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Irina Rodionova

Title(s)Assistant Project Scientist, Bioengineering
SchoolVc-academic Affairs
Address9500 Gilman Drive #0116
La Jolla CA 92093
Phone8/9-25--7160
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    Publications listed below are automatically derived from MEDLINE/PubMed and other sources, which might result in incorrect or missing publications. Researchers can login to make corrections and additions, or contact us for help. to make corrections and additions.
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    Altmetrics Details PMC Citations indicate the number of times the publication was cited by articles in PubMed Central, and the Altmetric score represents citations in news articles and social media. (Note that publications are often cited in additional ways that are not shown here.) Fields are based on how the National Library of Medicine (NLM) classifies the publication's journal and might not represent the specific topic of the publication. Translation tags are based on the publication type and the MeSH terms NLM assigns to the publication. Some publications (especially newer ones and publications not in PubMed) might not yet be assigned Field or Translation tags.) Click a Field or Translation tag to filter the publications.
    1. A Riboflavin Transporter in Bdellovibrio exovorous JSS. J Mol Microbiol Biotechnol. 2019; 29(1-6):27-34. Rodionova IA, Heidari Tajabadi F, Zhang Z, Rodionov DA, Saier MH. PMID: 31509826.
      View in: PubMed   Mentions:    Fields:    
    2. Novel Antimycobacterial Compounds Suppress NAD Biogenesis by Targeting a Unique Pocket of NaMN Adenylyltransferase. ACS Chem Biol. 2019 05 17; 14(5):949-958. Osterman AL, Rodionova I, Li X, Sergienko E, Ma CT, Catanzaro A, Pettigrove ME, Reed RW, Gupta R, Rohde KH, Korotkov KV, Sorci L. PMID: 30969758.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    3. Novel Metabolic Pathways and Regulons for Hexuronate Utilization in Proteobacteria. J Bacteriol. 2019 01 15; 201(2). Bouvier JT, Sernova NV, Ghasempur S, Rodionova IA, Vetting MW, Al-Obaidi NF, Almo SC, Gerlt JA, Rodionov DA. PMID: 30249705.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    4. The uridylyltransferase GlnD and tRNA modification GTPase MnmE allosterically control Escherichia coli folylpoly-?-glutamate synthase FolC. J Biol Chem. 2018 10 05; 293(40):15725-15732. Rodionova IA, Goodacre N, Do J, Hosseinnia A, Babu M, Uetz P, Saier MH. PMID: 30089654.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    5. The Nitrogen Regulatory PII Protein (GlnB) and N-Acetylglucosamine 6-Phosphate Epimerase (NanE) Allosterically Activate Glucosamine 6-Phosphate Deaminase (NagB) in Escherichia coli. J Bacteriol. 2018 03 01; 200(5). Rodionova IA, Goodacre N, Babu M, Emili A, Uetz P, Saier MH. PMID: 29229699.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    6. The phosphocarrier protein HPr of the bacterial phosphotransferase system globally regulates energy metabolism by directly interacting with multiple enzymes in Escherichia coli. J Biol Chem. 2017 08 25; 292(34):14250-14257. Rodionova IA, Zhang Z, Mehla J, Goodacre N, Babu M, Emili A, Uetz P, Saier MH. PMID: 28634232.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    7. A novel bifunctional transcriptional regulator of riboflavin metabolism in Archaea. Nucleic Acids Res. 2017 04 20; 45(7):3785-3799. Rodionova IA, Vetting MW, Li X, Almo SC, Osterman AL, Rodionov DA. PMID: 28073944.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    8. Elucidation of roles for vitamin B12 in regulation of folate, ubiquinone, and methionine metabolism. Proc Natl Acad Sci U S A. 2017 02 14; 114(7):E1205-E1214. Romine MF, Rodionov DA, Maezato Y, Anderson LN, Nandhikonda P, Rodionova IA, Carre A, Li X, Xu C, Clauss TR, Kim YM, Metz TO, Wright AT. PMID: 28137868.
      View in: PubMed   Mentions: 13     Fields:    Translation:Cells
    9. A Novel Transcriptional Regulator Related to Thiamine Phosphate Synthase Controls Thiamine Metabolism Genes in Archaea. J Bacteriol. 2017 02 15; 199(4). Rodionov DA, Leyn SA, Li X, Rodionova IA. PMID: 27920295.
      View in: PubMed   Mentions: 1     Fields:    Translation:Cells
    10. Arginylation regulates purine nucleotide biosynthesis by enhancing the activity of phosphoribosyl pyrophosphate synthase. Nat Commun. 2015 Jul 15; 6:7517. Zhang F, Patel DM, Colavita K, Rodionova I, Buckley B, Scott DA, Kumar A, Shabalina SA, Saha S, Chernov M, Osterman AL, Kashina A. PMID: 26175007.
      View in: PubMed   Mentions: 11     Fields:    Translation:HumansAnimalsCells
    11. Novel Transcriptional Regulons for Autotrophic Cycle Genes in Crenarchaeota. J Bacteriol. 2015 Jul; 197(14):2383-91. Leyn SA, Rodionova IA, Li X, Rodionov DA. PMID: 25939834.
      View in: PubMed   Mentions: 4     Fields:    Translation:Cells
    12. Mycobacterial nicotinate mononucleotide adenylyltransferase: structure, mechanism, and implications for drug discovery. J Biol Chem. 2015 Mar 20; 290(12):7693-706. Rodionova IA, Zuccola HJ, Sorci L, Aleshin AE, Kazanov MD, Ma CT, Sergienko E, Rubin EJ, Locher CP, Osterman AL. PMID: 25631047.
      View in: PubMed   Mentions:    Fields:    Translation:Cells
    13. Genomic distribution of B-vitamin auxotrophy and uptake transporters in environmental bacteria from the Chloroflexi phylum. Environ Microbiol Rep. 2015 Apr; 7(2):204-10. Rodionova IA, Li X, Plymale AE, Motamedchaboki K, Konopka AE, Romine MF, Fredrickson JK, Osterman AL, Rodionov DA. PMID: 25345570.
      View in: PubMed   Mentions: 14     Fields:    Translation:CellsPHPublic Health
    14. Metabolic and bactericidal effects of targeted suppression of NadD and NadE enzymes in mycobacteria. mBio. 2014 Feb 18; 5(1). Rodionova IA, Schuster BM, Guinn KM, Sorci L, Scott DA, Li X, Kheterpal I, Shoen C, Cynamon M, Locher C, Rubin EJ, Osterman AL. PMID: 24549842.
      View in: PubMed   Mentions: 14     Fields:    Translation:Cells
    15. Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria. Front Microbiol. 2013; 4:407. Rodionova IA, Li X, Thiel V, Stolyar S, Stanton K, Fredrickson JK, Bryant DA, Osterman AL, Best AA, Rodionov DA. PMID: 24391637.
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    16. The COMBREX project: design, methodology, and initial results. PLoS Biol. 2013; 11(8):e1001638. Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S. PMID: 24013487.
      View in: PubMed   Mentions: 23     Fields:    Translation:Humans
    17. Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima. Front Microbiol. 2013; 4:244. Rodionov DA, Rodionova IA, Li X, Ravcheev DA, Tarasova Y, Portnoy VA, Zengler K, Osterman AL. PMID: 23986752.
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    18. Novel inositol catabolic pathway in Thermotoga maritima. Environ Microbiol. 2013 Aug; 15(8):2254-66. Rodionova IA, Leyn SA, Burkart MD, Boucher N, Noll KM, Osterman AL, Rodionov DA. PMID: 23441918.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    19. Quinolinate salvage and insights for targeting NAD biosynthesis in group A streptococci. J Bacteriol. 2013 Feb; 195(4):726-32. Sorci L, Blaby IK, Rodionova IA, De Ingeniis J, Tkachenko S, de Crécy-Lagard V, Osterman AL. PMID: 23204464.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    20. Tagaturonate-fructuronate epimerase UxaE, a novel enzyme in the hexuronate catabolic network in Thermotoga maritima. Environ Microbiol. 2012 Nov; 14(11):2920-34. Rodionova IA, Scott DA, Grishin NV, Osterman AL, Rodionov DA. PMID: 22925190.
      View in: PubMed   Mentions: 11     Fields:    Translation:Cells
    21. Diversity and versatility of the Thermotoga maritima sugar kinome. J Bacteriol. 2012 Oct; 194(20):5552-63. Rodionova IA, Yang C, Li X, Kurnasov OV, Best AA, Osterman AL, Rodionov DA. PMID: 22885293.
      View in: PubMed   Mentions: 9     Fields:    Translation:Cells
    22. The FGGY carbohydrate kinase family: insights into the evolution of functional specificities. PLoS Comput Biol. 2011 Dec; 7(12):e1002318. Zhang Y, Zagnitko O, Rodionova I, Osterman A, Godzik A. PMID: 22215998.
      View in: PubMed   Mentions: 22     Fields:    
    23. Targeting metalloproteins by fragment-based lead discovery. Chem Biol Drug Des. 2011 Aug; 78(2):211-23. Johnson S, Barile E, Farina B, Purves A, Wei J, Chen LH, Shiryaev S, Zhang Z, Rodionova I, Agrawal A, Cohen SM, Osterman A, Strongin A, Pellecchia M. PMID: 21564556.
      View in: PubMed   Mentions: 5     Fields:    Translation:AnimalsCells
    24. Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus. BMC Genomics. 2011 Jun 15; 12 Suppl 1:S3. Rodionov DA, Novichkov PS, Stavrovskaya ED, Rodionova IA, Li X, Kazanov MD, Ravcheev DA, Gerasimova AV, Kazakov AE, Kovaleva GY, Permina EA, Laikova ON, Overbeek R, Romine MF, Fredrickson JK, Arkin AP, Dubchak I, Osterman AL, Gelfand MS. PMID: 21810205.
      View in: PubMed   Mentions: 29     Fields:    Translation:Cells
    25. Genomic encyclopedia of sugar utilization pathways in the Shewanella genus. BMC Genomics. 2010 Sep 13; 11:494. Rodionov DA, Yang C, Li X, Rodionova IA, Wang Y, Obraztsova AY, Zagnitko OP, Overbeek R, Romine MF, Reed S, Fredrickson JK, Nealson KH, Osterman AL. PMID: 20836887.
      View in: PubMed   Mentions: 32     Fields:    Translation:Cells
    26. Complexes of bacterial nicotinate mononucleotide adenylyltransferase with inhibitors: implication for structure-based drug design and improvement. J Med Chem. 2010 Jul 22; 53(14):5229-39. Huang N, Kolhatkar R, Eyobo Y, Sorci L, Rodionova I, Osterman AL, Mackerell AD, Zhang H. PMID: 20578699.
      View in: PubMed   Mentions: 8     Fields:    Translation:Cells
    27. Targeting NAD biosynthesis in bacterial pathogens: Structure-based development of inhibitors of nicotinate mononucleotide adenylyltransferase NadD. Chem Biol. 2009 Aug 28; 16(8):849-61. Sorci L, Pan Y, Eyobo Y, Rodionova I, Huang N, Kurnasov O, Zhong S, MacKerell AD, Zhang H, Osterman AL. PMID: 19716475.
      View in: PubMed   Mentions: 23     Fields:    Translation:Cells
    28. A novel class of modular transporters for vitamins in prokaryotes. J Bacteriol. 2009 Jan; 191(1):42-51. Rodionov DA, Hebbeln P, Eudes A, ter Beek J, Rodionova IA, Erkens GB, Slotboom DJ, Gelfand MS, Osterman AL, Hanson AD, Eitinger T. PMID: 18931129.
      View in: PubMed   Mentions: 103     Fields:    Translation:Cells
    29. Transcriptional regulation of NAD metabolism in bacteria: genomic reconstruction of NiaR (YrxA) regulon. Nucleic Acids Res. 2008 Apr; 36(6):2032-46. Rodionov DA, Li X, Rodionova IA, Yang C, Sorci L, Dervyn E, Martynowski D, Zhang H, Gelfand MS, Osterman AL. PMID: 18276644.
      View in: PubMed   Mentions: 25     Fields:    Translation:Cells
    30. Glycerate 2-kinase of Thermotoga maritima and genomic reconstruction of related metabolic pathways. J Bacteriol. 2008 Mar; 190(5):1773-82. Yang C, Rodionov DA, Rodionova IA, Li X, Osterman AL. PMID: 18156253.
      View in: PubMed   Mentions: 17     Fields:    Translation:Cells
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