Jason Kreisberg

TitleAssistant Researcher
InstitutionUniversity of California San Diego
Address9500 Gilman Drive #0688
La Jolla CA 92093
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help.
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    1. Yu MK, Ma J, Fisher J, Kreisberg J, Raphael BJ, Ideker T. Visible Machine Learning for Biomedicine. Cell. 2018 Jun 14; 173(7):1562-1565. PMID: 29906441.
      View in: PubMed
    2. Bui N, Huang JK, Bojorquez-Gomez A, Licon K, Sanchez KS, Tang SN, Beckett AN, Wang T, Zhang W, Shen JP, Kreisberg J, Ideker T. Disruption of NSD1 in head and neck cancer promotes favorable chemotherapeutic responses linked to hypomethylation. Mol Cancer Ther. 2018 Apr 10. PMID: 29636367.
      View in: PubMed
    3. Zhang W, Bojorquez-Gomez A, Velez DO, Xu G, Sanchez KS, Shen JP, Chen K, Licon K, Melton C, Olson KM, Yu MK, Huang JK, Carter H, Farley EK, Snyder M, Fraley SI, Kreisberg J, Ideker T. A global transcriptional network connecting noncoding mutations to changes in tumor gene expression. Nat Genet. 2018 Apr; 50(4):613-620. PMID: 29610481.
      View in: PubMed
    4. Huang JK, Carlin DE, Yu MK, Zhang W, Kreisberg J, Tamayo P, Ideker T. Systematic Evaluation of Molecular Networks for Discovery of Disease Genes. Cell Syst. 2018 Apr 25; 6(4):484-495.e5. PMID: 29605183.
      View in: PubMed
    5. Wang T, Tsui B, Kreisberg J, Robertson NA, Gross AM, Yu MK, Carter H, Brown-Borg HM, Adams PD, Ideker T. Epigenetic aging signatures in mice livers are slowed by dwarfism, calorie restriction and rapamycin treatment. Genome Biol. 2017 03 28; 18(1):57. PMID: 28351423.
      View in: PubMed
    6. Shen JP, Zhao D, Sasik R, Luebeck J, Birmingham A, Bojorquez-Gomez A, Licon K, Klepper K, Pekin D, Beckett AN, Sanchez KS, Thomas A, Kuo CC, Du D, Roguev A, Lewis NE, Chang AN, Kreisberg J, Krogan N, Qi L, Ideker T, Mali P. Combinatorial CRISPR-Cas9 screens for de novo mapping of genetic interactions. Nat Methods. 2017 Jun; 14(6):573-576. PMID: 28319113.
      View in: PubMed
    7. Carter H, Marty R, Hofree M, Gross AM, Jensen J, Fisch KM, Wu X, DeBoever C, Van Nostrand EL, Song Y, Wheeler E, Kreisberg J, Lippman SM, Yeo GW, Gutkind JS, Ideker T. Interaction Landscape of Inherited Polymorphisms with Somatic Events in Cancer. Cancer Discov. 2017 04; 7(4):410-423. PMID: 28188128.
      View in: PubMed
    8. Hofree M, Carter H, Kreisberg J, Bandyopadhyay S, Mischel PS, Friend S, Ideker T. Challenges in identifying cancer genes by analysis of exome sequencing data. Nat Commun. 2016 Jul 15; 7:12096. PMID: 27417679.
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    9. Gross AM, Jaeger PA, Kreisberg J, Licon K, Jepsen KL, Khosroheidari M, Morsey BM, Swindells S, Shen H, Ng CT, Flagg K, Chen D, Zhang K, Fox HS, Ideker T. Methylome-wide Analysis of Chronic HIV Infection Reveals Five-Year Increase in Biological Age and Epigenetic Targeting of HLA. Mol Cell. 2016 04 21; 62(2):157-168. PMID: 27105112.
      View in: PubMed
    10. Engin HB, Kreisberg J, Carter H. Structure-Based Analysis Reveals Cancer Missense Mutations Target Protein Interaction Interfaces. PLoS One. 2016; 11(4):e0152929. PMID: 27043210; PMCID: PMC4820104.
    11. Yu MK, Kramer M, Dutkowski J, Srivas R, Licon K, Kreisberg J, Ng CT, Krogan N, Sharan R, Ideker T. Translation of Genotype to Phenotype by a Hierarchy of Cell Subsystems. Cell Syst. 2016 Feb 24; 2(2):77-88. PMID: 26949740.
      View in: PubMed
    12. Carvunis AR, Wang T, Skola D, Yu A, Chen J, Kreisberg J, Ideker T. Evidence for a common evolutionary rate in metazoan transcriptional networks. Elife. 2015 Dec 18; 4. PMID: 26682651.
      View in: PubMed
    13. Gross AM, Kreisberg J, Ideker T. Analysis of Matched Tumor and Normal Profiles Reveals Common Transcriptional and Epigenetic Signals Shared across Cancer Types. PLoS One. 2015; 10(11):e0142618. PMID: 26555223.
      View in: PubMed
    14. Lakshmanan U, Yap A, Fulwood J, Yichun L, Hoon SS, Lim J, Ting A, Sem XH, Kreisberg J, Tan P, Tan G, Flotow H. Establishment of a novel whole animal HTS technology platform for melioidosis drug discovery. Comb Chem High Throughput Screen. 2014; 17(9):790-803. PMID: 25329838.
      View in: PubMed
    15. Ooi WF, Ong C, Nandi T, Kreisberg J, Chua HH, Sun G, Chen Y, Mueller C, Conejero L, Eshaghi M, Ang RM, Liu J, Sobral BW, Korbsrisate S, Gan YH, Titball RW, Bancroft GJ, Valade E, Tan P. The condition-dependent transcriptional landscape of Burkholderia pseudomallei. PLoS Genet. 2013; 9(9):e1003795. PMID: 24068961; PMCID: PMC3772027.
    16. Kreisberg J, Ong NT, Krishna A, Joseph TL, Wang J, Ong C, Ooi HA, Sung JC, Siew CC, Chang GC, Biot F, Cuccui J, Wren BW, Chan J, Sivalingam SP, Zhang LH, Verma C, Tan P. Growth inhibition of pathogenic bacteria by sulfonylurea herbicides. Antimicrob Agents Chemother. 2013 Mar; 57(3):1513-7. PMID: 23263008; PMCID: PMC3591922.
    17. Sem X, Kreisberg J, Kawli T, Tan MW, Rhen M, Tan P. Modulation of Caenorhabditis elegans infection sensitivity by the LIN-7 cell junction protein. Cell Microbiol. 2012 Oct; 14(10):1584-99. PMID: 22672310; PMCID: PMC3470699.
    18. Nandi T, Ong C, Singh AP, Boddey J, Atkins T, Sarkar-Tyson M, Essex-Lopresti AE, Chua HH, Pearson T, Kreisberg J, Nilsson C, Ariyaratne P, Ronning C, Losada L, Ruan Y, Sung WK, Woods D, Titball RW, Beacham I, Peak I, Keim P, Nierman WC, Tan P. A genomic survey of positive selection in Burkholderia pseudomallei provides insights into the evolution of accidental virulence. PLoS Pathog. 2010 Apr 01; 6(4):e1000845. PMID: 20368977; PMCID: PMC2848565.
    19. Cavrois M, Neidleman J, Kreisberg J, Greene WC. In vitro derived dendritic cells trans-infect CD4 T cells primarily with surface-bound HIV-1 virions. PLoS Pathog. 2007 Jan; 3(1):e4. PMID: 17238285; PMCID: PMC1779297.
    20. Kreisberg J, Yonemoto W, Greene WC. Endogenous factors enhance HIV infection of tissue naive CD4 T cells by stimulating high molecular mass APOBEC3G complex formation. J Exp Med. 2006 Apr 17; 203(4):865-70. PMID: 16606671; PMCID: PMC2118295.
    21. Cavrois M, Neidleman J, Kreisberg J, Fenard D, Callebaut C, Greene WC. Human immunodeficiency virus fusion to dendritic cells declines as cells mature. J Virol. 2006 Feb; 80(4):1992-9. PMID: 16439555; PMCID: PMC1367165.
    22. Chiu YL, Soros VB, Kreisberg J, Stopak K, Yonemoto W, Greene WC. Cellular APOBEC3G restricts HIV-1 infection in resting CD4+ T cells. Nature. 2005 May 05; 435(7038):108-14. PMID: 15829920.
      View in: PubMed
    23. Sherman MP, Schubert U, Williams SA, de Noronha CM, Kreisberg J, Henklein P, Greene WC. HIV-1 Vpr displays natural protein-transducing properties: implications for viral pathogenesis. Virology. 2002 Oct 10; 302(1):95-105. PMID: 12429519.
      View in: PubMed
    24. Kreisberg J, Betts SD, Haase-Pettingell C, King J. The interdigitated beta-helix domain of the P22 tailspike protein acts as a molecular clamp in trimer stabilization. Protein Sci. 2002 Apr; 11(4):820-30. PMID: 11910025; PMCID: PMC2373520.