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Jeramie Watrous

Title(s)Assistant Adjunct Professor, Medicine
SchoolVc-health Sciences-schools
Address9500 Gilman Drive #
La Jolla CA 92093
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    Collapse Research 
    Collapse Research Activities and Funding
    Microbial contributions to the host metabolome
    NIH/NIDDK K01DK116917Apr 23, 2018 - Mar 31, 2023
    Role: Principal Investigator

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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. One-Year Effects of Omega-3 Treatment on Fatty Acids, Oxylipins, and Related Bioactive Lipids and Their Associations with Clinical Lipid and Inflammatory Biomarkers: Findings from a Substudy of the Vitamin D and Omega-3 Trial (VITAL). Metabolites. 2020 Oct 27; 10(11). Demler OV, Liu Y, Luttmann-Gibson H, Watrous JD, Lagerborg KA, Dashti H, Giulianini F, Heath M, Camargo CA, Harris WS, Wohlgemuth JG, Andres AM, Tivari S, Long T, Najhawan M, Dao K, Prentice JG, Larsen JA, Okereke OI, Costenbader KH, Buring JE, Manson JE, Cheng S, Jain M, Mora S. PMID: 33120862.
      View in: PubMed   Mentions:
    2. Mapping metabolic oscillations during cell cycle progression. Cell Cycle. 2020 Oct 04; 1-9. Roci I, Watrous JD, Lagerborg KA, Jain M, Nilsson R. PMID: 33016215.
      View in: PubMed   Mentions:    Fields:    
    3. Eicosanoid Inflammatory Mediators Are Robustly Associated With Blood Pressure in the General Population. J Am Heart Assoc. 2020 Sep 25; e017598. Palmu J, Watrous JD, Mercader K, Havulinna AS, Lagerborg KA, Salosensaari A, Inouye M, Larson MG, Rong J, Vasan RS, Lahti L, Andres A, Cheng S, Jousilahti P, Salomaa V, Jain M, Niiranen TJ. PMID: 32975162.
      View in: PubMed   Mentions:    Fields:    
    4. Yeast homologs of human MCUR1 regulate mitochondrial proline metabolism. Nat Commun. 2020 09 25; 11(1):4866. Zulkifli M, Neff JK, Timbalia SA, Garza NM, Chen Y, Watrous JD, Murgia M, Trivedi PP, Anderson SK, Tomar D, Nilsson R, Madesh M, Jain M, Gohil VM. PMID: 32978391.
      View in: PubMed   Mentions:    Fields:    Translation:HumansAnimalsCells
    5. Fructose stimulated de novo lipogenesis is promoted by inflammation. Nat Metab. 2020 Oct; 2(10):1034-1045. Todoric J, Di Caro G, Reibe S, Henstridge DC, Green CR, Vrbanac A, Ceteci F, Conche C, McNulty R, Shalapour S, Taniguchi K, Meikle PJ, Watrous JD, Moranchel R, Najhawan M, Jain M, Liu X, Kisseleva T, Diaz-Meco MT, Moscat J, Knight R, Greten FR, Lau LF, Metallo CM, Febbraio MA, Karin M. PMID: 32839596.
      View in: PubMed   Mentions:
    6. Effects of Diet versus Gastric Bypass on Metabolic Function in Diabetes. N Engl J Med. 2020 08 20; 383(8):721-732. Yoshino M, Kayser BD, Yoshino J, Stein RI, Reeds D, Eagon JC, Eckhouse SR, Watrous JD, Jain M, Knight R, Schechtman K, Patterson BW, Klein S. PMID: 32813948.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCTClinical Trials
    7. Cellular sensing of extracellular purine nucleosides triggers an innate IFN-ß response. Sci Adv. 2020 Jul; 6(30):eaba3688. Dhanwani R, Takahashi M, Mathews IT, Lenzi C, Romanov A, Watrous JD, Pieters B, Hedrick CC, Benedict CA, Linden J, Nilsson R, Jain M, Sharma S. PMID: 32743071.
      View in: PubMed   Mentions:    Fields:    
    8. Structure and Mechanism of a Cyclic Trinucleotide-Activated Bacterial Endonuclease Mediating Bacteriophage Immunity. Mol Cell. 2020 02 20; 77(4):723-733.e6. Lau RK, Ye Q, Birkholz EA, Berg KR, Patel L, Mathews IT, Watrous JD, Ego K, Whiteley AT, Lowey B, Mekalanos JJ, Kranzusch PJ, Jain M, Pogliano J, Corbett KD. PMID: 31932164.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    9. HORMA Domain Proteins and a Trip13-like ATPase Regulate Bacterial cGAS-like Enzymes to Mediate Bacteriophage Immunity. Mol Cell. 2020 02 20; 77(4):709-722.e7. Ye Q, Lau RK, Mathews IT, Birkholz EA, Watrous JD, Azimi CS, Pogliano J, Jain M, Corbett KD. PMID: 31932165.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    10. Large-Scale Profiling of Cellular Metabolic Activities Using Deep 13C Labeling Medium. Methods Mol Biol. 2020; 2088:73-92. Grankvist N, Watrous JD, Jain M, Nilsson R. PMID: 31893371.
      View in: PubMed   Mentions:    Fields:    
    11. Mass spectrometry searches using MASST. Nat Biotechnol. 2020 01; 38(1):23-26. Wang M, Jarmusch AK, Vargas F, Aksenov AA, Gauglitz JM, Weldon K, Petras D, da Silva R, Quinn R, Melnik AV, van der Hooft JJJ, Caraballo-Rodríguez AM, Nothias LF, Aceves CM, Panitchpakdi M, Brown E, Di Ottavio F, Sikora N, Elijah EO, Labarta-Bajo L, Gentry EC, Shalapour S, Kyle KE, Puckett SP, Watrous JD, Carpenter CS, Bouslimani A, Ernst M, Swafford AD, Zúñiga EI, Balunas MJ, Klassen JL, Loomba R, Knight R, Bandeira N, Dorrestein PC. PMID: 31894142.
      View in: PubMed   Mentions: 9     Fields:    
    12. Biliopancreatic Diversion Induces Greater Metabolic Improvement Than Roux-en-Y Gastric Bypass. Cell Metab. 2019 11 05; 30(5):855-864.e3. Harris LA, Kayser BD, Cefalo C, Marini L, Watrous JD, Ding J, Jain M, McDonald JG, Thompson BM, Fabbrini E, Eagon JC, Patterson BW, Mittendorfer B, Mingrone G, Klein S. PMID: 31588013.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCellsCTClinical Trials
    13. Deep Neural Networks for Classification of LC-MS Spectral Peaks. Anal Chem. 2019 10 01; 91(19):12407-12413. Kantz ED, Tiwari S, Watrous JD, Cheng S, Jain M. PMID: 31483992.
      View in: PubMed   Mentions: 4     Fields:    
    14. Statistical Workflow for Feature Selection in Human Metabolomics Data. Metabolites. 2019 Jul 12; 9(7). Antonelli J, Claggett BL, Henglin M, Kim A, Ovsak G, Kim N, Deng K, Rao K, Tyagi O, Watrous JD, Lagerborg KA, Hushcha PV, Demler OV, Mora S, Niiranen TJ, Pereira AC, Jain M, Cheng S. PMID: 31336989.
      View in: PubMed   Mentions:
    15. A Single Visualization Technique for Displaying Multiple Metabolite-Phenotype Associations. Metabolites. 2019 Jul 02; 9(7). Henglin M, Niiranen T, Watrous JD, Lagerborg KA, Antonelli J, Claggett BL, Demosthenes EJ, von Jeinsen B, Demler O, Vasan RS, Larson MG, Jain M, Cheng S. PMID: 31269707.
      View in: PubMed   Mentions:
    16. Microbiota-Produced N-Formyl Peptide fMLF Promotes Obesity-Induced Glucose Intolerance. Diabetes. 2019 07; 68(7):1415-1426. Wollam J, Riopel M, Xu YJ, Johnson AMF, Ofrecio JM, Ying W, El Ouarrat D, Chan LS, Han AW, Mahmood NA, Ryan CN, Lee YS, Watrous JD, Chordia MD, Pan D, Jain M, Olefsky JM. PMID: 31010956.
      View in: PubMed   Mentions: 2     Fields:    Translation:AnimalsCells
    17. Mapping Metabolic Events in the Cancer Cell Cycle Reveals Arginine Catabolism in the Committed SG2M Phase. Cell Rep. 2019 02 12; 26(7):1691-1700.e5. Roci I, Watrous JD, Lagerborg KA, Lafranchi L, Lindqvist A, Jain M, Nilsson R. PMID: 30759381.
      View in: PubMed   Mentions: 5     Fields:    Translation:Humans
    18. Directed Non-targeted Mass Spectrometry and Chemical Networking for Discovery of Eicosanoids and Related Oxylipins. Cell Chem Biol. 2019 03 21; 26(3):433-442.e4. Watrous JD, Niiranen TJ, Lagerborg KA, Henglin M, Xu YJ, Rong J, Sharma S, Vasan RS, Larson MG, Armando A, Mora S, Quehenberger O, Dennis EA, Cheng S, Jain M. PMID: 30661990.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    19. High-Throughput Measure of Bioactive Lipids Using Non-targeted Mass Spectrometry. Methods Mol Biol. 2019; 1862:17-35. Lagerborg KA, Watrous JD, Cheng S, Jain M. PMID: 30315457.
      View in: PubMed   Mentions: 2     Fields:    Translation:Humans
    20. Profiling the Metabolism of Human Cells by Deep 13C Labeling. Cell Chem Biol. 2018 11 15; 25(11):1419-1427.e4. Grankvist N, Watrous JD, Lagerborg KA, Lyutvinskiy Y, Jain M, Nilsson R. PMID: 30270114.
      View in: PubMed   Mentions: 1     Fields:    Translation:HumansCells
    21. A Web Service Framework for Interactive Analysis of Metabolomics Data. Anal Chem. 2017 06 06; 89(11):5713-5718. Lyutvinskiy Y, Watrous JD, Jain M, Nilsson R. PMID: 28514166.
      View in: PubMed   Mentions:    Fields:    
    22. The glutamate/cystine xCT antiporter antagonizes glutamine metabolism and reduces nutrient flexibility. Nat Commun. 2017 04 21; 8:15074. Shin CS, Mishra P, Watrous JD, Carelli V, D'Aurelio M, Jain M, Chan DC. PMID: 28429737.
      View in: PubMed   Mentions: 40     Fields:    Translation:HumansCells
    23. Estimation of flux ratios without uptake or release data: Application to serine and methionine metabolism. . 2017 09; 43(Pt B):137-146. Nilsson R, Roci I, Watrous J, Jain M. PMID: 28232235.
      View in: PubMed   Mentions:
    24. A Method for Measuring Metabolism in Sorted Subpopulations of Complex Cell Communities Using Stable Isotope Tracing. J Vis Exp. 2017 02 04; (120). Roci I, Gallart-Ayala H, Watrous J, Jain M, Wheelock CE, Nilsson R. PMID: 28190056.
      View in: PubMed   Mentions:    Fields:    Translation:HumansCells
    25. Visualization, Quantification, and Alignment of Spectral Drift in Population Scale Untargeted Metabolomics Data. Anal Chem. 2017 02 07; 89(3):1399-1404. Watrous JD, Henglin M, Claggett B, Lehmann KA, Larson MG, Cheng S, Jain M. PMID: 28208263.
      View in: PubMed   Mentions: 7     Fields:    Translation:Humans
    26. Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking. Nat Biotechnol. 2016 08 09; 34(8):828-837. Wang M, Carver JJ, Phelan VV, Sanchez LM, Garg N, Peng Y, Nguyen DD, Watrous J, Kapono CA, Luzzatto-Knaan T, Porto C, Bouslimani A, Melnik AV, Meehan MJ, Liu WT, Crüsemann M, Boudreau PD, Esquenazi E, Sandoval-Calderón M, Kersten RD, Pace LA, Quinn RA, Duncan KR, Hsu CC, Floros DJ, Gavilan RG, Kleigrewe K, Northen T, Dutton RJ, Parrot D, Carlson EE, Aigle B, Michelsen CF, Jelsbak L, Sohlenkamp C, Pevzner P, Edlund A, McLean J, Piel J, Murphy BT, Gerwick L, Liaw CC, Yang YL, Humpf HU, Maansson M, Keyzers RA, Sims AC, Johnson AR, Sidebottom AM, Sedio BE, Klitgaard A, Larson CB, P CAB, Torres-Mendoza D, Gonzalez DJ, Silva DB, Marques LM, Demarque DP, Pociute E, O'Neill EC, Briand E, Helfrich EJN, Granatosky EA, Glukhov E, Ryffel F, Houson H, Mohimani H, Kharbush JJ, Zeng Y, Vorholt JA, Kurita KL, Charusanti P, McPhail KL, Nielsen KF, Vuong L, Elfeki M, Traxler MF, Engene N, Koyama N, Vining OB, Baric R, Silva RR, Mascuch SJ, Tomasi S, Jenkins S, Macherla V, Hoffman T, Agarwal V, Williams PG, Dai J, Neupane R, Gurr J, Rodríguez AMC, Lamsa A, Zhang C, Dorrestein K, Duggan BM, Almaliti J, Allard PM, Phapale P, Nothias LF, Alexandrov T, Litaudon M, Wolfender JL, Kyle JE, Metz TO, Peryea T, Nguyen DT, VanLeer D, Shinn P, Jadhav A, Müller R, Waters KM, Shi W, Liu X, Zhang L, Knight R, Jensen PR, Palsson BO, Pogliano K, Linington RG, Gutiérrez M, Lopes NP, Gerwick WH, Moore BS, Dorrestein PC, Bandeira N. PMID: 27504778.
      View in: PubMed   Mentions: 318     Fields:    
    27. Discovery of tanshinone derivatives with anti-MRSA activity via targeted bio-transformation. Synth Syst Biotechnol. 2016 Sep; 1(3):187-194. He W, Liu M, Huang P, Abdel-Mageed WM, Han J, Watrous JD, Nguyen DD, Wang W, Song F, Dai H, Zhang J, Quinn RJ, Grkovi T, Luo H, Zhang L, Liu X. PMID: 29062942.
      View in: PubMed   Mentions:
    28. Metabolite Profiling and Stable Isotope Tracing in Sorted Subpopulations of Mammalian Cells. Anal Chem. 2016 Mar 01; 88(5):2707-13. Roci I, Gallart-Ayala H, Schmidt A, Watrous J, Jain M, Wheelock CE, Nilsson R. PMID: 26855138.
      View in: PubMed   Mentions: 6     Fields:    Translation:HumansCells
    29. Comparative genomics and metabolic profiling of the genus Lysobacter. BMC Genomics. 2015 Nov 23; 16:991. de Bruijn I, Cheng X, de Jager V, Expósito RG, Watrous J, Patel N, Postma J, Dorrestein PC, Kobayashi D, Raaijmakers JM. PMID: 26597042.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCells
    30. Molecular and chemical dialogues in bacteria-protozoa interactions. Sci Rep. 2015 Aug 06; 5:12837. Song C, Mazzola M, Cheng X, Oetjen J, Alexandrov T, Dorrestein P, Watrous J, van der Voort M, Raaijmakers JM. PMID: 26246193.
      View in: PubMed   Mentions: 9     Fields:    Translation:AnimalsCells
    31. Arteriovenous Blood Metabolomics: A Readout of Intra-Tissue Metabostasis. Sci Rep. 2015 Aug 05; 5:12757. Ivanisevic J, Elias D, Deguchi H, Averell PM, Kurczy M, Johnson CH, Tautenhahn R, Zhu Z, Watrous J, Jain M, Griffin J, Patti GJ, Siuzdak G. PMID: 26244428.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansCTClinical Trials
    32. Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds. Front Microbiol. 2015; 6:693. Van Der Voort M, Meijer HJ, Schmidt Y, Watrous J, Dekkers E, Mendes R, Dorrestein PC, Gross H, Raaijmakers JM. PMID: 26217324.
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    33. Benchmark datasets for 3D MALDI- and DESI-imaging mass spectrometry. Gigascience. 2015; 4:20. Oetjen J, Veselkov K, Watrous J, McKenzie JS, Becker M, Hauberg-Lotte L, Kobarg JH, Strittmatter N, Mróz AK, Hoffmann F, Trede D, Palmer A, Schiffler S, Steinhorst K, Aichler M, Goldin R, Guntinas-Lichius O, von Eggeling F, Thiele H, Maedler K, Walch A, Maass P, Dorrestein PC, Takats Z, Alexandrov T. PMID: 25941567.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimals
    34. Nonribosomal peptides, key biocontrol components for Pseudomonas fluorescens In5, isolated from a Greenlandic suppressive soil. mBio. 2015 Mar 17; 6(2):e00079. Michelsen CF, Watrous J, Glaring MA, Kersten R, Koyama N, Dorrestein PC, Stougaard P. PMID: 25784695.
      View in: PubMed   Mentions: 18     Fields:    Translation:AnimalsCellsPHPublic Health
    35. Thiopeptide antibiotics stimulate biofilm formation in Bacillus subtilis. Proc Natl Acad Sci U S A. 2015 Mar 10; 112(10):3086-91. Bleich R, Watrous JD, Dorrestein PC, Bowers AA, Shank EA. PMID: 25713360.
      View in: PubMed   Mentions: 29     Fields:    Translation:Cells
    36. Quantitative molecular networking to profile marine cyanobacterial metabolomes. J Antibiot (Tokyo). 2014 Jan; 67(1):105-12. Winnikoff JR, Glukhov E, Watrous J, Dorrestein PC, Gerwick WH. PMID: 24281659.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    37. Metabolic profiling directly from the Petri dish using nanospray desorption electrospray ionization imaging mass spectrometry. Anal Chem. 2013 Nov 05; 85(21):10385-91. Watrous J, Roach P, Heath B, Alexandrov T, Laskin J, Dorrestein PC. PMID: 24047514.
      View in: PubMed   Mentions: 29     Fields:    Translation:Cells
    38. Interspecies interactions stimulate diversification of the Streptomyces coelicolor secreted metabolome. mBio. 2013 Aug 20; 4(4). Traxler MF, Watrous JD, Alexandrov T, Dorrestein PC, Kolter R. PMID: 23963177.
      View in: PubMed   Mentions: 86     Fields:    Translation:CellsPHPublic Health
    39. MS/MS networking guided analysis of molecule and gene cluster families. Proc Natl Acad Sci U S A. 2013 Jul 09; 110(28):E2611-20. Nguyen DD, Wu CH, Moree WJ, Lamsa A, Medema MH, Zhao X, Gavilan RG, Aparicio M, Atencio L, Jackson C, Ballesteros J, Sanchez J, Watrous JD, Phelan VV, van de Wiel C, Kersten RD, Mehnaz S, De Mot R, Shank EA, Charusanti P, Nagarajan H, Duggan BM, Moore BS, Bandeira N, Palsson BØ, Pogliano K, Gutiérrez M, Dorrestein PC. PMID: 23798442.
      View in: PubMed   Mentions: 94     Fields:    Translation:Cells
    40. Microbial metabolic exchange in 3D. ISME J. 2013 Apr; 7(4):770-80. Watrous JD, Phelan VV, Hsu CC, Moree WJ, Duggan BM, Alexandrov T, Dorrestein PC. PMID: 23283018.
      View in: PubMed   Mentions: 27     Fields:    Translation:AnimalsCells
    41. The spectral networks paradigm in high throughput mass spectrometry. Mol Biosyst. 2012 Oct; 8(10):2535-44. Guthals A, Watrous JD, Dorrestein PC, Bandeira N. PMID: 22610447.
      View in: PubMed   Mentions: 29     Fields:    Translation:HumansCells
    42. Primer on agar-based microbial imaging mass spectrometry. J Bacteriol. 2012 Nov; 194(22):6023-8. Yang JY, Phelan VV, Simkovsky R, Watrous JD, Trial RM, Fleming TC, Wenter R, Moore BS, Golden SS, Pogliano K, Dorrestein PC. PMID: 22821974.
      View in: PubMed   Mentions: 42     Fields:    Translation:Cells
    43. Mass spectral molecular networking of living microbial colonies. Proc Natl Acad Sci U S A. 2012 Jun 26; 109(26):E1743-52. Watrous J, Roach P, Alexandrov T, Heath BS, Yang JY, Kersten RD, van der Voort M, Pogliano K, Gross H, Raaijmakers JM, Moore BS, Laskin J, Bandeira N, Dorrestein PC. PMID: 22586093.
      View in: PubMed   Mentions: 224     Fields:    Translation:Cells
    44. Imaging mass spectrometry in microbiology. Nat Rev Microbiol. 2011 08 08; 9(9):683-94. Watrous JD, Dorrestein PC. PMID: 21822293.
      View in: PubMed   Mentions: 93     Fields:    
    45. The evolving field of imaging mass spectrometry and its impact on future biological research. J Mass Spectrom. 2011 Feb; 46(2):209-22. Watrous JD, Alexandrov T, Dorrestein PC. PMID: 21322093.
      View in: PubMed   Mentions: 39     Fields:    Translation:HumansAnimals
    46. Integrating '-omics' and natural product discovery platforms to investigate metabolic exchange in microbiomes. Curr Opin Chem Biol. 2011 Feb; 15(1):79-87. Yang JY, Karr JR, Watrous JD, Dorrestein PC. PMID: 21087892.
      View in: PubMed   Mentions: 7     Fields:    Translation:HumansAnimals
    47. Capturing bacterial metabolic exchange using thin film desorption electrospray ionization-imaging mass spectrometry. Anal Chem. 2010 Mar 01; 82(5):1598-600. Watrous J, Hendricks N, Meehan M, Dorrestein PC. PMID: 20121185.
      View in: PubMed   Mentions: 26     Fields:    Translation:Cells
    48. Expansion of the mycobacterial "PUPylome". Mol Biosyst. 2010 Feb; 6(2):376-85. Watrous J, Burns K, Liu WT, Patel A, Hook V, Bafna V, Barry CE, Bark S, Dorrestein PC. PMID: 20094657.
      View in: PubMed   Mentions: 34     Fields:    Translation:Cells
    49. Imaging mass spectrometry of natural products. Nat Prod Rep. 2009 Dec; 26(12):1521-34. Esquenazi E, Yang YL, Watrous J, Gerwick WH, Dorrestein PC. PMID: 19936384.
      View in: PubMed   Mentions: 33     Fields:    
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