
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      189. Weigel D, Ahn JH, Blázquez MA, Borevitz JO, Christensen SK, Fankhauser C, Ferrándiz C, Kardailsky I, Malancharuvil EJ, Neff MM, Nguyen JT, Sato S, Wang ZY, Xia Y, Dixon RA, Harrison MJ, Lamb CJ, Yanofsky MF, Chory J. Activation tagging in Arabidopsis. Plant Physiol. 2000 Apr; 122(4):1003-13. PMID: 10759496; PMCID: PMC1539247.
      190. Christensen SK, Dagenais N, Chory J, Weigel D. Regulation of auxin response by the protein kinase PINOID. Cell. 2000 Feb 18; 100(4):469-78. PMID: 10693763.
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      191. Neff MM, Fankhauser C, Chory J. Light: an indicator of time and place. Genes Dev. 2000 Feb 01; 14(3):257-71. PMID: 10673498.
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      192. Schumacher K, Chory J. Brassinosteroid signal transduction: still casting the actors. Curr Opin Plant Biol. 2000 Feb; 3(1):79-84. PMID: 10679450.
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      193. Neff MM, Nguyen SM, Malancharuvil EJ, Fujioka S, Noguchi T, Seto H, Tsubuki M, Honda T, Takatsuto S, Yoshida S, Chory J. BAS1: A gene regulating brassinosteroid levels and light responsiveness in Arabidopsis. Proc Natl Acad Sci U S A. 1999 Dec 21; 96(26):15316-23. PMID: 10611382; PMCID: PMC24817.
      194. Schumacher K, Vafeados D, McCarthy M, Sze H, Wilkins T, Chory J. The Arabidopsis det3 mutant reveals a central role for the vacuolar H(+)-ATPase in plant growth and development. Genes Dev. 1999 Dec 15; 13(24):3259-70. PMID: 10617574; PMCID: PMC317205.
      195. Kardailsky I, Shukla VK, Ahn JH, Dagenais N, Christensen SK, Nguyen JT, Chory J, Harrison MJ, Weigel D. Activation tagging of the floral inducer FT. Science. 1999 Dec 03; 286(5446):1962-5. PMID: 10583961.
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      196. Streatfield SJ, Weber A, Kinsman EA, Häusler RE, Li J, Post-Beittenmiller D, Kaiser WM, Pyke KA, Flügge UI, Chory J. The phosphoenolpyruvate/phosphate translocator is required for phenolic metabolism, palisade cell development, and plastid-dependent nuclear gene expression. Plant Cell. 1999 Sep; 11(9):1609-22. PMID: 10488230; PMCID: PMC144315.
      197. Noguchi T, Fujioka S, Takatsuto S, Sakurai A, Yoshida S, Li J, Chory J. Arabidopsis det2 is defective in the conversion of (24R)-24-methylcholest-4-En-3-one to (24R)-24-methyl-5alpha-cholestan-3-one in brassinosteroid biosynthesis. Plant Physiol. 1999 Jul; 120(3):833-40. PMID: 10398719; PMCID: PMC59322.
      198. Fankhauser C, Yeh KC, Lagarias JC, Zhang H, Elich TD, Chory J. PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis. Science. 1999 May 28; 284(5419):1539-41. PMID: 10348744.
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      199. Fankhauser C, Chory J. Light receptor kinases in plants! Curr Biol. 1999 Feb 25; 9(4):R123-6. PMID: 10074423.
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      200. López-Juez E, Jarvis RP, Takeuchi A, Page AM, Chory J. New Arabidopsis cue mutants suggest a close connection between plastid- and phytochrome regulation of nuclear gene expression. Plant Physiol. 1998 Nov; 118(3):803-15. PMID: 9808724; PMCID: PMC34790.
      201. Jarvis P, Chen LJ, Li H, Peto CA, Fankhauser C, Chory J. An Arabidopsis mutant defective in the plastid general protein import apparatus. Science. 1998 Oct 02; 282(5386):100-3. PMID: 9756470.
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      202. Neff MM, Chory J. Genetic interactions between phytochrome A, phytochrome B, and cryptochrome 1 during Arabidopsis development. Plant Physiol. 1998 Sep; 118(1):27-35. PMID: 9733523; PMCID: PMC34865.
      203. Neff MM, Neff JD, Chory J, Pepper AE. dCAPS, a simple technique for the genetic analysis of single nucleotide polymorphisms: experimental applications in Arabidopsis thaliana genetics. Plant J. 1998 May; 14(3):387-92. PMID: 9628033.
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      204. Reed JW, Elumalai RP, Chory J. Suppressors of an Arabidopsis thaliana phyB mutation identify genes that control light signaling and hypocotyl elongation. Genetics. 1998 Mar; 148(3):1295-310. PMID: 9539443; PMCID: PMC1460030.
      205. Li J, Chory J. Preparation of DNA from Arabidopsis. Methods Mol Biol. 1998; 82:55-60. PMID: 9664412.
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      206. Elich TD, Chory J. Phytochrome: if it looks and smells like a histidine kinase, is it a histidine kinase? Cell. 1997 Dec 12; 91(6):713-6. PMID: 9413979.
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      207. Hamazato F, Shinomura T, Hanzawa H, Chory J, Furuya M. Fluence and wavelength requirements for Arabidopsis CAB gene induction by different phytochromes. Plant Physiol. 1997 Dec; 115(4):1533-40. PMID: 9414562; PMCID: PMC158619.
      208. Elich TD, Chory J. Biochemical characterization of Arabidopsis wild-type and mutant phytochrome B holoproteins. Plant Cell. 1997 Dec; 9(12):2271-80. PMID: 9437866; PMCID: PMC157073.
      209. Fujioka S, Li J, Choi YH, Seto H, Takatsuto S, Noguchi T, Watanabe T, Kuriyama H, Yokota T, Chory J, Sakurai A. The Arabidopsis deetiolated2 mutant is blocked early in brassinosteroid biosynthesis. Plant Cell. 1997 Nov; 9(11):1951-62. PMID: 9401120; PMCID: PMC157049.
      210. Anderson SL, Somers DE, Millar AJ, Hanson K, Chory J, Kay SA. Attenuation of phytochrome A and B signaling pathways by the Arabidopsis circadian clock. Plant Cell. 1997 Oct; 9(10):1727-43. PMID: 9368413; PMCID: PMC157017.
      211. Li J, Chory J. A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. Cell. 1997 Sep 05; 90(5):929-38. PMID: 9298904.
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      212. Chory J. Light modulation of vegetative development. Plant Cell. 1997 Jul; 9(7):1225-34. PMID: 9254936; PMCID: PMC156993.
      213. Li J, Biswas MG, Chao A, Russell DW, Chory J. Conservation of function between mammalian and plant steroid 5alpha-reductases. Proc Natl Acad Sci U S A. 1997 Apr 15; 94(8):3554-9. PMID: 9108014; PMCID: PMC20477.
      214. Pepper AE, Chory J. Extragenic suppressors of the Arabidopsis det1 mutant identify elements of flowering-time and light-response regulatory pathways. Genetics. 1997 Apr; 145(4):1125-37. PMID: 9093863; PMCID: PMC1207881.
      215. Mulligan RM, Chory J, Ecker JR. Signaling in plants. Proc Natl Acad Sci U S A. 1997 Apr 01; 94(7):2793-5. PMID: 9096297; PMCID: PMC34151.
      216. Surpin M, Chory J. The co-ordination of nuclear and organellar genome expression in eukaryotic cells. Essays Biochem. 1997; 32:113-25. PMID: 9493015.
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      217. Fankhauser C, Chory J. Light control of plant development. Annu Rev Cell Dev Biol. 1997; 13:203-29. PMID: 9442873.
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      218. Mochizuki N, Susek R, Chory J. An intracellular signal transduction pathway between the chloroplast and nucleus is involved in de-etiolation. Plant Physiol. 1996 Dec; 112(4):1465-9. PMID: 8972595; PMCID: PMC158078.
      219. Fujioka S, Choi YH, Takatsuto S, Yokota T, Li J, Chory J, Sakurai A. Identification of castasterone, 6-deoxocastasterone, typhasterol and 6-deoxotyphasterol from the shoots of Arabidopsis thaliana. Plant Cell Physiol. 1996 Dec; 37(8):1201-3. PMID: 9032971.
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      220. Meehan L, Harkins K, Chory J, Rodermel S. Lhcb Transcription Is Coordinated with Cell Size and Chlorophyll Accumulation (Studies on Fluorescence-Activated, Cell-Sorter-Purified Single Cells from Wild-Type and immutans Arabidopsis thaliana). Plant Physiol. 1996 Nov; 112(3):953-963. PMID: 12226428.
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      221. Chory J, Chatterjee M, Cook RK, Elich T, Fankhauser C, Li J, Nagpal P, Neff M, Pepper A, Poole D, Reed J, Vitart V. From seed germination to flowering, light controls plant development via the pigment phytochrome. Proc Natl Acad Sci U S A. 1996 Oct 29; 93(22):12066-71. PMID: 8901532; PMCID: PMC37942.
      222. Reed JW, Foster KR, Morgan PW, Chory J. Phytochrome B affects responsiveness to gibberellins in Arabidopsis. Plant Physiol. 1996 Sep; 112(1):337-42. PMID: 8819329; PMCID: PMC157954.
      223. Li J, Nagpal P, Vitart V, McMorris TC, Chory J. A role for brassinosteroids in light-dependent development of Arabidopsis. Science. 1996 Apr 19; 272(5260):398-401. PMID: 8602526.
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      224. Chory J, Cook RK, Dixon R, Elich T, Li HM, Lopez E, Mochizuki N, Nagpal P, Pepper A, Poole D. Signal-transduction pathways controlling light-regulated development in Arabidopsis. Philos Trans R Soc Lond B Biol Sci. 1995 Oct 30; 350(1331):59-65. PMID: 8577851.
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      225. Li H, Culligan K, Dixon RA, Chory J. CUE1: A Mesophyll Cell-Specific Positive Regulator of Light-Controlled Gene Expression in Arabidopsis. Plant Cell. 1995 Oct; 7(10):1599-1610. PMID: 12242356.
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      226. Millar AJ, Straume M, Chory J, Chua NH, Kay SA. The regulation of circadian period by phototransduction pathways in Arabidopsis. Science. 1995 Feb 24; 267(5201):1163-6. PMID: 7855596.
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      227. Chory J, Li HM, Mochizuki N. Molecular methods for isolation of signal transduction pathway mutants. Methods Cell Biol. 1995; 49:441-54. PMID: 8531775.
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      228. Elich TD, Chory J. Initial events in phytochrome signalling: still in the dark. Plant Mol Biol. 1994 Dec; 26(5):1315-27. PMID: 7858193.
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      229. Reed JW, Chory J. Mutational analyses of light-controlled seedling development in Arabidopsis. Semin Cell Biol. 1994 Oct; 5(5):327-34. PMID: 7881072.
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      230. Chory J. Plant phototransduction. Phytochrome signal transduction. Curr Biol. 1994 Sep 01; 4(9):844-6. PMID: 7820558.
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      231. Pepper A, Delaney T, Washburn T, Poole D, Chory J. DET1, a negative regulator of light-mediated development and gene expression in arabidopsis, encodes a novel nuclear-localized protein. Cell. 1994 Jul 15; 78(1):109-16. PMID: 8033202.
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      232. Reed JW, Nagatani A, Elich TD, Fagan M, Chory J. Phytochrome A and Phytochrome B Have Overlapping but Distinct Functions in Arabidopsis Development. Plant Physiol. 1994 Apr; 104(4):1139-1149. PMID: 12232154.
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      233. Quail PH, Briggs WR, Chory J, Hangarter RP, Harberd NP, Kendrick RE, Koornneef M, Parks B, Sharrock RA, Schafer E, Thompson WF, Whitelam GC. Spotlight on Phytochrome Nomenclature. Plant Cell. 1994 Apr; 6(4):468-471. PMID: 12244245.
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      234. Chory J, Reinecke D, Sim S, Washburn T, Brenner M. A Role for Cytokinins in De-Etiolation in Arabidopsis (det Mutants Have an Altered Response to Cytokinins). Plant Physiol. 1994 Feb; 104(2):339-347. PMID: 12232085.
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      235. Shinomura T, Nagatani A, Chory J, Furuya M. The Induction of Seed Germination in Arabidopsis thaliana Is Regulated Principally by Phytochrome B and Secondarily by Phytochrome A. Plant Physiol. 1994 Feb; 104(2):363-371. PMID: 12232088.
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      236. Li HM, Altschmied L, Chory J. Arabidopsis mutants define downstream branches in the phototransduction pathway. Genes Dev. 1994 Feb 01; 8(3):339-49. PMID: 8314087.
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      237. Chory J, Elich T, Li HM, Pepper A, Poole D, Reed J, Susek R, Vitart V, Washburn T, Furuya M. Genes controlling Arabidopsis photomorphogenesis. Biochem Soc Symp. 1994; 60:257-63. PMID: 7639785.
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      238. Susek RE, Ausubel FM, Chory J. Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development. Cell. 1993 Sep 10; 74(5):787-99. PMID: 7690685.
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      239. Li HM, Washburn T, Chory J. Regulation of gene expression by light. Curr Opin Cell Biol. 1993 Jun; 5(3):455-60. PMID: 8352963.
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      240. Chory J. Out of darkness: mutants reveal pathways controlling light-regulated development in plants. Trends Genet. 1993 May; 9(5):167-72. PMID: 8337753.
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      241. Nagatani A, Reed JW, Chory J. Isolation and Initial Characterization of Arabidopsis Mutants That Are Deficient in Phytochrome A. Plant Physiol. 1993 May; 102(1):269-277. PMID: 12231818.
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      242. Reed JW, Nagpal P, Poole DS, Furuya M, Chory J. Mutations in the gene for the red/far-red light receptor phytochrome B alter cell elongation and physiological responses throughout Arabidopsis development. Plant Cell. 1993 Feb; 5(2):147-57. PMID: 8453299; PMCID: PMC160258.
      243. Chory J. Light signals in leaf and chloroplast development: photoreceptors and downstream responses in search of a transduction pathway. New Biol. 1991 Jun; 3(6):538-48. PMID: 1911646.
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      244. Chory J, Nagpal P, Peto CA. Phenotypic and Genetic Analysis of det2, a New Mutant That Affects Light-Regulated Seedling Development in Arabidopsis. Plant Cell. 1991 May; 3(5):445-459. PMID: 12324600.
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      245. Chory J, Aguilar N, Peto CA. The phenotype of Arabidopsis thaliana det1 mutants suggests a role for cytokinins in greening. Symp Soc Exp Biol. 1991; 45:21-9. PMID: 1843409.
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      246. Chory J, Peto CA. Mutations in the DET1 gene affect cell-type-specific expression of light-regulated genes and chloroplast development in Arabidopsis. Proc Natl Acad Sci U S A. 1990 Nov; 87(22):8776-80. PMID: 2247447; PMCID: PMC55042.
      247. Ohl S, Hedrick SA, Chory J, Lamb CJ. Functional properties of a phenylalanine ammonia-lyase promoter from Arabidopsis. Plant Cell. 1990 Sep; 2(9):837-48. PMID: 2152131; PMCID: PMC159934.
      248. Chory J, Peto C, Feinbaum R, Pratt L, Ausubel F. Arabidopsis thaliana mutant that develops as a light-grown plant in the absence of light. Cell. 1989 Sep 08; 58(5):991-9. PMID: 2776216.
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      249. Chory J, Peto CA, Ashbaugh M, Saganich R, Pratt L, Ausubel F. Different Roles for Phytochrome in Etiolated and Green Plants Deduced from Characterization of Arabidopsis thaliana Mutants. Plant Cell. 1989 Sep; 1(9):867-880. PMID: 12359912.
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      250. Chory J, Voytas DF, Olszewski NE, Ausubel FM. Gibberellin-Induced Changes in the Populations of Translatable mRNAs and Accumulated Polypeptides in Dwarfs of Maize and Pea. Plant Physiol. 1987 Jan; 83(1):15-23. PMID: 16665192.
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      251. Hoger JH, Chory J, Kaplan S. In vitro biosynthesis and membrane association of photosynthetic reaction center subunits from Rhodopseudomonas sphaeroides. J Bacteriol. 1986 Mar; 165(3):942-50. PMID: 3512531; PMCID: PMC214520.
      252. Donohue TJ, Chory J, Goldsand TE, Lynn SP, Kaplan S. Structure and physical map of Rhodopseudomonas sphaeroides bacteriophage RS1 DNA. J Virol. 1985 Jul; 55(1):147-57. PMID: 2989552; PMCID: PMC254909.
      253. Muller ED, Chory J, Kaplan S. Cloning and characterization of the gene product of the form II ribulose-1,5-bisphosphate carboxylase gene of Rhodopseudomonas sphaeroides. J Bacteriol. 1985 Jan; 161(1):469-72. PMID: 3881398; PMCID: PMC214901.
      254. Chory J, Muller ED, Kaplan S. DNA-directed in vitro synthesis and assembly of the form II D-ribulose-1,5-bisphosphate carboxylase/oxygenase from Rhodopseudomonas sphaeroides. J Bacteriol. 1985 Jan; 161(1):307-13. PMID: 3918003; PMCID: PMC214872.
      255. Chory J, Donohue TJ, Varga AR, Staehelin LA, Kaplan S. Induction of the photosynthetic membranes of Rhodopseudomonas sphaeroides: biochemical and morphological studies. J Bacteriol. 1984 Aug; 159(2):540-54. PMID: 6611335; PMCID: PMC215678.
      256. Chory J, Kaplan S. Light-dependent regulation of the synthesis of soluble and intracytoplasmic membrane proteins of Rhodopseudomonas sphaeroides. J Bacteriol. 1983 Jan; 153(1):465-74. PMID: 6600232; PMCID: PMC217395.
      257. Chory J, Kaplan S. The in vitro transcription-translation of DNA and RNA templates by extracts of Rhodopseudomonas sphaeroides. Optimization and comparison of template specificity with Escherichia coli extracts and in vivo synthesis. J Biol Chem. 1982 Dec 25; 257(24):15110-21. PMID: 6184370.
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